void SeqVect::FromFASTAFile(TextFile &File)
{
Clear();
FILE *f = File.GetStdioFile();
for (;;)
{
char *Label;
unsigned uLength;
char *SeqData = GetFastaSeq(f, &uLength, &Label);
if (0 == SeqData)
return;
Seq *ptrSeq = new Seq;
for (unsigned i = 0; i < uLength; ++i)
{
char c = SeqData[i];
ptrSeq->push_back(c);
}
ptrSeq->SetName(Label);
push_back(ptrSeq);
delete[] SeqData;
delete[] Label;
}
}
void MSA::FromFASTAFile(TextFile &File)
{
Clear();
FILE *f = File.GetStdioFile();
unsigned uSeqCount = 0;
unsigned uColCount = uInsane;
for (;;)
{
char *Label;
unsigned uSeqLength;
char *SeqData = GetFastaSeq(f, &uSeqLength, &Label, false);
if (0 == SeqData)
break;
AppendSeq(SeqData, uSeqLength, Label);
}
}