void NormalizingReader::PostBlockReadingHook(NxsBlock & block)
{
//cerr << "PostBlockReadingHook for " << GetBlockIDTitleString(block) << endl;
NxsBlock * toStore;
if (this->storingBlocks)
{
try {
toStore = block.CloneBlock(blockMapper);
}
catch (...)
{
cerr << "CloneBlock of " << GetBlockIDTitleString(block) << " failed with an exception. Only Clonable blocks can be normalized." << endl;
throw;
}
blocksToDelete.push_back(toStore);
blockMapper[block.GetInstanceIdentifier()] = toStore;
}
else
toStore = █
VecBlockPtr impliedBlocks = toStore->GetImpliedBlocks();
for (VecBlockPtr::const_iterator ibIt = impliedBlocks.begin(); ibIt != impliedBlocks.end(); ++ibIt)
{
const BlockUniqueID currBlockID = (*ibIt)->GetInstanceIdentifier();
if ((!this->supportingSharedImpliedBlocks) || writtenBlocks.find(currBlockID) == writtenBlocks.end())
{
if (this->storingBlocks)
blocksToDelete.push_back(*ibIt);
try {
if (outf != 0L)
(*ibIt)->WriteAsNexus(*outf);
}
catch (...)
{
cerr << block.GetInstanceName() << "raised an exception when writing as NEXUS." << endl;
throw;
}
if (this->supportingSharedImpliedBlocks)
writtenBlocks.insert(currBlockID);
}
}
const BlockUniqueID toStoreBlockID = toStore->GetInstanceIdentifier();
try {
if (outf != 0L)
toStore->WriteAsNexus(*outf);
}
catch (...)
{
cerr << GetBlockIDTitleString(block) << " raised an exception when writing as NEXUS." << endl;
throw;
}
writtenBlocks.insert(toStoreBlockID);
}
VecBlockPtr NxsTaxaBlockSurrogate::GetCreatedTaxaBlocks()
{
VecBlockPtr vbp;
if (newtaxa && taxa)
{
vbp.push_back(taxa);
passedRefOfOwnedBlock = true;
}
return vbp;
}