void Field::write(const H5::CommonFG &loc, const H5::H5Location &parent) const {
assert(invariant());
auto group = loc.createGroup(name());
H5::createAttribute(group, "type", project()->enumtype, "Field");
H5::createAttribute(group, "name", name());
// H5::createHardLink(group, "project", parent, ".");
H5::createHardLink(group, "..", parent, ".");
H5::createSoftLink(group, "project", "..");
// H5::createHardLink(group, "configuration", parent,
// "configurations/" + configuration->name());
H5::createSoftLink(group, "configuration",
"../configurations/" + configuration()->name());
H5::createHardLink(group, "project/configurations/" +
configuration()->name() + "/fields",
name(), group, ".");
// H5::createHardLink(group, "manifold", parent,
// "manifolds/" + manifold->name());
H5::createSoftLink(group, "manifold", "../manifolds/" + manifold()->name());
H5::createHardLink(group,
"project/manifolds/" + manifold()->name() + "/fields",
name(), group, ".");
// H5::createHardLink(group, "tangentspace", parent,
// "tangentspaces/" + tangentspace->name());
H5::createSoftLink(group, "tangentspace",
"../tangentspaces/" + tangentspace()->name());
H5::createHardLink(group, "project/tangentspaces/" + tangentspace()->name() +
"/fields",
name(), group, ".");
// H5::createHardLink(group, "tensortype", parent,
// "tensortypes/" + tensortype->name());
H5::createSoftLink(group, "tensortype",
"../tensortypes/" + tensortype()->name());
H5::createGroup(group, "discretefields", discretefields());
}
void ParameterValue::write(const H5::CommonFG &loc,
const H5::H5Location &parent) const {
assert(invariant());
auto group = loc.createGroup(name);
H5::createAttribute(group, "type", parameter.lock()->project.lock()->enumtype,
"ParameterValue");
H5::createAttribute(group, "name", name);
H5::createHardLink(group, "parameter", parent,
string("project/parameters/") + parameter.lock()->name);
switch (value_type) {
case type_empty:
// do nothing
break;
case type_int:
H5::createAttribute(group, "data", value_int);
break;
case type_double:
H5::createAttribute(group, "data", value_double);
break;
case type_string:
H5::createAttribute(group, "data", value_string);
break;
default:
assert(0);
}
group.createGroup("configurations");
}
void DiscretizationBlock::write(const H5::CommonFG &loc,
const H5::H5Location &parent) const {
assert(invariant());
auto group = loc.createGroup(name);
H5::createAttribute(
group, "type",
discretization.lock()->manifold.lock()->project.lock()->enumtype,
"DiscretizationBlock");
H5::createAttribute(group, "name", name);
H5::createHardLink(group, "discretization", parent, ".");
if (region.valid()) {
#warning "TODO: write using boxtype HDF5 type"
vector<hssize_t> offset = region.lower(), shape = region.shape();
std::reverse(offset.begin(), offset.end());
H5::createAttribute(group, "offset", offset);
std::reverse(shape.begin(), shape.end());
H5::createAttribute(group, "shape", shape);
}
if (active.valid()) {
// TODO write_active<0>(group, *this, active);
write_active<1>(group, *this, active);
write_active<2>(group, *this, active);
write_active<3>(group, *this, active);
write_active<4>(group, *this, active);
}
}
void Parameter::write(const H5::CommonFG &loc,
const H5::H5Location &parent) const {
assert(invariant());
auto group = loc.createGroup(name);
H5::createAttribute(group, "type", project.lock()->enumtype, "Parameter");
H5::createAttribute(group, "name", name);
H5::createHardLink(group, "project", parent, ".");
H5::createGroup(group, "parametervalues", parametervalues);
}
void TensorComponent::write(const H5::CommonFG &loc,
const H5::H5Location &parent) const {
assert(invariant());
auto group = loc.createGroup(name());
H5::createAttribute(group, "type", tensortype()->project()->enumtype,
"TensorComponent");
H5::createAttribute(group, "name", name());
// H5::createHardLink(group, "tensortype", parent, ".");
H5::createHardLink(group, "..", parent, ".");
H5::createSoftLink(group, "tensortype", "..");
H5::createAttribute(group, "storage_index", storage_index());
H5::createAttribute(group, "indexvalues", indexvalues());
}
void TensorType::write(const H5::CommonFG &loc,
const H5::H5Location &parent) const {
assert(invariant());
auto group = loc.createGroup(name());
H5::createAttribute(group, "type", project()->enumtype, "TensorType");
H5::createAttribute(group, "name", name());
// H5::createHardLink(group, "project", parent, ".");
H5::createHardLink(group, "..", parent, ".");
H5::createSoftLink(group, "project", "..");
H5::createAttribute(group, "dimension", dimension());
H5::createAttribute(group, "rank", rank());
H5::createGroup(group, "tensorcomponents", tensorcomponents());
// TODO: write storage_indices
}
void TangentSpace::write(const H5::CommonFG &loc,
const H5::H5Location &parent) const {
assert(invariant());
auto group = loc.createGroup(name);
H5::createAttribute(group, "type", project.lock()->enumtype, "TangentSpace");
H5::createAttribute(group, "name", name);
H5::createHardLink(group, "project", parent, ".");
H5::createHardLink(group, "configuration", parent,
string("configurations/") + configuration->name);
H5::createHardLink(group, string("project/configurations/") +
configuration->name + "/tangentspaces",
name, group, ".");
H5::createAttribute(group, "dimension", dimension);
H5::createGroup(group, "bases", bases);
group.createGroup("fields");
}
void Basis::write(const H5::CommonFG &loc, const H5::H5Location &parent) const {
assert(invariant());
auto group = loc.createGroup(name());
H5::createAttribute(group, "type", tangentspace()->project()->enumtype,
"Basis");
H5::createAttribute(group, "name", name());
// H5::createHardLink(group, "tangentspace", parent, ".");
H5::createHardLink(group, "..", parent, ".");
H5::createSoftLink(group, "tangentspace", "..");
// H5::createHardLink(group, "configuration", parent,
// string("project/configurations/") +
// configuration->name);
H5::createSoftLink(group, "configuration",
string("../project/configurations/") +
configuration()->name());
H5::createHardLink(group, string("tangentspace/project/configurations/") +
configuration()->name() + "/bases",
name(), group, ".");
H5::createGroup(group, "basisvectors", basisvectors());
// TODO: output directions
}
void Manifold::write(const H5::CommonFG &loc,
const H5::H5Location &parent) const {
assert(invariant());
auto group = loc.createGroup(name());
H5::createAttribute(group, "type", project()->enumtype, "Manifold");
H5::createAttribute(group, "name", name());
// H5::createHardLink(group, "project", parent, ".");
H5::createHardLink(group, "..", parent, ".");
H5::createSoftLink(group, "project", "..");
// H5::createHardLink(group, "configuration", parent,
// "configurations/" + configuration->name());
H5::createSoftLink(group, "configuration",
"../configurations/" + configuration()->name());
H5::createHardLink(group, "project/configurations/" +
configuration()->name() + "/manifolds",
name(), group, ".");
H5::createAttribute(group, "dimension", dimension());
H5::createGroup(group, "discretizations", discretizations());
H5::createGroup(group, "subdiscretizations", subdiscretizations());
group.createGroup("fields");
group.createGroup("coordinatesystems");
}
void SubDiscretization::write(const H5::CommonFG &loc,
const H5::H5Location &parent) const {
assert(invariant());
auto group = loc.createGroup(name());
H5::createAttribute(group, "type", manifold()->project()->enumtype,
"SubDiscretization");
H5::createAttribute(group, "name", name());
// H5::createHardLink(group, "manifold", parent, ".");
H5::createHardLink(group, "..", parent, ".");
H5::createSoftLink(group, "manifold", "..");
// H5::createHardLink(group, "parent_discretization", parent,
// string("discretizations/") +
// parent_discretization->name());
H5::createSoftLink(group, "parent_discretization",
string("../discretizations/") +
parent_discretization()->name());
H5::createHardLink(group, string("manifold/discretizations/") +
parent_discretization()->name() +
"/child_discretizations",
name(), group, ".");
// H5::createHardLink(group, "child_discretization", parent,
// string("discretizations/") +
// child_discretization->name());
H5::createSoftLink(group, "child_discretization",
string("../discretizations/") +
child_discretization()->name());
H5::createHardLink(group, string("manifold/discretizations/") +
child_discretization()->name() +
"/parent_discretizations",
name(), group, ".");
auto tmp_factor = factor();
std::reverse(tmp_factor.begin(), tmp_factor.end());
H5::createAttribute(group, "factor", tmp_factor);
auto tmp_offset = offset();
std::reverse(tmp_offset.begin(), tmp_offset.end());
H5::createAttribute(group, "offset", tmp_offset);
}