JSBool
JSHistogram_Clear(JSContext *cx, unsigned argc, jsval *vp)
{
JSObject *obj = JS_THIS_OBJECT(cx, vp);
if (!obj) {
return JS_FALSE;
}
Histogram *h = static_cast<Histogram*>(JS_GetPrivate(obj));
h->Clear();
return JS_TRUE;
}
void ClearHisto() {
extinction_histo.Clear();
diversity_histo.Clear();
lifetime_histo.Clear();
};
bool SdfPlugin::applyFilter(MeshDocument& md, RichParameterSet& pars, vcg::CallBackPos* cb){
enum ONPRIMITIVE{ON_VERTICES, ON_FACES} onPrimitive;
MeshModel* mm = md.mm();
CMeshO& m = mm->cm;
//--- Retrieve parameters
float widenessRad = math::ToRad(pars.getFloat("coneWidth"));
int raysPerCone = pars.getInt("numberRays");
onPrimitive = (ONPRIMITIVE) pars.getEnum("onPrimitive");
qDebug() << "which primitive?" << onPrimitive;
float lo01pec = pars.getFloat("lowQuantile");
float hi01pec = pars.getFloat("hiQuantile");
assert( onPrimitive==ON_VERTICES && "Face mode not supported yet" );
//--- If on vertices, do some cleaning first
if( onPrimitive == ON_VERTICES ){
int dup = tri::Clean<CMeshO>::RemoveDuplicateVertex(m);
int unref = tri::Clean<CMeshO>::RemoveUnreferencedVertex(m);
if (dup > 0 || unref > 0) Log("Removed %i duplicate and %i unreferenced vertices\n",dup,unref);
}
//--- Updating mesh metadata
tri::UpdateBounding<CMeshO>::Box(m);
tri::UpdateNormals<CMeshO>::PerFaceNormalized(m);
tri::UpdateNormals<CMeshO>::PerVertexAngleWeighted(m);
tri::UpdateNormals<CMeshO>::NormalizeVertex(m);
tri::UpdateFlags<CMeshO>::FaceProjection(m);
//--- Enable & Reset the necessary attributes
switch(onPrimitive){
case ON_VERTICES:
// qDebug() << "initializing vert quality";
mm->updateDataMask(MeshModel::MM_VERTQUALITY);
tri::UpdateQuality<CMeshO>::VertexConstant(m,0);
break;
case ON_FACES:
mm->updateDataMask(MeshModel::MM_FACEQUALITY);
tri::UpdateQuality<CMeshO>::FaceConstant(m,0);
break;
}
//--- Add the mesh to an indexing structure (fast ray intersection)
Log("Initializing spatial accelleration...");
mm->updateDataMask(MeshModel::MM_FACEMARK);
TriMeshGrid static_grid; //TODO: rename spatial index
static_grid.Set(m.face.begin(), m.face.end());
Log("Initializing spatial accelleration... DONE!");
// since we are measuring the interior of the shape
// A ray should never go beyond this value
float maxDist=m.bbox.Diag();
// This is a small number to avoid self-intersection during ray
// casting. It's a very common trick
float epsilon = maxDist / 10000.0;
//--- Ray casting
vector<Ray3f> cone;
vector<float> coneSdf;
Ray3f ray;
float t;
for(unsigned int i=0; i<m.vert.size(); i++){
CVertexO& v = m.vert[i];
//--- Update progressbar
cb( i/m.vert.size(), "Casting rays into volume...");
//--- Generate the set of cones
ray.Set( v.P(), -v.N() );
ray.SetOrigin( ray.P(epsilon) );
generateRayCone( ray, widenessRad, raysPerCone, cone, coneSdf, (i==266) );
//--- Trace rays in cone
float mind = +numeric_limits<float>::max();
float maxd = -numeric_limits<float>::max();
for(unsigned int j=0; j<cone.size(); j++){
bool hasInt = tri::DoRay<CMeshO,TriMeshGrid>(m,static_grid,cone[j],maxDist,t);
coneSdf[j] = (hasInt==true) ? t : numeric_limits<float>::quiet_NaN();
mind = (hasInt && (t<mind)) ? t : mind;
maxd = (hasInt && (t>maxd)) ? t : maxd;
if( i==266 ){
qDebug() << " sampled: " << coneSdf[j]
<< " dir: " << toString(cone[j].Direction())
<< " hasInt: " << hasInt;
}
}
//--- Compute per-cone statistics
Histogram<float> H;
H.Clear();
H.SetRange( mind, maxd, 100);
for(unsigned int j=0; j<cone.size(); j++)
if(!math::IsNAN(coneSdf[j]))
H.Add(coneSdf[j]);
float loperc = H.Percentile(lo01pec);
float hiperc = H.Percentile(hi01pec);
if( i == 266){
qDebug() << "percentiles: " << loperc << " " << hiperc;
}
//--- Compute average of samples, throwing away outliers
if( i == 266)
qDebug() << "averaging samples";
float totVal = 0, totCnt = 0;
for(unsigned int j=0; j<coneSdf.size(); j++)
if( !math::IsNAN(coneSdf[j]) ){
// Histogram statistics valid only for dense sets (more 3 members..)
if( coneSdf[j]<loperc || coneSdf[j]>hiperc && coneSdf.size()>3)
continue;
// Weight giving more importance to aligned samples
float weight = cone[j].Direction().dot( ray.Direction() );
// Even more importance
weight = powf( weight, 10 );
if( i==266 ){
qDebug() << "sampled: " << coneSdf[j] << "weight " << weight
<< " dir:" << toString(cone[j].Direction());
}
totVal += weight*coneSdf[j];
totCnt += weight;
}
//--- Save in mesh
v.Q() = totCnt>0 ? (totVal/totCnt) : 0;
}
//----------------------------------------------------------------------------//
//
// STEROIDS STARTS HERE
//
//----------------------------------------------------------------------------//
//--- Create the medial cloud by offsetting the samples of the medial amount
MeshModel* medCloud = md.addNewMesh("medial cloud.obj", NULL, false);
for(unsigned int i=0; i<m.vert.size(); i++){
Ray3f r;
r.Set(m.vert[i].P(), -m.vert[i].N());
tri::Allocator<CMeshO>::AddVertices(medCloud->cm,1);
medCloud->cm.vert.back().P() = r.P(m.vert[i].Q() / 2 );
}
//--- Data for distance queries
vcg::tri::FaceTmark<CMeshO> mf;
mf.SetMesh( &m );
vcg::face::PointDistanceBaseFunctor<float> PDistFunct;
Log("querying real distances");
// Query the location of closest point on the mesh, then measure the difference
float allowedDiff = .02;
vector<float> realdistances(m.vn, 0);
for(unsigned int i=0; i<m.vert.size(); i++){
Point3f currp = medCloud->cm.vert[i].P();
float minDist = maxDist;
Point3f closest;
GridClosest(static_grid, PDistFunct, mf, currp, maxDist, minDist, closest);
float difference = m.vert[i].Q()/2.0 - minDist;
m.vert[i].Q() = exp( -powf(difference/allowedDiff,2) );
}
// Correct the viewmodel so that after this is done the original mesh
// is shown in wireframe and the medial as a cloud.
// mm->glw.cdm = vcg::GLW::DMWire; // show original mesh in wireframe
medCloud->glw.cdm = vcg::GLW::DMPoints; // show cloud
return true;
}