void checkSpecies(Model* model, set<string>& components, set<string>& tests, const map<string, vector<double> >& results, int type) { //Must call this after 'checkCompartments' because we look in 'tests' for 'NonUnityCompartment'. if (model->getNumSpecies() > 0) { components.insert("Species"); if (type==0) { tests.insert("Amount||Concentration"); } else if (type==2) { tests.insert("Amount"); } set<string> compartments; for (unsigned int s=0; s<model->getNumSpecies(); s++) { Species* species = model->getSpecies(s); if (species->isSetBoundaryCondition() && species->getBoundaryCondition()) { tests.insert("BoundaryCondition"); } if (species->getConstant()) { tests.insert("ConstantSpecies"); } if (species->isSetConversionFactor()) { tests.insert("ConversionFactors"); } if (species->isSetHasOnlySubstanceUnits() && species->getHasOnlySubstanceUnits()) { tests.insert("HasOnlySubstanceUnits"); } if (!species->isSetInitialAmount() && !species->isSetInitialConcentration()) { tests.insert("InitialValueReassigned"); } else if (species->isSetId() && initialOverriddenIn(species->getId(), model, results, tests)) { tests.insert("InitialValueReassigned"); } if (species->isSetCompartment()) { compartments.insert(species->getCompartment()); } } if (tests.find("MultiCompartment") != tests.end() && compartments.size()==1 && model->getNumSpecies() > 1) { cerr << "Error: multiple compartments discovered, but all species are in a single compartment." << endl; tests.insert("ERRORMultiCompartment"); } } }
void CompIdBase::checkId (const Species& x) { if (x.isSetId()) doCheckId(x.getId(), x); }