int main(int argc, char **argv) {
int res = ERR_SUCCESS;
#ifdef WITH_PETSC
PetscInitialize(&argc, &argv, (char *) PETSC_NULL, PETSC_NULL);
#endif
set_verbose(false);
if (argc < 3) error("Not enough parameters");
printf("* Loading mesh '%s'\n", argv[1]);
Mesh mesh;
H3DReader mesh_loader;
if (!mesh_loader.load(argv[1], &mesh)) error("Loading mesh file '%s'\n", argv[1]);
int o;
sscanf(argv[2], "%d", &o);
printf(" - Setting uniform order to %d\n", o);
printf("* Setting the space up\n");
H1Space space(&mesh, bc_types, NULL, o);
int ndofs = space.assign_dofs();
printf(" - Number of DOFs: %d\n", ndofs);
printf("* Calculating a solution\n");
#if defined WITH_UMFPACK
UMFPackMatrix mat;
UMFPackVector rhs;
UMFPackLinearSolver solver(&mat, &rhs);
#elif defined WITH_PARDISO
PardisoMatrix mat;
PardisoVector rhs;
PardisoLinearSolver solver(&mat, &rhs);
#elif defined WITH_PETSC
PetscMatrix mat;
PetscVector rhs;
PetscLinearSolver solver(&mat, &rhs);
#elif defined WITH_MUMPS
MumpsMatrix mat;
MumpsVector rhs;
MumpsSolver solver(&mat, &rhs);
#endif
WeakForm wf;
wf.add_matrix_form(FORM_CB(bilinear_form), SYM);
wf.add_vector_form(FORM_CB(linear_form));
DiscreteProblem dp(&wf, &space, true);
// assemble stiffness matrix
Timer assemble_timer("Assembling stiffness matrix");
assemble_timer.start();
dp.assemble(&mat, &rhs);
assemble_timer.stop();
// solve the stiffness matrix
Timer solve_timer("Solving stiffness matrix");
solve_timer.start();
bool solved = solver.solve();
solve_timer.stop();
// output the measured values
printf("%s: %s (%lf secs)\n", assemble_timer.get_name(), assemble_timer.get_human_time(), assemble_timer.get_seconds());
printf("%s: %s (%lf secs)\n", solve_timer.get_name(), solve_timer.get_human_time(), solve_timer.get_seconds());
// mat.dump(stdout, "a");
// rhs.dump(stdout, "b");
if (solved) {
Solution sln(&mesh);
sln.set_coeff_vector(&space, solver.get_solution() );
ExactSolution ex_sln(&mesh, exact_solution);
// norm
// double h1_sln_norm = h1_norm(&sln);
double h1_err_norm = h1_error(&sln, &ex_sln);
// printf(" - H1 solution norm: % le\n", h1_sln_norm);
printf(" - H1 error norm: % le\n", h1_err_norm);
// double l2_sln_norm = l2_norm(&sln);
// double l2_err_norm = l2_error(&sln, &ex_sln);
// printf(" - L2 solution norm: % le\n", l2_sln_norm);
// printf(" - L2 error norm: % le\n", l2_err_norm);
// if (h1_err_norm > EPS || l2_err_norm > EPS) {
// calculated solution is not enough precise
// res = ERR_FAILURE;
// }
#ifdef AOUTPUT_DIR
// output
const char *of_name = OUTPUT_DIR "/solution.pos";
FILE *ofile = fopen(of_name, "w");
if (ofile != NULL) {
DiffFilter eh(&sln, &ex_sln);
// DiffFilter eh_dx(&sln, &ex_sln, FN_DX, FN_DX);
// DiffFilter eh_dy(&sln, &ex_sln, FN_DY, FN_DY);
// DiffFilter eh_dz(&sln, &ex_sln, FN_DZ, FN_DZ);
GmshOutputEngine output(ofile);
output.out(&sln, "Uh");
// output.out(&sln, "Uh dx", FN_DX_0);
// output.out(&sln, "Uh dy", FN_DY_0);
// output.out(&sln, "Uh dz", FN_DZ_0);
output.out(&eh, "Eh");
// output.out(&eh_dx, "Eh dx");
// output.out(&eh_dy, "Eh dy");
// output.out(&eh_dz, "Eh dz");
output.out(&ex_sln, "U");
// output.out(&ex_sln, "U dx", FN_DX_0);
// output.out(&ex_sln, "U dy", FN_DY_0);
// output.out(&ex_sln, "U dz", FN_DZ_0);
fclose(ofile);
}
else {
warning("Can not open '%s' for writing.", of_name);
}
#endif
}
#ifdef WITH_PETSC
mat.free();
rhs.free();
PetscFinalize();
#endif
return res;
}
int main(int argc, char **argv) {
int res = ERR_SUCCESS;
#ifdef WITH_PETSC
PetscInitialize(&argc, &argv, (char *) PETSC_NULL, PETSC_NULL);
#endif
set_verbose(false);
if (argc < 3) error("Not enough parameters");
HcurlShapesetLobattoHex shapeset;
printf("* Loading mesh '%s'\n", argv[1]);
Mesh mesh;
Mesh3DReader mesh_loader;
if (!mesh_loader.load(argv[1], &mesh)) error("Loading mesh file '%s'\n", argv[1]);
printf("* Setting the space up\n");
HcurlSpace space(&mesh, &shapeset);
space.set_bc_types(bc_types);
int order;
sscanf(argv[2], "%d", &order);
int dir_x = order, dir_y = order, dir_z = order;
order3_t o(dir_x, dir_y, dir_z);
printf(" - Setting uniform order to (%d, %d, %d)\n", o.x, o.y ,o.z);
space.set_uniform_order(o);
int ndofs = space.assign_dofs();
printf(" - Number of DOFs: %d\n", ndofs);
printf("* Calculating a solution\n");
#if defined WITH_UMFPACK
UMFPackMatrix mat;
UMFPackVector rhs;
UMFPackLinearSolver solver(&mat, &rhs);
#elif defined WITH_PARDISO
PardisoMatrix mat;
PardisoVector rhs;
PardisoSolver solver(&mat, &rhs);
#elif defined WITH_PETSC
PetscMatrix mat;
PetscVector rhs;
PetscLinearSolver solver(&mat, &rhs);
#elif defined WITH_MUMPS
MumpsMatrix mat;
MumpsVector rhs;
MumpsSolver solver(&mat, &rhs);
#endif
WeakForm wf;
wf.add_matrix_form(bilinear_form<double, scalar>, bilinear_form<ord_t, ord_t>, SYM);
wf.add_matrix_form_surf(bilinear_form_surf<double, scalar>, bilinear_form_surf<ord_t, ord_t>);
wf.add_vector_form(linear_form<double, scalar>, linear_form<ord_t, ord_t>);
wf.add_vector_form_surf(linear_form_surf<double, scalar>, linear_form_surf<ord_t, ord_t>);
LinearProblem lp(&wf, &space);
// assemble stiffness matrix
Timer assemble_timer("Assembling stiffness matrix");
assemble_timer.start();
lp.assemble(&mat, &rhs);
assemble_timer.stop();
// solve the stiffness matrix
Timer solve_timer("Solving stiffness matrix");
solve_timer.start();
bool solved = solver.solve();
solve_timer.stop();
//#ifdef OUTPUT_DIR
mat.dump(stdout, "a");
rhs.dump(stdout, "b");
//#endif
if (solved) {
scalar *s = solver.get_solution();
Solution sln(&mesh);
sln.set_coeff_vector(&space, s);
printf("* Solution:\n");
for (int i = 1; i <= ndofs; i++) {
printf(" x[% 3d] = " SCALAR_FMT "\n", i, SCALAR(s[i]));
}
// output the measured values
printf("%s: %s (%lf secs)\n", assemble_timer.get_name(), assemble_timer.get_human_time(), assemble_timer.get_seconds());
printf("%s: %s (%lf secs)\n", solve_timer.get_name(), solve_timer.get_human_time(), solve_timer.get_seconds());
// norm
ExactSolution ex_sln(&mesh, exact_solution);
double hcurl_sln_norm = hcurl_norm(&sln);
double hcurl_err_norm = hcurl_error(&sln, &ex_sln);
printf(" - Hcurl solution norm: % le\n", hcurl_sln_norm);
printf(" - Hcurl error norm: % le\n", hcurl_err_norm);
double l2_sln_norm = l2_norm_hcurl(&sln);
double l2_err_norm = l2_error_hcurl(&sln, &ex_sln);
printf(" - L2 solution norm: % le\n", l2_sln_norm);
printf(" - L2 error norm: % le\n", l2_err_norm);
if (hcurl_err_norm > EPS || l2_err_norm > EPS) {
// calculated solution is not enough precise
res = ERR_FAILURE;
}
#if 0 //def OUTPUT_DIR
// output
printf("starting output\n");
const char *of_name = OUTPUT_DIR "/solution.vtk";
FILE *ofile = fopen(of_name, "w");
if (ofile != NULL) {
ExactSolution ex_sln(&mesh, exact_solution_0, exact_solution_1, exact_solution_2);
RealPartFilter real_sln(&mesh, &sln, FN_VAL);
ImagPartFilter imag_sln(&mesh, &sln, FN_VAL);
DiffFilter eh(&mesh, &sln, &ex_sln);
DiffFilter eh_dx(&mesh, &sln, &ex_sln, FN_DX, FN_DX);
// DiffFilter eh_dy(&mesh, &sln, &ex_sln, FN_DY, FN_DY);
// DiffFilter eh_dz(&mesh, &sln, &ex_sln, FN_DZ, FN_DZ);
// GmshOutputEngine output(ofile);
VtkOutputEngine output(ofile);
output.out(&real_sln, "real_Uh", FN_VAL);
output.out(&imag_sln, "imag_Uh", FN_VAL);
output.out(&real_sln, "real_Uh_0", FN_VAL_0);
output.out(&real_sln, "real_Uh_1", FN_VAL_1);
output.out(&real_sln, "real_Uh_2", FN_VAL_2);
output.out(&imag_sln, "imag_Uh_0", FN_VAL_0);
output.out(&imag_sln, "imag_Uh_1", FN_VAL_1);
output.out(&imag_sln, "imag_Uh_2", FN_VAL_2);
fclose(ofile);
}
else {
warning("Can not open '%s' for writing.", of_name);
}
#endif
}
#ifdef WITH_PETSC
mat.free();
rhs.free();
PetscFinalize();
#endif
return res;
}
int main(int argc, char **args) {
int res = ERR_SUCCESS;
#ifdef WITH_PETSC
PetscInitialize(&argc, &args, (char *) PETSC_NULL, PETSC_NULL);
#endif
set_verbose(false);
if (argc < 2) error("Not enough parameters");
H1ShapesetLobattoHex shapeset;
printf("* Loading mesh '%s'\n", args[1]);
Mesh mesh;
Mesh3DReader mesh_loader;
if (!mesh_loader.load(args[1], &mesh)) error("Loading mesh file '%s'\n", args[1]);
printf("* Setup space #1\n");
H1Space space1(&mesh, &shapeset);
space1.set_bc_types(bc_types);
order3_t o1(2, 2, 2);
printf(" - Setting uniform order to (%d, %d, %d)\n", o1.x, o1.y, o1.z);
space1.set_uniform_order(o1);
printf("* Setup space #2\n");
H1Space space2(&mesh, &shapeset);
space2.set_bc_types(bc_types);
order3_t o2(4, 4, 4);
printf(" - Setting uniform order to (%d, %d, %d)\n", o2.x, o2.y, o2.z);
space2.set_uniform_order(o2);
int ndofs = 0;
ndofs += space1.assign_dofs();
ndofs += space2.assign_dofs(ndofs);
printf(" - Number of DOFs: %d\n", ndofs);
printf("* Calculating a solution\n");
#if defined WITH_UMFPACK
UMFPackMatrix mat;
UMFPackVector rhs;
UMFPackLinearSolver solver(&mat, &rhs);
#elif defined WITH_PARDISO
PardisoMatrix mat;
PardisoVector rhs;
PardisoLinearSolver solver(&mat, &rhs);
#elif defined WITH_PETSC
PetscMatrix mat;
PetscVector rhs;
PetscLinearSolver solver(&mat, &rhs);
#elif defined WITH_MUMPS
MumpsMatrix mat;
MumpsVector rhs;
MumpsSolver solver(&mat, &rhs);
#endif
WeakForm wf(2);
wf.add_matrix_form(0, 0, bilinear_form_1<double, scalar>, bilinear_form_1<ord_t, ord_t>, SYM);
wf.add_vector_form(0, linear_form_1<double, scalar>, linear_form_1<ord_t, ord_t>);
wf.add_matrix_form(1, 1, bilinear_form_2<double, scalar>, bilinear_form_2<ord_t, ord_t>, SYM);
wf.add_vector_form(1, linear_form_2<double, scalar>, linear_form_2<ord_t, ord_t>);
LinearProblem lp(&wf, Tuple<Space *>(&space1, &space2));
// assemble stiffness matrix
Timer assemble_timer("Assembling stiffness matrix");
assemble_timer.start();
lp.assemble(&mat, &rhs);
assemble_timer.stop();
// solve the stiffness matrix
Timer solve_timer("Solving stiffness matrix");
solve_timer.start();
bool solved = solver.solve();
solve_timer.stop();
// output the measured values
printf("%s: %s (%lf secs)\n", assemble_timer.get_name(), assemble_timer.get_human_time(), assemble_timer.get_seconds());
printf("%s: %s (%lf secs)\n", solve_timer.get_name(), solve_timer.get_human_time(), solve_timer.get_seconds());
if (solved) {
// solution 1
Solution sln1(&mesh);
sln1.set_coeff_vector(&space1, solver.get_solution());
ExactSolution esln1(&mesh, exact_sln_fn_1);
// norm
double h1_sln_norm1 = h1_norm(&sln1);
double h1_err_norm1 = h1_error(&sln1, &esln1);
printf(" - H1 solution norm: % le\n", h1_sln_norm1);
printf(" - H1 error norm: % le\n", h1_err_norm1);
double l2_sln_norm1 = l2_norm(&sln1);
double l2_err_norm1 = l2_error(&sln1, &esln1);
printf(" - L2 solution norm: % le\n", l2_sln_norm1);
printf(" - L2 error norm: % le\n", l2_err_norm1);
if (h1_err_norm1 > EPS || l2_err_norm1 > EPS) {
// calculated solution is not enough precise
res = ERR_FAILURE;
}
// solution 2
Solution sln2(&mesh);
sln2.set_coeff_vector(&space2, solver.get_solution());
ExactSolution esln2(&mesh, exact_sln_fn_2);
// norm
double h1_sln_norm2 = h1_norm(&sln2);
double h1_err_norm2 = h1_error(&sln2, &esln2);
printf(" - H1 solution norm: % le\n", h1_sln_norm2);
printf(" - H1 error norm: % le\n", h1_err_norm2);
double l2_sln_norm2 = l2_norm(&sln2);
double l2_err_norm2 = l2_error(&sln2, &esln2);
printf(" - L2 solution norm: % le\n", l2_sln_norm2);
printf(" - L2 error norm: % le\n", l2_err_norm2);
if (h1_err_norm2 > EPS || l2_err_norm2 > EPS) {
// calculated solution is not enough precise
res = ERR_FAILURE;
}
#ifdef OUTPUT_DIR
// output
const char *of_name = OUTPUT_DIR "/solution.pos";
FILE *ofile = fopen(of_name, "w");
if (ofile != NULL) {
GmshOutputEngine output(ofile);
output.out(&sln1, "Uh_1");
output.out(&esln1, "U1");
output.out(&sln2, "Uh_2");
output.out(&esln2, "U2");
fclose(ofile);
}
else {
warning("Can not open '%s' for writing.", of_name);
}
#endif
}
#ifdef WITH_PETSC
mat.free();
rhs.free();
PetscFinalize();
#endif
TRACE_END;
return res;
}
int main(int argc, char **args) {
int res = ERR_SUCCESS;
#ifdef WITH_PETSC
PetscInitialize(&argc, &args, (char *) PETSC_NULL, PETSC_NULL);
#endif
set_verbose(false);
TRACE_START("trace.txt");
DEBUG_OUTPUT_ON;
SET_VERBOSE_LEVEL(0);
if (argc < 5) error("Not enough parameters");
sscanf(args[2], "%d", &m);
sscanf(args[3], "%d", &n);
sscanf(args[4], "%d", &o);
printf("* Loading mesh '%s'\n", args[1]);
Mesh mesh;
Mesh3DReader mloader;
if (!mloader.load(args[1], &mesh)) error("Loading mesh file '%s'\n", args[1]);
H1ShapesetLobattoHex shapeset;
printf("* Setting the space up\n");
H1Space space(&mesh, &shapeset);
space.set_bc_types(bc_types);
int mx = maxn(4, m, n, o, 4);
order3_t order(mx, mx, mx);
// order3_t order(1, 1, 1);
// order3_t order(m, n, o);
printf(" - Setting uniform order to (%d, %d, %d)\n", mx, mx, mx);
space.set_uniform_order(order);
int ndofs = space.assign_dofs();
printf(" - Number of DOFs: %d\n", ndofs);
printf("* Calculating a solution\n");
#if defined WITH_UMFPACK
UMFPackMatrix mat;
UMFPackVector rhs;
UMFPackLinearSolver solver(&mat, &rhs);
#elif defined WITH_PARDISO
PardisoMatrix mat;
PardisoVector rhs;
PardisoLinearSolver solver(&mat, &rhs);
#elif defined WITH_PETSC
PetscMatrix mat;
PetscVector rhs;
PetscLinearSolver solver(&mat, &rhs);
#elif defined WITH_MUMPS
MumpsMatrix mat;
MumpsVector rhs;
MumpsSolver solver(&mat, &rhs);
#endif
WeakForm wf;
wf.add_matrix_form(bilinear_form<double, scalar>, bilinear_form<ord_t, ord_t>, SYM);
wf.add_vector_form(linear_form<double, scalar>, linear_form<ord_t, ord_t>);
wf.add_vector_form_surf(linear_form_surf<double, scalar>, linear_form_surf<ord_t, ord_t>);
LinearProblem lp(&wf, &space);
// assemble stiffness matrix
printf(" - assembling...\n"); fflush(stdout);
Timer assemble_timer;
assemble_timer.start();
lp.assemble(&mat, &rhs);
assemble_timer.stop();
printf("%s (%lf secs)\n", assemble_timer.get_human_time(), assemble_timer.get_seconds());
// solve the stiffness matrix
printf(" - solving... "); fflush(stdout);
Timer solve_timer;
solve_timer.start();
bool solved = solver.solve();
solve_timer.stop();
printf("%s (%lf secs)\n", solve_timer.get_human_time(), solve_timer.get_seconds());
// mat.dump(stdout, "a");
// rhs.dump(stdout, "b");
if (solved) {
Solution sln(&mesh);
sln.set_coeff_vector(&space, solver.get_solution());
// printf("* Solution:\n");
// double *s = solver.get_solution();
// for (int i = 1; i <= ndofs; i++) {
// printf(" x[% 3d] = % lf\n", i, s[i]);
// }
ExactSolution ex_sln(&mesh, exact_solution);
// norm
double h1_sln_norm = h1_norm(&sln);
double h1_err_norm = h1_error(&sln, &ex_sln);
printf(" - H1 solution norm: % le\n", h1_sln_norm);
printf(" - H1 error norm: % le\n", h1_err_norm);
double l2_sln_norm = l2_norm(&sln);
double l2_err_norm = l2_error(&sln, &ex_sln);
printf(" - L2 solution norm: % le\n", l2_sln_norm);
printf(" - L2 error norm: % le\n", l2_err_norm);
if (h1_err_norm > EPS || l2_err_norm > EPS) {
// calculated solution is not enough precise
res = ERR_FAILURE;
}
#if 0 //def OUTPUT_DIR
printf("* Output\n");
// output
const char *of_name = OUTPUT_DIR "/solution.pos";
FILE *ofile = fopen(of_name, "w");
if (ofile != NULL) {
ExactSolution ex_sln(&mesh, exact_solution);
DiffFilter eh(&sln, &ex_sln);
// DiffFilter eh_dx(&mesh, &sln, &ex_sln, FN_DX, FN_DX);
// DiffFilter eh_dy(&mesh, &sln, &ex_sln, FN_DY, FN_DY);
// DiffFilter eh_dz(&mesh, &sln, &ex_sln, FN_DZ, FN_DZ);
GmshOutputEngine output(ofile);
output.out(&sln, "Uh");
// output.out(&sln, "Uh dx", FN_DX_0);
// output.out(&sln, "Uh dy", FN_DY_0);
// output.out(&sln, "Uh dz", FN_DZ_0);
output.out(&eh, "Eh");
// output.out(&eh_dx, "Eh dx");
// output.out(&eh_dy, "Eh dy");
// output.out(&eh_dz, "Eh dz");
output.out(&ex_sln, "U");
// output.out(&ex_sln, "U dx", FN_DX_0);
// output.out(&ex_sln, "U dy", FN_DY_0);
// output.out(&ex_sln, "U dz", FN_DZ_0);
fclose(ofile);
}
else {
warning("Can not open '%s' for writing.", of_name);
}
#endif
}
else
res = ERR_FAILURE;
#ifdef WITH_PETSC
mat.free();
rhs.free();
PetscFinalize();
#endif
TRACE_END;
return res;
}
bool test_lin_indep(Shapeset *shapeset) {
_F_
printf("I. linear independency\n");
UMFPackMatrix mat;
UMFPackVector rhs;
UMFPackLinearSolver solver(&mat, &rhs);
ShapeFunction fu(shapeset), fv(shapeset);
int n =
Hex::NUM_VERTICES * 1 + // 1 vertex fn
Hex::NUM_EDGES * shapeset->get_num_edge_fns(H3D_MAX_ELEMENT_ORDER) +
Hex::NUM_FACES * shapeset->get_num_face_fns(order2_t(H3D_MAX_ELEMENT_ORDER, H3D_MAX_ELEMENT_ORDER)) +
shapeset->get_num_bubble_fns(Ord3(H3D_MAX_ELEMENT_ORDER, H3D_MAX_ELEMENT_ORDER, H3D_MAX_ELEMENT_ORDER));
printf("number of functions = %d\n", n);
int *fn_idx = new int [n];
int m = 0;
// vertex fns
for (int i = 0; i < Hex::NUM_VERTICES; i++, m++)
fn_idx[m] = shapeset->get_vertex_index(i);
// edge fns
for (int i = 0; i < Hex::NUM_EDGES; i++) {
int order = H3D_MAX_ELEMENT_ORDER;
int *edge_idx = shapeset->get_edge_indices(i, 0, order);
for (int j = 0; j < shapeset->get_num_edge_fns(order); j++, m++)
fn_idx[m] = edge_idx[j];
}
// face fns
for (int i = 0; i < Hex::NUM_FACES; i++) {
order2_t order(H3D_MAX_ELEMENT_ORDER, H3D_MAX_ELEMENT_ORDER);
int *face_idx = shapeset->get_face_indices(i, 0, order);
for (int j = 0; j < shapeset->get_num_face_fns(order); j++, m++)
fn_idx[m] = face_idx[j];
}
// bubble
Ord3 order(H3D_MAX_ELEMENT_ORDER, H3D_MAX_ELEMENT_ORDER, H3D_MAX_ELEMENT_ORDER);
int *bubble_idx = shapeset->get_bubble_indices(order);
for (int j = 0; j < shapeset->get_num_bubble_fns(order); j++, m++)
fn_idx[m] = bubble_idx[j];
// precalc structure
mat.prealloc(n);
for (int i = 0; i < n; i++)
for (int j = 0; j < n; j++)
mat.pre_add_ij(i, j);
mat.alloc();
rhs.alloc(n);
printf("assembling matrix ");
for (int i = 0; i < n; i++) {
fu.set_active_shape(fn_idx[i]);
printf(".");
fflush(stdout); // prevent caching of output (to see that it did not freeze)
for (int j = 0; j < n; j++) {
fv.set_active_shape(fn_idx[j]);
double value = l2_product(&fu, &fv);
mat.add(i, j, value);
}
}
printf("\n");
for (int i = 0; i < n; i++)
rhs.add(i, 0.0);
printf("solving matrix\n");
// solve the system
if (solver.solve()) {
double *sln = solver.get_solution();
bool indep = true;
for (int i = 1; i < n + 1; i++) {
if (sln[i] >= EPS) {
indep = false;
break;
}
}
if (indep)
printf("ok\n");
else
printf("Shape functions are not linearly independent\n");
}
else {
printf("Shape functions are not linearly independent\n");
}
delete [] fn_idx;
return true;
}
/***********************************************************************************
* main program *
***********************************************************************************/
int main(int argc, char **argv) {
#ifdef WITH_PETSC
PetscInitialize(&argc, &argv, (char *) PETSC_NULL, PETSC_NULL);
PetscPushErrorHandler(PetscIgnoreErrorHandler, PETSC_NULL); // Disable PETSc error handler.
#endif
// Load the initial mesh.
Mesh mesh;
Mesh3DReader mloader;
mloader.load("l-beam.mesh3d", &mesh);
// Initial uniform mesh refinements.
printf("Performing %d initial mesh refinements.\n", INIT_REF_NUM);
for (int i=0; i < INIT_REF_NUM; i++) mesh.refine_all_elements(H3D_H3D_H3D_REFT_HEX_XYZ);
Word_t (nelem) = mesh.get_num_elements();
printf("New number of elements is %d.\n", (int) nelem);
// Initialize the shapeset and the cache.
H1ShapesetLobattoHex shapeset;
#if defined WITH_UMFPACK
UMFPackMatrix mat;
UMFPackVector rhs;
UMFPackLinearSolver solver(&mat, &rhs);
#elif defined WITH_PARDISO
PardisoMatrix mat;
PardisoVector rhs;
PardisoLinearSolver solver(&mat, &rhs);
#elif defined WITH_PETSC
PetscMatrix mat;
PetscVector rhs;
PetscLinearSolver solver(&mat, &rhs);
#elif defined WITH_MUMPS
MumpsMatrix mat;
MumpsVector rhs;
MumpsSolver solver(&mat, &rhs);
#endif
// Create H1 spaces x-displacement component.
H1Space xdisp(&mesh, &shapeset);
xdisp.set_bc_types(bc_types_x);
xdisp.set_uniform_order(order3_t(P_INIT, P_INIT, P_INIT));
// Create H1 spaces y-displacement component.
H1Space ydisp(&mesh, &shapeset);
ydisp.set_bc_types(bc_types_y);
ydisp.set_uniform_order(order3_t(P_INIT, P_INIT, P_INIT));
// Create H1 spaces z-displacement component.
H1Space zdisp(&mesh, &shapeset);
zdisp.set_bc_types(bc_types_z);
zdisp.set_uniform_order(order3_t(P_INIT, P_INIT, P_INIT));
// Assign DOF.
int ndofs = 0;
ndofs += xdisp.assign_dofs(ndofs);
ndofs += ydisp.assign_dofs(ndofs);
ndofs += zdisp.assign_dofs(ndofs);
printf(" - Number of DOFs: %d\n", ndofs);
// Initialized the Weak formulation.
WeakForm wf(3);
wf.add_matrix_form(0, 0, bilinear_form_0_0<double, scalar>, bilinear_form_0_0<ord_t, ord_t>, SYM);
wf.add_matrix_form(0, 1, bilinear_form_0_1<double, scalar>, bilinear_form_0_1<ord_t, ord_t>, SYM);
wf.add_matrix_form(0, 2, bilinear_form_0_2<double, scalar>, bilinear_form_0_2<ord_t, ord_t>, SYM);
wf.add_vector_form_surf(0, surf_linear_form_0<double, scalar>, surf_linear_form_0<ord_t, ord_t>);
wf.add_matrix_form(1, 1, bilinear_form_1_1<double, scalar>, bilinear_form_1_1<ord_t, ord_t>, SYM);
wf.add_matrix_form(1, 2, bilinear_form_1_2<double, scalar>, bilinear_form_1_2<ord_t, ord_t>, SYM);
wf.add_vector_form_surf(1, surf_linear_form_1<double, scalar>, surf_linear_form_1<ord_t, ord_t>);
wf.add_matrix_form(2, 2, bilinear_form_2_2<double, scalar>, bilinear_form_2_2<ord_t, ord_t>, SYM);
wf.add_vector_form_surf(2, surf_linear_form_2<double, scalar>, surf_linear_form_2<ord_t, ord_t>, 5);
// Initialize the mesh problem.
LinearProblem lp(&wf);
lp.set_spaces(Tuple<Space *>(&xdisp, &ydisp, &zdisp));
// Assemble stiffness matrix
printf(" - Assembling... "); fflush(stdout);
Timer tmr_assemble;
tmr_assemble.start();
bool assembled = lp.assemble(&mat, &rhs);
tmr_assemble.stop();
if (assembled)
printf("done in %s (%lf secs)\n", tmr_assemble.get_human_time(), tmr_assemble.get_seconds());
else
error("failed!");
// Solve the stiffness matrix.
printf(" - Solving... "); fflush(stdout);
Timer tmr_solve;
tmr_solve.start();
bool solved = solver.solve();
tmr_solve.stop();
if (solved)
printf("done in %s (%lf secs)\n", tmr_solve.get_human_time(), tmr_solve.get_seconds());
else {
printf("failed\n");
}
// Construct a solution.
double *s = solver.get_solution();
Solution xsln(&mesh), ysln(&mesh), zsln(&mesh);
xsln.set_fe_solution(&xdisp, s);
ysln.set_fe_solution(&ydisp, s);
zsln.set_fe_solution(&zdisp, s);
// Output the solutions.
printf(" - Output... "); fflush(stdout);
out_fn(&xsln, &ysln, &zsln, "disp");
printf("done\n");
#ifdef WITH_PETSC
mat.free();
rhs.free();
PetscFinalize();
#endif
return 1;
}
/***********************************************************************************
* main program *
************************************************************************************/
int main(int argc, char **args)
{
#ifdef WITH_PETSC
PetscInitialize(NULL, NULL, PETSC_NULL, PETSC_NULL);
PetscPushErrorHandler(PetscIgnoreErrorHandler, PETSC_NULL); // Disable PETSc error handler.
#endif
// Load the inital mesh.
Mesh mesh;
Mesh3DReader mesh_loader;
mesh_loader.load("hexahedron.mesh3d", &mesh);
// Initial uniform mesh refinements.
printf("Performing %d initial mesh refinements.\n", INIT_REF_NUM);
for (int i=0; i < INIT_REF_NUM; i++) mesh.refine_all_elements(H3D_H3D_H3D_REFT_HEX_XYZ);
Word_t (nelem) = mesh.get_num_elements();
printf("New number of elements is %d.\n", nelem);
//Initialize the shapeset and the cache.
H1ShapesetLobattoHex shapeset;
//Matrix solver.
#if defined WITH_UMFPACK
UMFPackMatrix mat;
UMFPackVector rhs;
UMFPackLinearSolver solver(&mat, &rhs);
#elif defined WITH_PETSC
PetscMatrix mat;
PetscVector rhs;
PetscLinearSolver solver(&mat, &rhs);
#elif defined WITH_MUMPS
MumpsMatrix mat;
MumpsVector rhs;
MumpsSolver solver(&mat, &rhs);
#endif
// Graphs of DOF convergence.
GnuplotGraph graph;
graph.set_captions("", "Degrees of Freedom", "Error [%]");
graph.set_log_y();
graph.add_row("Total error", "k", "-", "O");
// Create H1 space to setup the problem.
H1Space space(&mesh, &shapeset);
space.set_bc_types(bc_types);
space.set_essential_bc_values(essential_bc_values);
space.set_uniform_order(order3_t(P_INIT, P_INIT, P_INIT));
// Initialize the weak formulation.
WeakForm wf;
wf.add_matrix_form(biform<double, double>, biform<ord_t, ord_t>, SYM, ANY);
wf.add_vector_form(liform<double, double>, liform<ord_t, ord_t>, ANY);
// Initialize the coarse mesh problem.
LinProblem lp(&wf);
lp.set_space(&space);
// Adaptivity loop.
int as = 0;
bool done = false;
do {
printf("\n---- Adaptivity step %d:\n", as);
printf("\nSolving on coarse mesh:\n");
// Procedures for coarse mesh problem.
// Assign DOF.
int ndof = space.assign_dofs();
printf(" - Number of DOF: %d\n", ndof);
// Assemble stiffness matrix and rhs.
printf(" - Assembling... ");
fflush(stdout);
if (lp.assemble(&mat, &rhs))
printf("done in %lf secs.\n", lp.get_time());
else
error("failed!");
// Solve the system.
printf(" - Solving... ");
fflush(stdout);
bool solved = solver.solve();
if (solved)
printf("done in %lf secs.\n", solver.get_time());
else
{
printf("Failed.\n");
break;
}
// Construct a solution.
Solution sln(&mesh);
sln.set_fe_solution(&space, solver.get_solution());
// Output the orders and the solution.
if (do_output)
{
out_orders(&space, "order", as);
out_fn(&sln, "sln", as);
}
// Solving fine mesh problem.
printf("Solving on fine mesh:\n");
// Matrix solver.
#if defined WITH_UMFPACK
UMFPackLinearSolver rsolver(&mat, &rhs);
#elif defined WITH_PETSC
PetscLinearSolver rsolver(&mat, &rhs);
#elif defined WITH_MUMPS
MumpsSolver rsolver(&mat, &rhs);
#endif
// Construct the refined mesh for reference(refined) solution.
Mesh rmesh;
rmesh.copy(mesh);
rmesh.refine_all_elements(H3D_H3D_H3D_REFT_HEX_XYZ);
// Setup space for the reference (globally refined) solution.
Space *rspace = space.dup(&rmesh);
rspace->copy_orders(space, 1);
// Initialize the mesh problem for reference solution.
LinProblem rlp(&wf);
rlp.set_space(rspace);
// Assign DOF.
int rndof = rspace->assign_dofs();
printf(" - Number of DOF: %d\n", rndof);
// Assemble stiffness matric and rhs.
printf(" - Assembling... ");
fflush(stdout);
if (rlp.assemble(&mat, &rhs))
printf("done in %lf secs.\n", rlp.get_time());
else
error("failed!");
// Solve the system.
printf(" - Solving... ");
fflush(stdout);
bool rsolved = rsolver.solve();
if (rsolved)
printf("done in %lf secs.\n", rsolver.get_time());
else
{
printf("failed.\n");
break;
}
// Construct the reference(refined) solution.
Solution rsln(&rmesh);
rsln.set_fe_solution(rspace, rsolver.get_solution());
// Compare coarse and fine mesh.
// Calculate the error estimate wrt. refined mesh solution.
double err = h1_error(&sln, &rsln);
printf(" - H1 error: % lf\n", err * 100);
// Save it to the graph.
graph.add_value(0, ndof, err * 100);
if (do_output)
graph.save("conv.gp");
// Calculate error estimates for adaptivity.
printf("Adaptivity\n");
printf(" - calculating error: ");
fflush(stdout);
H1Adapt hp(&space);
double err_est = hp.calc_error(&sln, &rsln) * 100;
printf("% lf %%\n", err_est);
// If error is too large, adapt the mesh.
if (err_est < ERR_STOP)
{
printf("\nDone\n");
break;
}
printf(" - adapting... ");
fflush(stdout);
hp.adapt(THRESHOLD);
printf("done in %lf secs (refined %d element(s)).\n", hp.get_adapt_time(), hp.get_num_refined_elements());
if (rndof >= NDOF_STOP)
{
printf("\nDone.\n");
break;
}
// Clean up.
delete rspace;
// Next adaptivity step.
as++;
mat.free();
rhs.free();
} while (!done);
#ifdef WITH_PETSC
PetscFinalize();
#endif
return 1;
}
