void linear_population_growth_generator::parseConfig( boost::property_tree::ptree & config ) {
if( config.get_child_optional( "A" ) == boost::none ) {
config.put( "A", m_A);
} else {
m_A = config.get<double>( "A", m_A );
}
if( config.get_child_optional( "B" ) == boost::none ) {
config.put("B", m_B );
} else {
m_B = config.get<double>( "B", m_B );
}
}
void Key::serialize(boost::property_tree::ptree& node)
{
node.put("<xmlattr>.keyStorageType", d_key_storage->getType());
node.put("IsCiphered", (d_storeCipheredData && !d_isEmpty));
cipherKeyData(node);
d_key_storage->serialize(node);
}
void Key::cipherKeyData(boost::property_tree::ptree& node)
{
if (!d_storeCipheredData || d_isEmpty)
{
node.put("Data", toString());
}
else
{
std::string secureKey = ((d_cipherKey == "") ? Key::secureAiKey : d_cipherKey);
openssl::AESSymmetricKey aes = openssl::AESSymmetricKey::createFromPassphrase(secureKey);
openssl::AESInitializationVector iv = openssl::AESInitializationVector::createNull();
openssl::AESCipher aescipher;
std::vector<unsigned char> divaesbuf;
std::string strdata = "Data";
std::vector<unsigned char> keynamebuf = std::vector<unsigned char>(strdata.begin(), strdata.end());
keynamebuf.resize(32, 0x00);
aescipher.cipher(keynamebuf, divaesbuf, aes, iv, false);
openssl::AESSymmetricKey divaes = openssl::AESSymmetricKey::createFromData(divaesbuf);
strdata = toString();
std::vector<unsigned char> keybuf = std::vector<unsigned char>(strdata.begin(), strdata.end());
std::vector<unsigned char> cipheredkey;
aescipher.cipher(keybuf, cipheredkey, divaes, iv, true);
node.put("Data", BufferHelper::toBase64(cipheredkey));
}
}
void ServerOptions::save(boost::property_tree::ptree& pt) const
{
pt.put("hashaid.charset", this->get<std::string>("charset"));
pt.put("hashaid.length", this->get<unsigned int>("length"));
if (this->is_set("salt"))
pt.put("hashaid.salt", this->get<std::string>("salt"));
pt.put("hashaid.type", this->get<std::string>("type"));
}
void ValueDataField::serialize(boost::property_tree::ptree& node)
{
DataField::serialize(node);
node.put("IsFixedField", d_isFixedField);
node.put("IsIdentifier", d_isIdentifier);
node.put("DataRepresentation", d_dataRepresentation->getType());
node.put("DataType", d_dataType->getType());
node.put("Length", d_length);
}
void
OpusComponent::save( boost::property_tree::ptree& pt )
{
pt.put( "opus.eads.component." + M_name + ".name", M_name );
pt.put( "opus.eads.component." + M_name + ".k", M_k );
pt.put( "opus.eads.component." + M_name + ".rhoC", M_rhoC );
pt.put( "opus.eads.component." + M_name + ".Q", M_Q );
pt.put( "opus.eads.component." + M_name + ".h", M_h );
pt.put( "opus.eads.component." + M_name + ".e", M_e );
}
void ISO7816ReaderUnitConfiguration::serialize(boost::property_tree::ptree& node)
{
node.put("SAMType", d_sam_type);
node.put("SAMReaderName", d_sam_reader_name);
boost::property_tree::ptree knode;
knode.put("KeyNo", d_keyno_unlock);
if (d_sam_key_unlock)
{
d_sam_key_unlock->serialize(knode);
}
node.add_child("SAMKey", knode);
}
void SortedAlleleAlphabet2::logState( boost::property_tree::ptree & log ) {
std::string key = "symbol_database";
log.put( key + ".count", m_db.size() );
log.put( key + ".active_count", m_db.size() - m_free_list.count());
log.put( key + ".symbol_per_block", bitset_type::bits_per_block );
log.put( key + ".max_block_per_region", (m_db.size() / bitset_type::bits_per_block) + 1 );
std::ostringstream oss;
for( unsigned int i = 0; i < m_db.size(); ++i ) {
if( !m_free_list[i] ) {
oss.str("");
oss.clear();
oss << ".symbol." << i;
log.put( key + oss.str(), m_db[i].first );
}
}
variant_db_t::iterator first = m_db.begin();
/*
free_ranges::iterator it = m_free_ranges.begin();
boost::property_tree::ptree fr;
while( it != m_free_ranges.end() ) {
boost::property_tree::ptree p, q, r, s, t;
p.put("", it->first.lower() );
q.put("", it->first.upper() );
r.push_back( std::make_pair("", p));
r.push_back( std::make_pair("", q));
index_interval_type::iterator idx_it = it->second.begin();
while( idx_it != it->second.end() ) {
boost::property_tree::ptree _p, _q, _s;
_p.put("", idx_it->lower() );
_q.put("", idx_it->upper() );
_s.push_back( std::make_pair( "", _p ) );
_s.push_back( std::make_pair( "", _q ) );
s.push_back( std::make_pair("", _s));
++idx_it;
}
t.push_back( std::make_pair( "", r ) );
t.push_back( std::make_pair( "", s ) );
fr.push_back( std::make_pair( "", t ));
++it;
}
log.add_child( key + ".free_ranges", fr );
*/
}
void ISO7816ReaderUnitConfiguration::serialize(boost::property_tree::ptree& node)
{
node.put("SAMType", d_sam_type);
node.put("SAMReaderName", d_sam_reader_name);
boost::property_tree::ptree knode;
knode.put("KeyNo", d_keyno_unlock);
if (d_sam_key_unlock)
{
d_sam_key_unlock->serialize(knode);
}
node.add_child("SAMKey", knode);
node.put("CheckSAMReaderIsAvailable", d_check_sam_reader_available);
node.put("AutoConnectToSAMReader", d_auto_connect_sam_reader);
}
void CTopoRequirement::saveToPropertyTree(boost::property_tree::ptree& _pt)
{
try
{
std::string tag("topology.declrequirement.<xmlattr>");
_pt.put(tag + ".name", getName());
_pt.put(tag + ".value", getValue());
_pt.put(tag + ".type", RequirementTypeToTag(getRequirementType()));
}
catch (exception& error) // ptree_error, runtime_error
{
throw logic_error("Unable to save requirement " + getName() + " error:" + error.what());
}
}
void Key::serialize(boost::property_tree::ptree& node)
{
node.put("<xmlattr>.keyStorageType", d_key_storage->getType());
if (d_key_diversification)
{
boost::property_tree::ptree newnode;
newnode.put("<xmlattr>.keyDiversificationType", d_key_diversification->getType());
d_key_diversification->serialize(newnode);
node.add_child("KeyDiversification", newnode);
}
node.put("IsCiphered", (d_storeCipheredData && !d_isEmpty));
cipherKeyData(node);
d_key_storage->serialize(node);
}
void ReaderUnit::serialize(boost::property_tree::ptree& node)
{
node.put("<xmlattr>.type", getReaderProvider()->getRPType());
d_readerUnitConfig->serialize(node);
if (getDataTransport())
{
node.put("TransportType", getDataTransport()->getTransportType());
getDataTransport()->serialize(node);
}
else
{
node.put("TransportType", "");
}
}
void recordResults( boost::property_tree::ptree & log ) {
typedef ac::accumulator_set< size_type, ac::stats< ac::tag::min, ac::tag::mean, ac::tag::max, ac::tag::variance, ac::tag::median, ac::tag::count > > accumulator_t;
accumulator_t col_accum, row_accum;
boost::property_tree::ptree dist, lfreq;
// maximum frequency for an allele is bounded by the number of sequences (rows) in the population
std::vector< size_type > freq( m_indices.size(), 0 );
// evaluate allele (column) statistics
size_type i = 0;
while( i < m_column_margin_size ) {
size_type v = m_column_margin[i++];
clotho::utility::add_value_array( dist, v );
col_accum( v );
freq[v]++;
}
clotho::utility::add_value_array(lfreq, freq.begin(), freq.end() );
log.put_child( "distribution", dist );
log.put_child( "frequency_distribution", lfreq );
log.put( "stats.sequences_per_allele.min", ac::min( col_accum ) );
log.put( "stats.sequences_per_allele.max", ac::max( col_accum ) );
log.put( "stats.sequences_per_allele.mean", ac::mean( col_accum ) );
log.put( "stats.sequences_per_allele.median", ac::median( col_accum ) );
log.put( "stats.sequences_per_allele.variance", ac::variance( col_accum ) );
log.put( "stats.sequences_per_allele.total", ac::count(col_accum) );
// evaluate sequence (row) statistics
i = 0;
while( i < m_row_margin_size ) {
if( m_indices.test(i) ) {
row_accum( m_row_margin[ i ] );
}
++i;
}
log.put( "stats.alleles_per_sequence.min", ac::min( row_accum ) );
log.put( "stats.alleles_per_sequence.max", ac::max( row_accum ) );
log.put( "stats.alleles_per_sequence.mean", ac::mean( row_accum ) );
log.put( "stats.alleles_per_sequence.median", ac::median( row_accum ) );
log.put( "stats.alleles_per_sequence.variance", ac::variance( row_accum ) );
log.put( "stats.alleles_per_sequence.total", ac::count(row_accum) );
}
void rai_daemon::daemon_config::serialize_json (boost::property_tree::ptree & tree_a)
{
tree_a.put ("version", "2");
tree_a.put ("rpc_enable", rpc_enable);
boost::property_tree::ptree rpc_l;
rpc.serialize_json (rpc_l);
tree_a.add_child ("rpc", rpc_l);
boost::property_tree::ptree node_l;
node.serialize_json (node_l);
tree_a.add_child ("node", node_l);
tree_a.put ("opencl_enable", opencl_enable);
boost::property_tree::ptree opencl_l;
opencl.serialize_json (opencl_l);
tree_a.add_child ("opencl", opencl_l);
}
void CContentParser::ParseItem(std::string& sSource, boost::property_tree::ptree& xmlResult)
{
static boost::regex expression(Settings::Instance().GetItemExpression());
// Контейнер для значений
std::vector< std::string > vecRawValues;
if (!boost::regex_split(std::back_inserter(vecRawValues), sSource, expression))
throw std::runtime_error("Failed to parse item.");
for (unsigned int i = 0; i < vecRawValues.size(); ++i)
{
std::string sName = ms_pNames[i];
if (sName.empty())
continue;
std::string& sToken = vecRawValues[i];
if (!sToken.empty())
{
if (sName == "phone")
ParsePhone(sToken);
else
{
boost::algorithm::trim(sToken);
if (sToken[sToken.size() - 1] == ',')
boost::algorithm::erase_last(sToken, ",");
}
xmlResult.put(sName, sToken);
}
}
}
void updateOnly(boost::property_tree::ptree &dest, bool ignoreEmptyUpdates, const boost::property_tree::ptree::path_type &childPath, const boost::property_tree::ptree &child) {
if(ignoreEmptyUpdates && (child.data().empty() || child.data().find_first_not_of(" \n\t\r") == std::string::npos)) return;
if(!dest.get_optional<std::string>(childPath)) {
throw PropertyTree::KeyNotFoundException(std::string("Could not find the destination '") + childPath.dump() + "' to update with '" + child.data() + "'.");
}
dest.put(childPath, child.data());
}
bool CSaveGameController::saveXMLTree(boost::property_tree::ptree &pt)
{
// Write the xml-file
using boost::property_tree::ptree;
#if BOOST_VERSION >= 105600
boost::property_tree::xml_writer_settings<std::string> settings('\t', 1);
#else
boost::property_tree::xml_writer_settings<char> settings('\t', 1);
#endif
// The savegame internal name
pt.put("GameState.<xmlattr>.name", m_statename);
std::ofstream StateFile;
bool open = OpenGameFileW( StateFile, m_stateXMLfilename, std::ofstream::binary );
if (!open)
{
std::string fullpath = GetFullFileName(m_stateXMLfilename);
gLogging.textOut("Error saving \"" + fullpath + "\". Please check the status of that path.\n" );
return false;
}
write_xml( StateFile, pt, settings );
return true;
}
static std::string
loadFile (boost::property_tree::ptree &config,
const boost::filesystem::path &file)
{
boost::filesystem::path extension = file.extension();
boost::filesystem::path extension2 = file.stem().extension();
std::string fileName = file.filename().string();
boost::property_tree::ptree readConfig;
if (extension2.string() == ".conf") {
if (extension.string() == ".json") {
boost::property_tree::read_json (file.string(), readConfig);
} else if (extension.string() == ".info") {
boost::property_tree::read_info (file.string(), readConfig);
} else if (extension.string() == ".ini") {
boost::property_tree::read_ini (file.string(), readConfig);
} else if (extension.string() == ".xml") {
boost::property_tree::read_xml (file.string(), readConfig);
} else {
throw ParseException ("Unknonw file format");
}
} else {
throw ParseException ("Unknonw file format");
}
mergePropertyTrees (config, readConfig);
config.put ("configPath", file.parent_path().string() );
fileName = fileName.substr (0, fileName.size() - extension.string().size() );
fileName = fileName.substr (0, fileName.size() - extension2.string().size() );
return fileName;
}
/*******************************************************************************
Function: nmbls::simpletemplate::enterfor
Description: Whilst rendering parse a for section, it will bomb out after one
itteration if no end is found. For command format
for i = lowervariable:uppervariable
for i = lowervariable:increby:uppervariable
Date: 15.12.2017
Author: Nick Knight
*******************************************************************************/
nmbls::simpletemplatechunklist::iterator nmbls::simpletemplate::enterfor( boost::property_tree::ptree &tree, simpletemplatechunklist::iterator start, std::string &out )
{
std::string command = boost::algorithm::join( start->command, "" );
std::vector < std::string > parts;
boost::split( parts, command, boost::is_any_of( "=:" ) );
int incrby = 1;
int endi = 0;
if( 4 == parts.size() )
{
incrby = std::stoi( parts[ 2 ] );
endi = std::stoi( parts[ 3 ] );
}
else
{
endi = std::stoi( parts[ 2 ] );
}
start++;
simpletemplatechunklist::iterator it;
for ( int starti = std::stoi( parts[ 1 ] ); starti <= endi; starti += incrby )
{
tree.put( parts[ 0 ], starti );
it = this->render( tree, start, out );
}
return it;
}
bool rai_daemon::daemon_config::deserialize_json (bool & upgraded_a, boost::property_tree::ptree & tree_a)
{
auto error (false);
try
{
if (!tree_a.empty ())
{
auto version_l (tree_a.get_optional <std::string> ("version"));
if (!version_l)
{
tree_a.put ("version", "1");
version_l = "1";
}
upgraded_a |= upgrade_json (std::stoull (version_l.get ()), tree_a);
rpc_enable = tree_a.get <bool> ("rpc_enable");
auto rpc_l (tree_a.get_child ("rpc"));
error |= rpc.deserialize_json (rpc_l);
auto & node_l (tree_a.get_child ("node"));
error |= node.deserialize_json (upgraded_a, node_l);
opencl_enable = tree_a.get <bool> ("opencl_enable");
auto & opencl_l (tree_a.get_child ("opencl"));
error |= opencl.deserialize_json (opencl_l);
}
else
{
upgraded_a = true;
serialize_json (tree_a);
}
}
catch (std::runtime_error const &)
{
error = true;
}
return error;
}
void PipelineWriter::write_option_ptree(boost::property_tree::ptree& tree, const Options& opts)
{
boost::property_tree::ptree m_tree = opts.toPTree();
boost::property_tree::ptree::const_iterator iter = m_tree.begin();
while (iter != m_tree.end())
{
if (iter->first != "Option")
throw pdal_error("malformed Options ptree");
const boost::property_tree::ptree& optionTree = iter->second;
// we want to create this:
// ...
// <Option name="file">foo.las</Option>
// ...
const std::string& name = optionTree.get_child("Name").get_value<std::string>();
const std::string& value = optionTree.get_child("Value").get_value<std::string>();
boost::property_tree::ptree& subtree = tree.put("Option", value);
subtree.put("<xmlattr>.name", name);
++iter;
}
return;
}
void Set::convert_colour( bp::ptree& ptree , const std::string& name )
{
auto value = ptree.get_optional<std::string>(name);
if( !value ) return;
auto out = convert_colour( *value );
ptree.put( name , out );
}
void Set::convert_float( bp::ptree& ptree , const std::string& name )
{
auto value = ptree.get_optional<std::string>(name);
if( !value ) return;
std::replace( value->begin() , value->end() , ',' , '.' );
ptree.put( name , value );
}
void
CVarPlatform::
serialize(boost::property_tree::ptree &node)
{
auto &posNode = node.put("target", "");
posNode.put("<xmlattr>.x", target.x);
posNode.put("<xmlattr>.y", target.y);
}
void Set::upgrade_option( bp::ptree& ptree , const std::string& prev , const std::string& curr )
{
auto opt = ptree.get_optional<std::string>( prev );
if( opt ) {
ptree.put( curr ,*opt);
ptree.erase( prev );
}
}
void write_sequence_section(boost::property_tree::ptree& data,
const std::string& key,
const std::vector<T>& values) {
for (size_t i = 0; i < values.size(); ++i) {
// make the 4 digit suffix
std::stringstream strm;
strm.fill('0'); strm.width(4); strm << i;
data.put(key + "." + strm.str(), values[i]);
}
}
void serialize_json (boost::property_tree::ptree & tree_a)
{
std::string wallet_string;
wallet.encode_hex (wallet_string);
tree_a.put ("version", "4");
tree_a.put ("wallet", wallet_string);
tree_a.put ("account", account.to_account ());
boost::property_tree::ptree node_l;
node.serialize_json (node_l);
tree_a.add_child ("node", node_l);
boost::property_tree::ptree rpc_l;
rpc.serialize_json (rpc_l);
tree_a.add_child ("rpc", rpc_l);
tree_a.put ("rpc_enable", rpc_enable);
tree_a.put ("opencl_enable", opencl_enable);
boost::property_tree::ptree opencl_l;
opencl.serialize_json (opencl_l);
tree_a.add_child ("opencl", opencl_l);
}
void URLConfig::ModifyCfg(bool is_https, uint16_t port)
{
std::stringstream ss;
m_is_https = is_https;
m_protocol = is_https ? HTTPS : HTTP;
m_port = port;
namespace PT = boost::property_tree;
try //Parse the configuration file
{
PT::ptree root;
root.put("protocol", m_protocol);
root.put("host", m_host);
root.put("port", m_port);
root.put("main_path", m_main_path);
root.put("login_path", m_login_path);
root.put("logout_path", m_logout_path);
root.put("menu_auth_path", m_menu_auth_path);
root.put("user_msg_count_path", m_user_msg_count_path);
root.put("user_msg_path", m_user_msg_path);
root.put("modify_pwd_path", m_modify_pwd_path);
PT::write_json(ss, root, true);
}
catch (...) // Catch the exception in order for logging.
{
LOG_ERROR(L"组Json字符流时出错，请检查！");
throw; // Don't swallow the exception!
}
try
{
AES_CBC::EncryptToFile(ss.str(), CIPHER_TEXT_FILE);
#ifdef _DEBUG // Save to plain text file under debug mode.
std::ofstream ofs(PLAIN_TEXT_FILE, std::ios_base::out | std::ios_base::binary);
if (!ofs.is_open())
throw std::exception(("打开文件" + PLAIN_TEXT_FILE + "失败！").c_str());
ofs << ss.str();
ofs.close();
#endif
}
catch (std::exception& ex)
{
LOG_ERROR(gbk_2_wstr(ex.what()));
}
}
void CompPathMove::writeToPropertyTree(boost::property_tree::ptree& propTree) const
{
if (m_pathId != "")
propTree.put("path_id", m_pathId);
if (m_repeat == true)
propTree.put("repeat", m_repeat);
if (m_resetAngle == true)
propTree.put("resetAngle", m_resetAngle);
//propTree.put("velocity", m_velocity);
foreach(const PathMovePoint& p, m_points)
{
ptree pointPropTree;
switch (p.mode)
{
case PathMovePoint::Uniform:
pointPropTree.add(cMode, cModeUniform);
if (p.time != 0.0f)
pointPropTree.add(cTime, p.time);
else if (p.linVel != 0.0f)
pointPropTree.add(cLinVel, p.linVel);
else
pointPropTree.add(cAngVel, p.angVel);
break;
case PathMovePoint::Accelerated:
pointPropTree.add(cMode, cModeAccelerated);
if (p.linAccel != 0.0f)
{
pointPropTree.add(cLinAccel, p.linAccel);
if (p.topLinVel != 0.0f)
pointPropTree.add(cTopLinVel, p.topLinVel);
}
else
{
pointPropTree.add(cAngAccel, p.angAccel);
if (p.topAngVel != 0.0f)
pointPropTree.add(cTopAngVel, p.topAngVel);
}
break;
}
propTree.add_child(cPoint, pointPropTree);
}
void ConstraintList::serialize(boost::property_tree::ptree& tree) const {
boost::property_tree::ptree expressions;
for (const auto& constraint : constraints_) {
boost::property_tree::ptree child;
child.put("op", constraint.op);
child.put("expr", constraint.expr);
expressions.push_back(std::make_pair("", child));
}
tree.add_child("list", expressions);
tree.put("affinity", columnTypeName(affinity));
}
