void Instance::Language::Load(wcstring const path)
{
if (!path || !*path)
{
Paths paths;
EnumerateResources( paths );
if (paths.empty())
throw Exception( L"language\\english.nlg file not found!" );
Paths::const_iterator it( paths.begin() );
for (Paths::const_iterator end(paths.end()); it != end; ++it)
{
if (it->File() == L"english.nlg")
break;
}
if (it == paths.end())
it = paths.begin();
if (!resource.Load( it->Ptr() ))
throw Exception( L"Failed to load language plugin file!" );
}
else if (!resource.Load( path ))
{
Load( NULL );
}
}
/** Find every pair of overlapping paths. */
static Overlaps findOverlaps(const Graph& g, const Paths& paths)
{
SeedMap seedMap = makeSeedMap(paths);
Overlaps overlaps;
for (Paths::const_iterator it = paths.begin();
it != paths.end(); ++it) {
unsigned i = it - paths.begin();
findOverlaps(g, paths, seedMap, Vertex(i, false), overlaps);
findOverlaps(g, paths, seedMap, Vertex(i, true), overlaps);
}
return overlaps;
}
static VALUE
rbclipper_execute_internal(VALUE self, ClipType cliptype,
VALUE subjfill, VALUE clipfill, VALUE resulttype)
{
if (NIL_P(subjfill)) {
subjfill = ID2SYM(id_even_odd);
}
if (NIL_P(clipfill)) {
clipfill = ID2SYM(id_even_odd);
}
if (NIL_P(resulttype)) {
resulttype = ID2SYM(id_polygons);
}
double inv_multiplier = 1.0 / NUM2LONG(rb_iv_get(self, "@multiplier"));
VALUE r = rb_ary_new();
if (resulttype == ID2SYM(id_polygons)) {
Paths solution;
XCLIPPER(self)->Execute((ClipType) cliptype,
solution,
sym_to_filltype(subjfill),
sym_to_filltype(clipfill));
for(Paths::iterator i = solution.begin(); i != solution.end(); ++i) {
VALUE sub = rb_ary_new();
for(Path::iterator p = i->begin(); p != i->end(); ++p) {
rb_ary_push(sub, rb_ary_new3(2, DBL2NUM(p->X * inv_multiplier), DBL2NUM(p->Y * inv_multiplier)));
}
rb_ary_push(r, sub);
}
}
return r;
}
static VALUE
rbclipper_offset_polygons(int argc, VALUE* argv, VALUE self)
{
double multiplier = NUM2DBL(rb_iv_get(self, "@multiplier"));
double inv_multiplier = 1.0 / multiplier;
VALUE polygonsValue, deltaValue, joinTypeValue, endTypeValue;
rb_scan_args(argc, argv, "31", &polygonsValue, &deltaValue, &joinTypeValue, &endTypeValue);
Paths polygons;
for(long i = 0; i != RARRAY_LEN(polygonsValue); i++) {
VALUE sub = rb_ary_entry(polygonsValue, i);
Check_Type(sub, T_ARRAY);
ClipperLib::Path tmp;
ary_to_polygon(sub, &tmp, multiplier);
polygons.push_back(tmp);
}
Paths resultPaths;
XCLIPPEROFFSET(self)->AddPaths(polygons, sym_to_jointype(joinTypeValue), sym_to_endtype(endTypeValue));
XCLIPPEROFFSET(self)->Execute(resultPaths, NUM2DBL(deltaValue) * multiplier);
VALUE r = rb_ary_new();
for(Paths::iterator i = resultPaths.begin(); i != resultPaths.end(); ++i) {
VALUE sub = rb_ary_new();
for(Path::iterator p = i->begin(); p != i->end(); ++p) {
rb_ary_push(sub, rb_ary_new3(2, DBL2NUM(p->X * inv_multiplier), DBL2NUM(p->Y * inv_multiplier)));
}
rb_ary_push(r, sub);
}
return r;
}
/** Index the first and last contig of each path to facilitate finding
* overlaps between paths. */
static SeedMap makeSeedMap(const Paths& paths)
{
SeedMap seedMap;
for (Paths::const_iterator it = paths.begin();
it != paths.end(); ++it) {
if (it->empty())
continue;
assert(!it->front().ambiguous());
seedMap.insert(make_pair(it->front(),
Vertex(it - paths.begin(), false)));
assert(!it->back().ambiguous());
seedMap.insert(make_pair(it->back() ^ 1,
Vertex(it - paths.begin(), true)));
}
return seedMap;
}
/** Find the largest overlap for each contig and remove it. */
static void trimOverlaps(Paths& paths, const Overlaps& overlaps)
{
vector<unsigned> removed[2];
removed[0].resize(paths.size());
removed[1].resize(paths.size());
for (Overlaps::const_iterator it = overlaps.begin();
it != overlaps.end(); ++it) {
unsigned& a = removed[!it->source.sense][it->source.id];
unsigned& b = removed[it->target.sense][it->target.id];
a = max(a, it->overlap);
b = max(b, it->overlap);
}
for (Paths::iterator it = paths.begin(); it != paths.end(); ++it)
removeContigs(*it, removed[0][it - paths.begin()],
it->size() - removed[1][it - paths.begin()]);
}
/// Compute total number of edges
static size_t computeNumberOfEdges(const Paths& paths)
{
size_t count=0;
for (Paths::const_iterator i = paths.begin(), e = paths.end();
i != e; ++i) {
count += i->size();
}
return count;
}
void Application::_parseCommandLine()
{
typedef boost::filesystem::path Path;
typedef std::vector<std::string> Paths;
boost::program_options::options_description baseOptions ( "Options" );
baseOptions.add_options()
( "cache-directory", boost::program_options::value<std::string>(), "Specify the cache directory file." );
boost::program_options::options_description hidden ( "Hidden options" );
hidden.add_options()
( "files", boost::program_options::value<Paths>(), "files");
boost::program_options::options_description allOptions;
allOptions.add ( baseOptions ).add ( hidden );
boost::program_options::positional_options_description p;
p.add("files", -1);
// Get the command line arguments.
using Usul::CommandLine::Arguments;
boost::program_options::variables_map vm;
boost::program_options::store (
boost::program_options::command_line_parser ( Arguments::instance().argc(), Arguments::instance().argv() ).
options ( allOptions ).positional(p).allow_unregistered().run(), vm );
// Check for the cache directory.
if ( vm.count ( "cache-directory" ) )
{
const std::string cacheDirectory ( vm["cache-directory"].as<std::string>() );
std::cout << "Setting cache directory to " << cacheDirectory << std::endl;
Minerva::Core::DiskCache::instance().cacheDirectory ( cacheDirectory );
}
Paths filenames;
if ( vm.count ( "files" ) )
{
filenames = vm["files"].as<Paths>();
}
// Have to load the config files now. Remove them from the arguments.
Paths configs;
Path ext ( ".jconf" );
std::remove_copy_if ( filenames.begin(), filenames.end(), std::back_inserter ( configs ),
boost::lambda::bind ( static_cast<Path::string_type (*) ( const Path& )> ( &boost::filesystem::extension ), boost::lambda::_1 ) != ext );
this->_loadConfigFiles ( configs );
// Load the model files.
this->_loadModelFiles ( filenames );
}
/** Add the path overlap edges to the specified graph. */
static void addPathOverlapEdges(Graph& g,
const Paths& paths, const vector<string>& pathIDs,
const Overlaps& overlaps)
{
typedef graph_traits<Graph>::vertex_descriptor V;
const bool allowParallelEdge = opt::mode == opt::ASSEMBLE;
// Add the path vertices.
g_contigNames.unlock();
for (Paths::const_iterator it = paths.begin();
it != paths.end(); ++it) {
const ContigPath& path = *it;
const string& id = pathIDs[it - paths.begin()];
if (!path.empty()) {
V u = merge(g, path.begin(), path.end());
put(vertex_name, g, u, id);
}
}
g_contigNames.lock();
// Remove the single-end contigs that are in paths.
for (Paths::const_iterator it = paths.begin();
it != paths.end(); ++it)
remove_vertex_if(g, it->begin(), it->end(),
not1(std::mem_fun_ref(&ContigNode::ambiguous)));
// Add the path edges.
for (Overlaps::const_iterator it = overlaps.begin();
it != overlaps.end(); ++it) {
V u = it->source.descriptor();
V v = it->target.descriptor();
if (allowParallelEdge || !edge(u, v, g).second)
add_edge(u, v, it->distance, static_cast<DG&>(g));
else if (opt::verbose > 0)
cerr << "ambiguous overlap: " << get(vertex_name, g, u)
<< " -> " << get(vertex_name, g, v) << '\n';
}
}
void visit(const char* name, const EntityClassScanner& table) const
{
Paths paths;
EntityClassQuake3_constructDirectory(baseDirectory, table.getExtension(), paths);
if(!string_equal(baseDirectory, gameDirectory))
{
EntityClassQuake3_constructDirectory(gameDirectory, table.getExtension(), paths);
}
for(Paths::iterator i = paths.begin(); i != paths.end(); ++i)
{
EntityClassesLoadFile(table, (*i).second)((*i).first.c_str());
}
}
/** Assemble overlapping paths. */
static void assembleOverlappingPaths(Graph& g,
Paths& paths, vector<string>& pathIDs)
{
if (paths.empty())
return;
// Find overlapping paths.
Overlaps overlaps = findOverlaps(g, paths);
addPathOverlapEdges(g, paths, pathIDs, overlaps);
// Create a property map of path overlaps.
OverlapMap overlapMap;
for (Overlaps::const_iterator it = overlaps.begin();
it != overlaps.end(); ++it)
overlapMap.insert(OverlapMap::value_type(
OverlapMap::key_type(
it->source.descriptor(),
it->target.descriptor()),
it->overlap));
// Assemble unambiguously overlapping paths.
Paths merges;
assemble_if(g, back_inserter(merges),
IsPathOverlap(g, overlapMap, IsPositive<Graph>(g)));
// Merge overlapping paths.
g_contigNames.unlock();
assert(!pathIDs.empty());
setNextContigName(pathIDs.back());
for (Paths::const_iterator it = merges.begin();
it != merges.end(); ++it) {
string name = createContigName();
if (opt::verbose > 0)
cerr << name << '\t' << *it << '\n';
Vertex u(paths.size(), false);
put(vertex_name, g, u.descriptor(), name);
pathIDs.push_back(name);
paths.push_back(mergePaths(paths, overlapMap, *it));
// Remove the merged paths.
for (ContigPath::const_iterator it2 = it->begin();
it2 != it->end(); ++it2) {
if (isPath(*it2))
paths[it2->id() - Vertex::s_offset].clear();
}
}
g_contigNames.lock();
}
Path Grasp_Calculator::calc_poly_centroid(Paths polygons)
{
std::vector<IntPoint> sums;
for (std::vector<Path>::iterator poly = polygons.begin(); poly != polygons.end(); ++poly)
{
IntPoint sum;
sum.X = 0;
sum.Y = 0;
cInt fuck_u_Cpp = 0;
for (std::vector<IntPoint>::iterator ip = poly->begin(); ip != poly->end(); ++ip, fuck_u_Cpp++)
{
sum.X += ip->X;
sum.Y += ip->Y;
}
sum.X = sum.X / fuck_u_Cpp;
sum.Y = sum.Y / fuck_u_Cpp;
sums.push_back(sum);
}
return sums;
}
void PathManager::init()
{
/// Search for the OGRE plugin folder
ogre_plugin_dir = "";
// Use environment variable, if present
char *plugindir = getenv("OGRE_PLUGIN_DIR");
if (plugindir)
{
ogre_plugin_dir = plugindir;
return;
}
#ifdef _WIN32
// Windows: we assume the ogre plugins are in the directory the program is run from (".")
ogre_plugin_dir = ".";
#else
// Linux: Check a list of common path names
typedef std::vector<boost::filesystem::path> Paths;
Paths dirs;
#if defined(__amd64__) || defined(__amd64) || defined(__x86_64__) || defined(_M_X64)
dirs.push_back("/usr/local/lib64");
dirs.push_back("/usr/lib64");
#else
dirs.push_back("/usr/local/lib32");
dirs.push_back("/usr/lib32");
#endif
dirs.push_back("/usr/local");
dirs.push_back("/usr/lib");
// Loop through the paths and pick the first one that contains a plugin
for (Paths::const_iterator p = dirs.begin(); p != dirs.end(); ++p) {
if (boost::filesystem::exists(*p / "OGRE/RenderSystem_GL.so")) {
ogre_plugin_dir = (*p / "OGRE").string();
break;
} else if (boost::filesystem::exists(*p / "ogre/RenderSystem_GL.so")) {
ogre_plugin_dir = (*p / "ogre").string();
break;
}
}
#endif
}
void PATHMANAGER::Init(std::ostream & info_output, std::ostream & error_output)
{
typedef std::vector<fs::path> Paths;
// Set Ogre plugins dir
{
ogre_plugin_dir = "";
char *plugindir = getenv("OGRE_PLUGIN_DIR");
if (plugindir) {
ogre_plugin_dir = plugindir;
#ifndef _WIN32
} else if (fs::exists(fs::path(OGRE_PLUGIN_DIR) / "RenderSystem_GL.so")) {
ogre_plugin_dir = OGRE_PLUGIN_DIR;
#endif
} else {
#ifdef _WIN32
ogre_plugin_dir = ".";
#else
Paths dirs;
#if defined(__amd64__) || defined(__amd64) || defined(__x86_64__) || defined(_M_X64)
dirs.push_back("/usr/local/lib64");
dirs.push_back("/usr/lib64");
#else
dirs.push_back("/usr/local/lib32");
dirs.push_back("/usr/lib32");
#endif
dirs.push_back("/usr/local");
dirs.push_back("/usr/lib");
// Loop through the paths and pick the first one that contain a plugin
for (Paths::const_iterator p = dirs.begin(); p != dirs.end(); ++p) {
if (fs::exists(*p / "OGRE/RenderSystem_GL.so")) {
ogre_plugin_dir = (*p / "OGRE").string();
break;
} else if (fs::exists(*p / "ogre/RenderSystem_GL.so")) {
ogre_plugin_dir = (*p / "ogre").string();
break;
}
}
#endif
}
}
fs::path shortDir = "stuntrally";
// Figure out the user's home directory
{
home_dir = "";
#ifndef _WIN32 // POSIX
char *homedir = getenv("HOME");
if (homedir == NULL)
{
home_dir = "/home/";
homedir = getenv("USER");
if (homedir == NULL) {
homedir = getenv("USERNAME");
if (homedir == NULL) {
error_output << "Could not find user's home directory!" << std::endl;
home_dir = "/tmp/";
}
}
}
#else // Windows
char *homedir = getenv("USERPROFILE");
if (homedir == NULL) homedir = "data"; // WIN 9x/Me
#endif
home_dir += homedir;
}
// Find user's config dir
#ifndef _WIN32 // POSIX
{
char const* conf = getenv("XDG_CONFIG_HOME");
if (conf) user_config_dir = (fs::path(conf) / "stuntrally").string();
else user_config_dir = (fs::path(home_dir) / ".config" / "stuntrally").string();
}
#else // Windows
{
// Open AppData directory
std::string str;
ITEMIDLIST* pidl;
char AppDir[MAX_PATH];
HRESULT hRes = SHGetSpecialFolderLocation(NULL, CSIDL_APPDATA|CSIDL_FLAG_CREATE , &pidl);
if (hRes == NOERROR)
{
SHGetPathFromIDList(pidl, AppDir);
int i;
for (i = 0; AppDir[i] != '\0'; i++) {
if (AppDir[i] == '\\') str += '/';
else str += AppDir[i];
}
user_config_dir = (fs::path(str) / "stuntrally").string();
}
}
#endif
// Create user's config dir
CreateDir(user_config_dir, error_output);
// Find user's data dir (for additional data)
#ifdef _WIN32
user_data_dir = user_config_dir; // APPDATA/stuntrally
#else
{
fs::path shareDir = SHARED_DATA_DIR;
char const* xdg_data_home = getenv("XDG_DATA_HOME");
user_data_dir = (xdg_data_home ? xdg_data_home / shortDir : fs::path(home_dir) / ".local" / shareDir).string();
}
#endif
// Create user's data dir and its children
CreateDir(user_data_dir, error_output);
CreateDir(GetTrackRecordsPath(), error_output);
CreateDir(GetScreenShotDir(), error_output);
CreateDir(GetTrackPathUser(), error_output); // user tracks
CreateDir(GetTrackPathUser()+"/_previews", error_output);
CreateDir(GetReplayPath(), error_output);
CreateDir(GetGhostsPath(), error_output);
// Find game data dir and defaults config dir
char *datadir = getenv("STUNTRALLY_DATA_ROOT");
if (datadir)
game_data_dir = std::string(datadir);
else
{ fs::path shareDir = SHARED_DATA_DIR;
Paths dirs;
// Adding users data dir
// TODO: Disabled for now until this is handled properly
//dirs.push_back(user_data_dir);
// Adding relative path from installed executable
dirs.push_back(execname().parent_path().parent_path() / shareDir);
// Adding relative path for running from sources
dirs.push_back(execname().parent_path().parent_path() / "data");
dirs.push_back(execname().parent_path().parent_path());
dirs.push_back(execname().parent_path() / "data");
dirs.push_back(execname().parent_path());
#ifndef _WIN32
// Adding XDG_DATA_DIRS
{
char const* xdg_data_dirs = getenv("XDG_DATA_DIRS");
std::istringstream iss(xdg_data_dirs ? xdg_data_dirs : "/usr/local/share/:/usr/share/");
for (std::string p; std::getline(iss, p, ':'); dirs.push_back(p / shortDir)) {}
}
#endif
// TODO: Adding path from config file
// Loop through the paths and pick the first one that contain some data
for (Paths::const_iterator p = dirs.begin(); p != dirs.end(); ++p) {
// Data dir
if (fs::exists(*p / "hud")) game_data_dir = p->string();
// Config dir
if (fs::exists(*p / "config"))
game_config_dir = (*p / "config").string();
// Check if both are found
if (!game_data_dir.empty() && !game_config_dir.empty()) break;
}
}
// Find cache dir
#ifdef _WIN32
cache_dir = user_config_dir + "/cache"; // APPDATA/stuntrally/cache
#else
char const* xdg_cache_home = getenv("XDG_CACHE_HOME");
cache_dir = (xdg_cache_home ? xdg_cache_home / shortDir : fs::path(home_dir) / ".cache" / shortDir).string();
#endif
// Create cache dir
CreateDir(cache_dir, error_output);
CreateDir(GetShaderCacheDir(), error_output);
// Print diagnostic info
std::stringstream out;
out << "--- Directories: ---" << ogre_plugin_dir << std::endl;
out << "Ogre plugin: " << ogre_plugin_dir << std::endl;
out << "Home: " << home_dir << std::endl;
out << "Default cfg: " << GetGameConfigDir() << std::endl;
out << "User cfg: " << GetUserConfigDir() << std::endl;
out << "Data: " << GetDataPath() << std::endl;
out << "User data: " << GetUserDataDir() << std::endl;
out << "Cache: " << GetCacheDir() << std::endl;
out << "Shader cache: " << GetShaderCacheDir() << std::endl;
out << "Log: " << GetLogDir() << std::endl;
info_output << out.str();
}
void PSP(Paths&ps) {
PSI psi;
for(psi=ps.begin(); psi!=ps.end(); ++psi) {
PP(*psi);
}
}
void PATHMANAGER::Init(bool log_paths)
{
typedef vector<fs::path> Paths;
// Set Ogre plugins dir
{
ogre_plugin = "";
char *plugindir = getenv("OGRE_PLUGIN_DIR");
if (plugindir) {
ogre_plugin = plugindir;
} else {
#ifdef _WIN32
ogre_plugin = ".";
#else
ogre_plugin = OGRE_PLUGIN_DIR_REL;
#endif
}
}
fs::path stuntrally = "stuntrally";
// Figure out the user's home directory
{
home_dir = "";
#ifndef _WIN32 // POSIX
char *homedir = getenv("HOME");
if (homedir == NULL)
{
home_dir = "/home/";
homedir = getenv("USER");
if (homedir == NULL) {
homedir = getenv("USERNAME");
if (homedir == NULL) {
cerr << "Could not find user's home directory!" << endl;
home_dir = "/tmp/";
}
}
}
#else // Windows
char *homedir = getenv("USERPROFILE");
if (homedir == NULL) homedir = "data"; // WIN 9x/Me
#endif
home_dir += homedir;
}
// Find user's config dir
#ifndef _WIN32 // POSIX
{
char const* conf = getenv("XDG_CONFIG_HOME");
if (conf) user_config = (fs::path(conf) / stuntrally).string();
else user_config = (fs::path(home_dir) / ".config" / stuntrally).string();
}
#else // Windows
{
// Open AppData directory
string str;
ITEMIDLIST* pidl;
char AppDir[MAX_PATH];
HRESULT hRes = SHGetSpecialFolderLocation(NULL, CSIDL_APPDATA|CSIDL_FLAG_CREATE, &pidl);
if (hRes == NOERROR)
{
SHGetPathFromIDList(pidl, AppDir);
int i;
for (i = 0; AppDir[i] != '\0'; ++i) {
if (AppDir[i] == '\\') str += '/';
else str += AppDir[i];
}
user_config = (fs::path(str) / stuntrally).string();
}
}
#endif
// Create user's config dir
CreateDir(user_config);
// Find user's data dir (for additional data)
#ifdef _WIN32
user_data = user_config; // APPDATA/stuntrally
#else
{
char const* xdg_data_home = getenv("XDG_DATA_HOME");
user_data = (xdg_data_home ? xdg_data_home / stuntrally
: fs::path(home_dir) / ".local/share" / stuntrally).string();
}
#endif
// Create user's data dir and its children
///--------------------------------------------------
CreateDir(user_data);
CreateDir(Records());
CreateDir(Ghosts());
CreateDir(Replays());
CreateDir(Screenshots());
CreateDir(TracksUser()); // user tracks
CreateDir(DataUser()); // user data
// Find game data dir and defaults config dir
char *datadir = getenv("STUNTRALLY_DATA_ROOT");
if (datadir)
game_data = string(datadir);
else
{ fs::path shareDir = SHARED_DATA_DIR;
Paths dirs;
// Adding users data dir
// TODO: Disabled for now until this is handled properly
//dirs.push_back(user_data_dir);
// Adding relative path for running from sources
dirs.push_back(execname().parent_path().parent_path() / "data");
dirs.push_back(execname().parent_path().parent_path());
dirs.push_back(execname().parent_path() / "data");
dirs.push_back(execname().parent_path());
// Adding relative path from installed executable
dirs.push_back(execname().parent_path().parent_path() / shareDir);
#ifndef _WIN32
// Adding XDG_DATA_DIRS
{
char const* xdg_data_dirs = getenv("XDG_DATA_DIRS");
istringstream iss(xdg_data_dirs ? xdg_data_dirs : "/usr/local/share/:/usr/share/");
for (string p; getline(iss, p, ':'); dirs.push_back(p / stuntrally)) {}
}
#endif
// TODO: Adding path from config file
// Loop through the paths and pick the first one that contain some data
for (Paths::const_iterator p = dirs.begin(); p != dirs.end(); ++p)
{ // Data dir
if (fs::exists(*p / "hud"))
game_data = p->string();
// Config dir
if (fs::exists(*p / "config"))
game_config = (*p / "config").string();
// Check if both are found
if (!game_data.empty() && !game_config.empty()) break;
}
}
// Subdirs for each sim_mode
///--------------------------------------------------
list <string> li;
PATHMANAGER::DirList(PATHMANAGER::CarSim(), li);
for (list <string>::iterator i = li.begin(); i != li.end(); ++i)
{
CreateDir(Records()+"/"+*i);
CreateDir(Ghosts()+"/"+*i);
}
// Find cache dir
#ifdef _WIN32
cache_dir = user_config + "/cache"; // APPDATA/stuntrally/cache
#else
char const* xdg_cache_home = getenv("XDG_CACHE_HOME");
cache_dir = (xdg_cache_home ? xdg_cache_home / stuntrally
: fs::path(home_dir) / ".cache" / stuntrally).string();
#endif
// Create cache dir
CreateDir(CacheDir());
CreateDir(CacheDir()+"/tracks");
CreateDir(ShaderDir());
// Print diagnostic info
if (log_paths)
{
info << "Paths info" << endl;
info << "-------------------------" << endl;
info << "Ogre plugin: " << ogre_plugin << endl;
info << "Data: " << Data() << endl;
//info << "Default cfg: " << GetGameConfigDir() << endl;
info << "Home: " << home_dir << endl;
info << "User cfg,log: " << UserConfigDir() << endl;
info << "User data: " << user_data << endl;
info << "Cache: " << CacheDir() << endl;
info << "-------------------------";
}
}
LatexGenerator::LatexGenerator(const Paths &paths,
const Cordinate maxValues,
const vector<char> &pieces,
const vector<Cordinate> &obstacles,
const string &outputFilename)
{
ofstream out(outputFilename.c_str());
out << "\\documentclass[12pt]{article}" << endl;
out << "\\usepackage{chessboard}" << endl;
out << "\\usepackage{chessfss}" << endl;
out << "\\begin{document}" << endl;
out << "\\chessboard[setpieces={";
int numPieces(0);
for (size_t i = 0; i < pieces.size(); i++)
{
if (pieces.at(i) == ' ' || pieces.at(i) == 'X')
continue;
if (numPieces != 0) out << ',';
out << pieces.at(i);
out << _Alphabets.at(i%maxValues.first);
out << (i/maxValues.first + 1);
numPieces++;
}
out << "}";
if (!obstacles.empty())
{
out << ",pgfstyle={text},text=X,markfields={";
for (size_t i = 0; i < obstacles.size(); i++)
{
if (i!=0) out << ',';
out << _Alphabets.at(obstacles.at(i).first-1) << obstacles.at(i).second;
}
out << "}";
}
if (!paths.empty())
{
system("mkdir -p lg_temp");
int offset(0);
cout << "Generating temp files" << endl;
for (Paths::const_iterator itr = paths.begin(); itr != paths.end(); ++itr)
{
stringstream ss;
ss << "./lg_temp/" << offset;
ofstream out(ss.str().c_str());
const string ¤tPath(*itr);
for (size_t j = 0; j < currentPath.size(); j++)
{
if (isdigit(currentPath.at(j)))
out << currentPath.at(j);
else if (currentPath.at(j) == ',')
out << ' ';
else if (currentPath.at(j) == ')')
out << endl;
}
out.close();
offset++;
}
cout << "DONE Generating temp files" << endl;
out << ",pgfstyle={straightmove},";
out << "markmoves={";
cout << "Generating moves" << endl;
bool isFirst(true);
for (size_t i = 0; i < paths.size(); i++)
{
cout << "Generating move " << i << endl;
stringstream ss;
ss << "./lg_temp/" << i;
ifstream in(ss.str().c_str());
int a1(0), a2(0);
int b1(0), b2(0);
bool isNewFile(true);
while (!in.eof())
{
if (isNewFile)
{
in >> a1;
in >> a2;
}
in >> b1;
in >> b2;
if (in.eof()) break;
if(!isFirst)
{
out << ',';
}
out << _Alphabets.at(a1-1) << a2 << "-" << _Alphabets.at(b1-1) << b2;
a1 = b1;
a2 = b2;
isFirst = false;
isNewFile = false;
}
cout << "DONE Generating move " << i << endl;
}
cout << "DONE Generating moves" << endl;
out << "}, arrow=to, linewidth=0.1em" << endl;
}
int main(int argc, char** argv)
{
string commandLine;
{
ostringstream ss;
char** last = argv + argc - 1;
copy(argv, last, ostream_iterator<const char *>(ss, " "));
ss << *last;
commandLine = ss.str();
}
if (!opt::db.empty())
opt::metaVars.resize(3);
bool die = false;
for (int c; (c = getopt_long(argc, argv,
shortopts, longopts, NULL)) != -1;) {
istringstream arg(optarg != NULL ? optarg : "");
switch (c) {
case '?': die = true; break;
case 'g': arg >> opt::graphPath; break;
case 'k': arg >> opt::k; break;
case 'r': arg >> opt::repeatContigs; break;
case 'v': opt::verbose++; break;
case OPT_HELP:
cout << USAGE_MESSAGE;
exit(EXIT_SUCCESS);
case OPT_VERSION:
cout << VERSION_MESSAGE;
exit(EXIT_SUCCESS);
case OPT_DB:
arg >> opt::db; break;
case OPT_LIBRARY:
arg >> opt::metaVars[0]; break;
case OPT_STRAIN:
arg >> opt::metaVars[1]; break;
case OPT_SPECIES:
arg >> opt::metaVars[2]; break;
}
if (optarg != NULL && !arg.eof()) {
cerr << PROGRAM ": invalid option: `-"
<< (char)c << optarg << "'\n";
exit(EXIT_FAILURE);
}
}
if (opt::k <= 0) {
cerr << PROGRAM ": missing -k,--kmer option\n";
die = true;
}
if (argc - optind < 2) {
cerr << PROGRAM ": missing arguments\n";
die = true;
} else if (argc - optind > 2) {
cerr << PROGRAM ": too many arguments\n";
die = true;
}
if (die) {
cerr << "Try `" << PROGRAM
<< " --help' for more information.\n";
exit(EXIT_FAILURE);
}
const char *adjPath = argv[optind++];
if (opt::verbose > 0)
cerr << "Reading `" << adjPath << "'..." << endl;
ifstream fin(adjPath);
assert_good(fin, adjPath);
Graph g;
fin >> g;
Vertex::s_offset = g.num_vertices() / 2;
string pathsFile(argv[optind++]);
vector<string> pathIDs;
Paths paths = readPaths(g, pathsFile, pathIDs);
switch (opt::mode) {
case opt::OVERLAP:
// Find overlapping paths, do not assemble.
addPathOverlapEdges(g, paths, pathIDs,
findOverlaps(g, paths));
paths.clear();
if (opt::graphPath.empty())
opt::graphPath = "-";
break;
case opt::ASSEMBLE:
// Assemble overlapping paths.
assembleOverlappingPaths(g, paths, pathIDs);
break;
case opt::TRIM:
// Trim overlapping paths.
trimOverlaps(g, paths);
// Remove paths consisting of a single contig.
for_each_if(paths.begin(), paths.end(),
mem_fun_ref(&ContigPath::clear),
compose1(
bind2nd(equal_to<ContigPath::size_type>(), 1),
mem_fun_ref(&ContigPath::size)));
// Add the paths to the graph.
addPathOverlapEdges(g, paths, pathIDs, Overlaps());
break;
}
// Output the paths.
for (Paths::const_iterator it = paths.begin();
it != paths.end(); ++it) {
if (it->empty())
continue;
assert(it->size() != 1);
cout << pathIDs[it - paths.begin()] << '\t' << *it << '\n';
}
assert(cout.good());
// Output the graph.
if (!opt::graphPath.empty()) {
ofstream fout;
ostream& out = opt::graphPath == "-" ? cout
: (fout.open(opt::graphPath.c_str()), fout);
assert_good(out, opt::graphPath);
write_graph(out, g, PROGRAM, commandLine);
assert_good(out, opt::graphPath);
}
// Output the repeat contigs.
if (!opt::repeatContigs.empty()) {
sort(s_trimmedContigs.begin(), s_trimmedContigs.end());
s_trimmedContigs.erase(
unique(s_trimmedContigs.begin(),
s_trimmedContigs.end()), s_trimmedContigs.end());
ofstream out(opt::repeatContigs.c_str());
assert_good(out, opt::repeatContigs);
for (vector<ContigID>::const_iterator it
= s_trimmedContigs.begin();
it != s_trimmedContigs.end(); ++it)
out << get(g_contigNames, *it) << '\n';
assert_good(out, opt::repeatContigs);
}
if (!opt::db.empty()) {
init(db,
opt::db,
opt::verbose,
PROGRAM,
opt::getCommand(argc, argv),
opt::metaVars);
addToDb(db, "SS", opt::ss);
addToDb(db, "K", opt::k);
}
return 0;
}
Plot::Plot(const Paths &paths,
const Cordinate maxValues,
const Cordinate start,
const Cordinate end,
const std::vector<Cordinate> &obstacles,
const string &outputFilename)
{
cout << "Plotting start : " << start.first << "," << start.second << " to end : " << end.first << "," << end.second << endl;
system("mkdir -p temp");
int offset(0);
for (Paths::const_iterator itr = paths.begin(); itr != paths.end(); ++itr)
{
stringstream ss;
ss << "./temp/" << offset;
ofstream out(ss.str().c_str());
const string ¤tPath(*itr);
for (size_t j = 0; j < currentPath.size(); j++)
{
if (isdigit(currentPath.at(j)))
out << currentPath.at(j);
else if (currentPath.at(j) == ',')
out << ' ';
else if (currentPath.at(j) == ')')
out << endl;
}
out.close();
offset++;
}
ofstream profile("profile.gnu");
profile << "set term jpeg" << endl;
profile << "set out \'" << outputFilename << "'" << endl;
profile << "set xrange[0.5:" << float(maxValues.first) +0.5 << "]" << endl;
profile << "set yrange[0.5:" << float(maxValues.second) +0.5 << "]" << endl;
profile << "set grid" << endl;
// profile << "set object circle at " << start.first << "," << start.second << " size 0.2 fillcolor rgbcolor \'red\' fill solid" << endl;
// profile << "set object circle at " << end.first << "," << end.second << " size 0.2 fillcolor rgbcolor \'red\' fill solid" << endl;
for (size_t i = 0; i < obstacles.size(); i++)
{
const pair<int,int> &ob(obstacles.at(i));
profile << "set object rect from " << ob.first-0.5 << "," << ob.second - 0.5 << " to "
<< ob.first+0.5 << "," << ob.second + 0.5 << " fc rgbcolor \'gray\'" << endl;
}
profile << "set xtics (";
for (int i = 0; i < maxValues.first; i++)
{
if (i!=0)
profile << ',';
profile << "'" << i+1 << "'" << (float(i)+0.5);
}
profile << ")" << endl;
profile << "set ytics (";
for (int i = 0; i < maxValues.second; i++)
{
if (i!=0)
profile << ',';
profile << "'" << i+1 << "'" << (float(i)+0.5);
}
profile << ")" << endl;
profile << "plot ";
for (size_t i = 0; i < paths.size(); i++)
{
if (i !=0)
profile << ",";
profile << "'" << "temp/" << i << "\' w linespoints lc \'red\' title \'\' ";
}
profile.close();
system("gnuplot < profile.gnu");
string openJpeg = "gnome-open " + outputFilename;
system(openJpeg.c_str());
}
int main(int argc, char* argv[]) {
// Parse any command-line options.
namespace po = boost::program_options;
po::options_description desc("Allowed options");
desc.add_options()
("help", "show help")
("debug-httpd", po::value<bool>(&mp3d_debug_httpd), "show httpd debug output")
("root", po::value<std::string>(&mp3d_music_root), "root of file system mp3 tree")
("port", po::value<int>(&mp3d_port), "httpd port number")
;
po::variables_map args;
po::store(po::parse_command_line(argc, argv, desc), args);
po::notify(args);
if (args.count("help")) {
std::cout << desc << std::endl;
return 1;
}
// Index all the mp3s.
Paths paths;
find_mp3_files(mp3d_music_root, paths);
std::cerr << ".mp3 files found: " << paths.size() << std::endl;
int old_percentage = -1;
size_t id = 0;
for (Paths::const_iterator it = paths.begin(); it != paths.end(); ++it) {
Mp3Info mp3;
mp3.filename = (*it).string();
const ID3_Tag tag(mp3.filename.c_str());
ID3_Tag::ConstIterator* it = tag.CreateIterator();
for (size_t i = 0; i < tag.NumFrames(); ++i) {
const ID3_Frame* frame = it->GetNext();
if (frame != 0) {
std::string* dst;
switch (frame->GetID()) {
case ID3FID_ALBUM: dst = &mp3.album; break;
case ID3FID_LEADARTIST: dst = &mp3.artist; break;
case ID3FID_TITLE: dst = &mp3.title; break;
default: continue;
}
char* text = ID3_GetString(frame, ID3FN_TEXT);
dst->assign(text);
ID3_FreeString(text);
}
}
// FIXME: maybe a hash, to enable bookmarks?
mp3.id = id++;
all_mp3s.push_back(mp3);
// Show progress. Not really useful when we're not debugging.
// FIXME: start the web server straight away, and say "Indexing..." there.
const int new_percentage = (100*all_mp3s.size())/paths.size();
if (new_percentage != old_percentage) {
std::cout << "\rScanned: " << new_percentage << "%" << std::flush;
old_percentage = new_percentage;
}
}
std::cout << "\r.mp3 files scanned: " << all_mp3s.size() << std::endl;
// Set up the static files we need to serve.
read_static_file("/static/add.png",
"/usr/share/icons/gnome/16x16/actions/gtk-add.png");
read_static_file("/static/play.png",
"/usr/share/icons/gnome/16x16/actions/gtk-media-play-ltr.png");
read_static_file("/static/remove.png",
"/usr/share/icons/gnome/16x16/actions/gtk-remove.png");
static_file_map["/static/site.css"] = make_css();
// Start the mp3 player thread.
boost::thread mp3_player_thread(mp3_play_loop);
// Start the HTTP server.
std::cerr << "Starting HTTP server on port " << mp3d_port << "..." << std::endl;
const int mhd_flags = MHD_USE_SELECT_INTERNALLY;
MHD_Daemon* daemon = MHD_start_daemon(mhd_flags, mp3d_port, 0, 0, &handle_request, 0, MHD_OPTION_END);
if (daemon == 0) {
fail("MHD_start_daemon failed!");
}
getchar(); // Wait for the user to hit enter.
MHD_stop_daemon(daemon);
//mp3_player_thread.join();
return 0;
}