wxString COARpeak::FormatAlleleName(const IOARpeak &x, bool bAmel, bool bCheckOffLadder)
{
bool bOL = bCheckOffLadder ? x.IsOffLadder() : false;
wxString s(x.GetAlleleName());
if(bAmel)
{
s.Replace(_T("1"),_T("X"));
s.Replace(_T("2"),_T("Y"));
}
if(bOL && !s.IsEmpty())
{
SetupOffLadderAlleleName(&s,bOL);
}
return s;
}
void COARpeak::Copy(IOARpeak *pTo, const IOARpeak &x)
{
pTo->SetID(x.GetID());
pTo->SetAlleleCount(x.GetAlleleCount());
pTo->SetCriticalLevel(x.GetCriticalLevel());
pTo->SetBPS(x.GetBPS());
pTo->SetMeanBPS(x.GetMeanBPS());
pTo->SetRFU(x.GetRFU());
pTo->SetTime(x.GetTime());
pTo->SetPeakArea(x.GetPeakArea());
pTo->SetFit(x.GetFit());
pTo->SetIsArtifact(x.IsArtifact());
pTo->SetIsAllele(x.IsAllele());
// pTo->SetIsDisabled(x.IsDisabled());
pTo->SetOffLadderString(x.GetOffLadderString());
pTo->SetAlleleName(x.GetAlleleName());
pTo->SetLocusName(x.GetLocusName());
pTo->SetArtifactLabel(x.GetArtifactLabel());
pTo->SetUpdateTime(x.GetUpdateTime());
}
bool COARpeak::IsCritical(const IOARpeak &x)
{
int n = x.GetCriticalLevel();
return (n > 0) && (n <= MIN_CRITICAL_ARTIFACT); // in wxIDS.h
}
bool COARpeak::GetCountBool(const IOARpeak &x)
{
int n = x.GetAlleleCount();
bool b = n > 1;
return b;
}
bool COARpeak::Equal(
const IOARpeak &x1, const IOARpeak &x2,
bool bCheckAllele, bool bCheckArtifact)
{
bool bRtn = true;
if(bCheckArtifact)
{
bool bArtifact = x1.IsArtifact();
if(bArtifact != x2.IsArtifact())
{
bRtn = false;
}
else if(bArtifact)
{
int n1 = x1.GetCriticalLevel();
int n2 = x2.GetCriticalLevel();
bRtn = (n1 == n2);
}
}
if(!bRtn) {;}
else if(x1.GetID() != x2.GetID())
{ bRtn = false; }
else if(x1.GetAlleleCount() != x2.GetAlleleCount())
{ bRtn = false; }
else if(!DoubleEqual(x1.GetBPS(),x2.GetBPS()))
{ bRtn = false; }
else if(!DoubleEqual(x1.GetMeanBPS(),x2.GetMeanBPS()))
{ bRtn = false; }
else if(!DoubleEqual(x1.GetRFU(),x2.GetRFU()))
{ bRtn = false; }
else if(!DoubleEqual(x1.GetTime(),x2.GetTime()))
{ bRtn = false; }
else if(!DoubleEqual(x1.GetPeakArea(),x2.GetPeakArea()))
{ bRtn = false; }
else if(!DoubleEqual(x1.GetFit(),x2.GetFit(),FIT_DIGIT_MATCH))
{ bRtn = false; }
// else if( bCheckArtifact && (x1.IsArtifact() != x2.IsArtifact()) )
// { bRtn = false; }
else if( bCheckAllele && (x1.IsAllele() != x2.IsAllele()) )
{ bRtn = false; }
else if(x1.IsDisabled() != x2.IsDisabled())
{ bRtn = false; }
else if(x1.GetOffLadderString() != x2.GetOffLadderString())
{ bRtn = false; }
else if(x1.GetAlleleName() != x2.GetAlleleName())
{ bRtn = false; }
else if(x1.GetLocusName() != x2.GetLocusName())
{ bRtn = false; }
else if(bCheckArtifact && (x1.GetArtifactLabel() != x2.GetArtifactLabel()))
{ bRtn = false; }
return bRtn;
}
void COARpeak::Copy(IOARpeak *pTo, const IOARpeak &x)
{
pTo->SetID(x.GetID());
pTo->SetAlleleCount(x.GetAlleleCount());
pTo->SetCriticalLevel(x.GetCriticalLevel());
pTo->SetBPS(x.GetBPS());
pTo->SetMeanBPS(x.GetMeanBPS());
pTo->SetRFU(x.GetRFU());
pTo->SetPullupHeightCorrection(x.GetPullupHeightCorrection());
pTo->SetTime(x.GetTime());
pTo->SetPeakArea(x.GetPeakArea());
pTo->SetWidth(x.GetWidth());
pTo->SetFit(x.GetFit());
pTo->SetIsArtifact(x.IsArtifact());
pTo->SetIsAllele(x.IsAllele());
// pTo->SetIsDisabled(x.IsDisabled());
pTo->SetIsEditable(x.IsEditable());
pTo->SetOffLadderString(x.GetOffLadderString());
pTo->SetAlleleName(x.GetAlleleName());
pTo->SetLocusName(x.GetLocusName());
pTo->SetArtifactLabel(x.GetArtifactLabel());
pTo->SetArtifactUserDisplay(x.GetArtifactUserDisplay());
pTo->SetUpdateTime(x.GetUpdateTime());
}
