int main(int argc, char *argv[])
{
if (argc < 3) {
std::cout << "Usage: " << argv[0] << " input-matrix output-matrix" << std::endl;
return 1;
}
std::string fname_mat (argv[1]);
bool verbose (true);
// *** reading matrix in crs format from file
std::ifstream in(fname_mat.c_str(), std::ios::in | std::ios::binary);
double *A(NULL);
unsigned *iA(NULL), *jA(NULL), n;
if (in) {
if (verbose) {
std::cout << "reading matrix from " << fname_mat << " ... " << std::flush;
}
BaseLib::RunTime timer;
timer.start();
CS_read(in, n, iA, jA, A);
in.close();
timer.stop();
if (verbose) {
std::cout << "ok, " << timer.elapsed() << " s" << std::endl;
}
} else {
std::cout << "error reading matrix from " << fname_mat << std::endl;
}
unsigned nnz(iA[n]);
if (verbose) {
std::cout << "Parameters read: n=" << n << ", nnz=" << nnz << std::endl;
}
MathLib::CRSMatrix<double, unsigned> *mat (new MathLib::CRSMatrix<double, unsigned>(n, iA, jA, A));
const unsigned n_rows_cols_to_erase(300);
unsigned *rows_cols_to_erase(new unsigned[n_rows_cols_to_erase]);
for (unsigned k(0); k<n_rows_cols_to_erase; k++) {
rows_cols_to_erase[k] = (k+1)*2;
}
BaseLib::RunTime timer;
std::cout << "erasing " << n_rows_cols_to_erase << " rows and columns ... " << std::flush;
timer.start();
mat->eraseEntries(n_rows_cols_to_erase, rows_cols_to_erase);
timer.stop();
std::cout << "ok, " << timer.elapsed() << " s" << std::endl;
delete[] rows_cols_to_erase;
fname_mat = argv[2];
std::ofstream out (fname_mat.c_str(), std::ios::binary);
CS_write (out, mat->getNRows(), mat->getRowPtrArray(), mat->getColIdxArray(), mat->getEntryArray());
out.close();
std::cout << "wrote " << fname_mat << " with " << mat->getNRows() << " rows and " << mat->getRowPtrArray()[mat->getNRows()] << " entries" << std::endl;
delete mat;
}
int main(int argc, char *argv[])
{
LOGOG_INITIALIZE();
TCLAP::CmdLine cmd("The purpose of this program is the speed test of sparse matrix vector multiplication (MVM) employing OpenMP technique, where the matrix is stored in CRS format. Before executing the MVM a nested dissection reordering is performed.", ' ', "0.1");
// Define a value argument and add it to the command line.
// A value arg defines a flag and a type of value that it expects,
// such as "-m matrix".
TCLAP::ValueArg<std::string> matrix_arg("m","matrix","input matrix file in CRS format",true,"","file name of the matrix in CRS format");
// Add the argument matrix_arg to the CmdLine object. The CmdLine object
// uses this Arg to parse the command line.
cmd.add( matrix_arg );
TCLAP::ValueArg<unsigned> n_cores_arg("p", "number-cores", "number of cores to use", true, 1, "number of cores");
cmd.add( n_cores_arg );
TCLAP::ValueArg<unsigned> n_mults_arg("n", "number-of-multiplications", "number of multiplications to perform", true, 10, "number of multiplications");
cmd.add( n_mults_arg );
TCLAP::ValueArg<std::string> output_arg("o", "output", "output file", false, "", "string");
cmd.add( output_arg );
TCLAP::ValueArg<bool> verbosity_arg("v", "verbose", "level of verbosity [0 very low information, 1 much information]", false, 0, "string");
cmd.add( verbosity_arg );
cmd.parse( argc, argv );
// read the number of multiplication to execute
unsigned n_mults (n_mults_arg.getValue());
std::string fname_mat (matrix_arg.getValue());
bool verbose (verbosity_arg.getValue());
FormatterCustom *custom_format (new FormatterCustom);
logog::Cout *logogCout(new logog::Cout);
logogCout->SetFormatter(*custom_format);
// read number of threads
unsigned n_threads (n_cores_arg.getValue());
#ifdef OGS_BUILD_INFO
INFO("%s was build with compiler %s", argv[0], CMAKE_CXX_COMPILER);
if (std::string(CMAKE_BUILD_TYPE).compare("Release") == 0) {
INFO("CXX_FLAGS: %s %s", CMAKE_CXX_FLAGS, CMAKE_CXX_FLAGS_RELEASE);
} else {
INFO("CXX_FLAGS: %s %s", CMAKE_CXX_FLAGS, CMAKE_CXX_FLAGS_DEBUG);
}
#endif
#ifdef UNIX
const size_t length(256);
char *hostname(new char[length]);
gethostname (hostname, length);
INFO("hostname: %s", hostname);
delete [] hostname;
#endif
// *** reading matrix in crs format from file
std::ifstream in(fname_mat.c_str(), std::ios::in | std::ios::binary);
double *A(NULL);
unsigned *iA(NULL), *jA(NULL), n;
if (in) {
if (verbose) {
INFO("reading matrix from %s ...", fname_mat.c_str());
}
BaseLib::RunTime timer;
timer.start();
CS_read(in, n, iA, jA, A);
timer.stop();
if (verbose) {
INFO("\t- took %e s", timer.elapsed());
}
} else {
ERR("error reading matrix from %s", fname_mat.c_str());
return -1;
}
unsigned nnz(iA[n]);
if (verbose) {
INFO("\tParameters read: n=%d, nnz=%d", n, nnz);
}
#ifdef _OPENMP
omp_set_num_threads(n_threads);
MathLib::CRSMatrixReorderedOpenMP mat(n, iA, jA, A);
#else
delete [] iA;
delete [] jA;
delete [] A;
ERROR("program is not using OpenMP");
return -1;
#endif
double *x(new double[n]);
double *y(new double[n]);
for (unsigned k(0); k<n; ++k)
x[k] = 1.0;
// create time measurement objects
BaseLib::RunTime run_timer;
BaseLib::CPUTime cpu_timer;
// calculate the nested dissection reordering
if (verbose) {
INFO("*** calculating nested dissection (ND) permutation of matrix ...");
}
run_timer.start();
cpu_timer.start();
MathLib::Cluster cluster_tree(n, iA, jA);
unsigned *op_perm(new unsigned[n]);
unsigned *po_perm(new unsigned[n]);
for (unsigned k(0); k<n; k++)
op_perm[k] = po_perm[k] = k;
cluster_tree.createClusterTree(op_perm, po_perm, 1000);
cpu_timer.stop();
run_timer.stop();
if (verbose) {
INFO("\t[ND] - took %e sec \t%e sec", cpu_timer.elapsed(), run_timer.elapsed());
}
// applying the nested dissection reordering
if (verbose) {
INFO("\t[ND] applying nested dissection permutation to FEM matrix ... ");
}
run_timer.start();
cpu_timer.start();
mat.reorderMatrix(op_perm, po_perm);
cpu_timer.stop();
run_timer.stop();
if (verbose) {
INFO("\t[ND]: - took %e sec\t%e sec", cpu_timer.elapsed(), run_timer.elapsed());
}
if (verbose) {
INFO("*** %d matrix vector multiplications (MVM) with Toms amuxCRS (%d threads)... ", n_mults, n_threads);
}
run_timer.start();
cpu_timer.start();
for (size_t k(0); k<n_mults; k++) {
mat.amux (1.0, x, y);
}
cpu_timer.stop();
run_timer.stop();
if (verbose) {
INFO("\t[MVM] - took %e sec cpu time, %e sec run time", cpu_timer.elapsed(), run_timer.elapsed());
}
delete [] x;
delete [] y;
delete custom_format;
delete logogCout;
LOGOG_SHUTDOWN();
return 0;
}
int main(int argc, char *argv[])
{
LOGOG_INITIALIZE();
TCLAP::CmdLine cmd("Simple matrix vector multiplication test employing pthreads", ' ', "0.1");
// Define a value argument and add it to the command line.
// A value arg defines a flag and a type of value that it expects,
// such as "-m matrix".
TCLAP::ValueArg<std::string> matrix_arg("m", "matrix", "input matrix file", true, "", "string");
// Add the argument mesh_arg to the CmdLine object. The CmdLine object
// uses this Arg to parse the command line.
cmd.add( matrix_arg );
TCLAP::ValueArg<unsigned> n_cores_arg("p", "number-cores", "number of cores to use", false, 1, "number");
cmd.add( n_cores_arg );
TCLAP::ValueArg<unsigned> n_mults_arg("n", "number-of-multiplications", "number of multiplications to perform", true, 10, "number");
cmd.add( n_mults_arg );
TCLAP::ValueArg<std::string> output_arg("o", "output", "output file", false, "", "string");
cmd.add( output_arg );
TCLAP::ValueArg<bool> verbosity_arg("v", "verbose", "level of verbosity [0 very low information, 1 much information]", false, 0, "string");
cmd.add( verbosity_arg );
cmd.parse( argc, argv );
std::string fname_mat (matrix_arg.getValue());
FormatterCustom *custom_format (new FormatterCustom);
logog::Cout *logogCout(new logog::Cout);
logogCout->SetFormatter(*custom_format);
logog::LogFile *logog_file(NULL);
if (! output_arg.getValue().empty()) {
logog_file = new logog::LogFile(output_arg.getValue().c_str());
logog_file->SetFormatter( *custom_format );
}
#ifdef OGS_BUILD_INFO
INFO("%s was build with compiler %s", argv[0], CMAKE_CXX_COMPILER);
#ifdef CMAKE_BUILD_TYPE
if (std::string(CMAKE_BUILD_TYPE).compare("Release") == 0) {
INFO("CXX_FLAGS: %s %s", CMAKE_CXX_FLAGS, CMAKE_CXX_FLAGS_RELEASE);
} else {
INFO("CXX_FLAGS: %s %s", CMAKE_CXX_FLAGS, CMAKE_CXX_FLAGS_DEBUG);
}
#else
INFO("CXX_FLAGS: %s", CMAKE_CXX_FLAGS);
#endif
#endif
#ifdef UNIX
const int max_host_name_len (255);
char *hostname(new char[max_host_name_len]);
if (gethostname(hostname, max_host_name_len) == 0)
INFO("hostname: %s", hostname);
delete [] host_name_len;
#endif
// *** reading matrix in crs format from file
std::ifstream in(fname_mat.c_str(), std::ios::in | std::ios::binary);
double *A(NULL);
unsigned *iA(NULL), *jA(NULL), n;
if (in) {
INFO("reading matrix from %s ...", fname_mat.c_str());
BaseLib::RunTime timer;
timer.start();
CS_read(in, n, iA, jA, A);
timer.stop();
INFO("\t- took %e s", timer.elapsed());
} else {
ERR("error reading matrix from %s", fname_mat.c_str());
return -1;
}
unsigned nnz(iA[n]);
INFO("\tParameters read: n=%d, nnz=%d", n, nnz);
#ifdef HAVE_PTHREADS
unsigned n_threads(n_cores_arg.getValue());
MathLib::CRSMatrixPThreads<double> mat (n, iA, jA, A, n_threads);
double *x(new double[n]);
double *y(new double[n]);
for (unsigned k(0); k<n; ++k)
x[k] = 1.0;
// read the number of multiplication to execute
unsigned n_mults (n_mults_arg.getValue());
INFO("*** %d matrix vector multiplications (MVM) with Toms amuxCRS (%d threads) ...", n_mults, n_threads);
BaseLib::RunTime run_timer;
BaseLib::CPUTime cpu_timer;
run_timer.start();
cpu_timer.start();
for (size_t k(0); k<n_mults; k++) {
mat.amux (1.0, x, y);
}
cpu_timer.stop();
run_timer.stop();
INFO("\t[MVM] - took %e sec cpu time, %e sec run time", cpu_timer.elapsed(), run_timer.elapsed());
delete [] x;
delete [] y;
#endif
delete custom_format;
delete logogCout;
delete logog_file;
LOGOG_SHUTDOWN();
return 0;
}