static void setLayerInfoFromCurrentExperiment(shared_ptr<NEAT::LayeredSubstrate<float> > substrate)
{
int experimentType = int(NEAT::Globals::getSingleton()->getParameterValue("ExperimentType")+0.001);
HCUBE::ExperimentRun experimentRun;
experimentRun.setupExperiment(experimentType,"");
substrate->setLayerInfo(
experimentRun.getExperiment()->getLayerInfo()
);
}
int HyperNEAT_main(int argc,char **argv) {
CommandLineParser commandLineParser(argc,argv);
// Quit if we don't have I/O/G
if (!commandLineParser.HasSwitch("-I") ||
!commandLineParser.HasSwitch("-O") ||
!commandLineParser.HasSwitch("-G")) {
cout << "./atari_generate [-R (seed)] -I (datafile) -O (outputfile) -G (ROMFile) [-P (populationfile) -F (fitnessprefix) [-E (evaluationFile)] ]\n";
cout << "\t(datafile) experiment data file - typically data/AtariExperiment.dat\n";
cout << "\t(outputfile) the next generation file to be created - typically generationXX.xml\n";
cout << "\t(populationfile) the current generation file (required when outputfile is > generation0) - typically generationXX(-1).xml.gz\n";
cout << "\t(fitnessprefix) used to locate the fitness files for individuals in the current generation (required for generation > 0) - typically fitness.XX.\n";
cout << "\t(evaluationfile) populationfile + fitness + speciation (output only - not required for next cycle) - typicall generationXX(-1).eval.xml\n";
return 0;
}
Globals *globals = Globals::init(commandLineParser.GetArgument("-I",0));
// Setup the experiment
int experimentType = int(globals->getParameterValue("ExperimentType") + 0.001);
HCUBE::ExperimentRun experimentRun;
string out_file = commandLineParser.GetArgument("-O",0);
experimentRun.setupExperiment(experimentType, out_file);
string rom_file = commandLineParser.GetArgument("-G",0);
// Is this an experiment in progress? If so we should load the current experiment
if (commandLineParser.HasSwitch("-P") &&
commandLineParser.HasSwitch("-F")) {
string populationFile = commandLineParser.GetArgument("-P",0);
string fitnessFunctionPrefix = commandLineParser.GetArgument("-F",0);
string evaluationFile = commandLineParser.GetSafeArgument("-E",0,"");
cout << "[HyperNEAT core] Population for existing generation created from: " << populationFile << endl;
experimentRun.createPopulationFromCondorRun(populationFile, fitnessFunctionPrefix, evaluationFile, rom_file);
} else {
cout << "[HyperNEAT core] Population for first generation created" << endl;
shared_ptr<Experiment> e = experimentRun.getExperiment();
if (experimentType == 30 || experimentType == 35 || experimentType == 36) {
shared_ptr<AtariExperiment> exp = static_pointer_cast<AtariExperiment>(e);
exp->initializeExperiment(rom_file.c_str());
} else if (experimentType == 31 || experimentType == 39 || experimentType == 40) {
shared_ptr<AtariNoGeomExperiment> exp = static_pointer_cast<AtariNoGeomExperiment>(e);
exp->initializeExperiment(rom_file.c_str());
} else if (experimentType == 32 || experimentType == 37 || experimentType == 38) {
shared_ptr<AtariFTNeatExperiment> exp = static_pointer_cast<AtariFTNeatExperiment>(e);
exp->initializeExperiment(rom_file.c_str());
} else if (experimentType == 33) {
// This is the Hybrid experiment but always starts as HyperNEAT
shared_ptr<AtariExperiment> exp = static_pointer_cast<AtariExperiment>(e);
exp->initializeExperiment(rom_file.c_str());
} else if (experimentType == 34) {
shared_ptr<AtariIntrinsicExperiment> exp = static_pointer_cast<AtariIntrinsicExperiment>(e);
exp->initializeExperiment(rom_file.c_str());
} else if (experimentType == 41) {
shared_ptr<AtariCMAExperiment> exp = static_pointer_cast<AtariCMAExperiment>(e);
exp->setResultsPath(out_file);
exp->initializeExperiment(rom_file.c_str());
}
experimentRun.createPopulation();
}
if (commandLineParser.HasSwitch("-R")) {
double seed = stringTo<double>(commandLineParser.GetArgument("-R",0));
globals->setParameterValue("RandomSeed",seed);
globals->initRandom();
}
experimentRun.startCondor();
NEAT::Globals::deinit();
}
int HyperNEAT_main(int argc,char **argv)
{
CommandLineParser commandLineParser(argc,argv);
//This is for memory debugging
//_CrtSetBreakAlloc(137405);
try
{
if(commandLineParser.HasSwitch("-I"))
{
string paramFileName = commandLineParser.GetSafeArgument("-I",0,"input.dat");
ifstream paramFile;
paramFile.open(paramFileName.c_str());
if(!paramFile)
{
cout << "The following parameter file does not exist: " << paramFileName << endl;
exit(3);
}
else
cout << "Using the following parameter file: " << paramFileName << endl;
}
if (argc<=1)
{
cout << "You must pass the parameters and the output file as command "
<< "parameters!\n";
}
else if (argc==2) //running post-hoc eval
{
//Run the post-hoc analysis on every generation
HCUBE::ExperimentRun experimentRun;
experimentRun.setupExperimentInProgress(string(argv[1]),"");
int numGenerations = experimentRun.getPopulation()->getGenerationCount();
HCUBE::Experiment *experiment = experimentRun.getExperiment()->clone();
if(false) //this block is for printing post hoc info on every generation, but not necessary for evaluating an org
{
#ifndef PRINT_GENCHAMPFITNESSVIAPOSTHOCEVAL
string outString = (erase_tail_copy(string(argv[1]),3)+string("_fitness.out"));
cout << "Creating file " << outString << endl;
ofstream outfile( outString.c_str() );
string previousSummary;
bool doOnce=false;
#endif
for (int generation=0;generation<numGenerations;generation++)
{
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
if ( generation &&
(*(experimentRun.getIndividual(generation,0).get())) == (*(experimentRun.getIndividual(generation-1,0).get())) )
{
#ifndef PRINT_GENCHAMPFITNESSVIAPOSTHOCEVAL
outfile << (generation+1) << ' ' << previousSummary << endl;
#endif
continue;
}
shared_ptr<NEAT::GeneticIndividual> indiv =
shared_ptr<NEAT::GeneticIndividual>(
new NEAT::GeneticIndividual(
*(experimentRun.getIndividual(generation,0).get())
)
);
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
//cout << "Beginning post-hoc evaluation " << (generation+1) << "/" << numGenerations << "...";
//experiment->processIndividualPostHoc(indiv);
//cout << "done!\n";
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
#ifndef PRINT_GENCHAMPFITNESSVIAPOSTHOCEVAL
if (indiv->getUserData())
{
if (!doOnce)
{
doOnce=true;
outfile
<< "#Generation: "
<< indiv->getUserData()->summaryHeaderToString()
<< endl;
}
previousSummary = indiv->getUserData()->summaryToString();
outfile << (generation+1) << ' ' << previousSummary << endl;
}
else
{
if (!doOnce)
{
doOnce=true;
outfile
<< "#Generation: "
<< "Fitness:"
<< endl;
}
previousSummary = toString(indiv->getFitness());
outfile << (generation+1) << ' ' << previousSummary << endl;
}
#endif
}
}
int generation = numGenerations-1; // jmc: interested in last generation (I don't know why it is -1)
// int generation = 0; // jmc: interested in first generation
cout << "Beginning post-hoc evaluation " << (generation) << "/" << numGenerations-1 << "...\n";
shared_ptr<NEAT::GeneticIndividual> indiv =
shared_ptr<NEAT::GeneticIndividual>(new NEAT::GeneticIndividual(*(experimentRun.getIndividual(generation,0).get())));
experiment->processIndividualPostHoc(indiv);
cout << "done!\n";
#if 0
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
if (indiv->getUserData())
{
if (!doOnce)
{
doOnce=true;
outfile
<< "#Generation: "
<< indiv->getUserData()->summaryHeaderToString()
<< endl;
}
previousSummary = indiv->getUserData()->summaryToString();
outfile << (generation+1) << ' ' << previousSummary << endl;
}
else
{
if (!doOnce)
{
doOnce=true;
outfile
<< "#Generation: "
<< "Fitness:"
<< endl;
}
previousSummary = toString(indiv->getFitness());
outfile << (generation+1) << ' ' << previousSummary << endl;
}
}
}
#endif
/*
cout << "Done with run! Running medium resolution tests...\n";
((HCUBE::FindClusterExperiment*)experiment)->increaseResolution();
{
string outString = (erase_tail_copy(string(argv[1]),4)+string("_midres.out"));
ofstream outfile( outString.c_str() );
cout << "Creating file " << outString << endl;
string previousSummary;
bool doOnce=false;
for (int generation=0;generation<numGenerations;generation++)
{
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
if ( generation &&
(*(experimentRun.getIndividual(generation,0).get())) == (*(experimentRun.getIndividual(generation-1,0).get())) )
{
outfile << (generation+1) << ' ' << previousSummary << endl;
continue;
}
shared_ptr<NEAT::GeneticIndividual> indiv =
shared_ptr<NEAT::GeneticIndividual>(
new NEAT::GeneticIndividual(
*(experimentRun.getIndividual(generation,0).get())
)
);
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
cout << "Beginning post-hoc evaluation " << (generation+1) << "/" << numGenerations << "...";
experiment->processIndividualPostHoc(indiv);
cout << "done!\n";
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
if (indiv->getUserData())
{
if (!doOnce)
{
doOnce=true;
outfile
<< "#Generation: "
<< indiv->getUserData()->summaryHeaderToString()
<< endl;
}
previousSummary = indiv->getUserData()->summaryToString();
outfile << (generation+1) << ' ' << previousSummary << endl;
}
}
}
*/
}
int HyperNEAT_main(int argc,char **argv)
{
//This is for memory debugging
//_CrtSetDbgFlag ( _CRTDBG_ALLOC_MEM_DF | _CRTDBG_LEAK_CHECK_DF );
//_CrtSetBreakAlloc(1378);
int retval=0;
CommandLineParser commandLineParser(argc,argv);
#if 1
#if 0
try
#endif
{
if (argc<=1)
{
#ifndef HCUBE_NOGUI
cout_ << "Starting wxEntry...\n";
retval = wxEntry(argc, argv);
#else
cout_ << "You must pass the parameters and the output file as command "
<< "parameters!\n";
cout_ << "(If you intended to run in GUI mode, please run cmake and set the USE_GUI flag to true)\n";
#endif
}
else if (argc==2)
{
//Run the post-hoc analysis on last generation
cout_ << "Running post-hoc analysis on: " << argv[1] << endl;
HCUBE::ExperimentRun experimentRun;
experimentRun.setupExperimentInProgress(
string(argv[1]),
""
);
int numGenerations = experimentRun.getPopulation()->getGenerationCount();
HCUBE::Experiment *experiment = experimentRun.getExperiment()->clone();
/*
{
string outString = (erase_tail_copy(string(argv[1]),4)+string("_fitness.out"));
cout_ << "Creating file " << outString << endl;
ofstream outfile( outString.c_str() );
string previousSummary;
bool doOnce=false;
for (int generation=0;generation<numGenerations;generation++)
{
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
if ( generation &&
(*(experimentRun.getIndividual(generation,0).get())) == (*(experimentRun.getIndividual(generation-1,0).get())) )
{
outfile << (generation+1) << ' ' << previousSummary << endl;
continue;
}
shared_ptr<NEAT::GeneticIndividual> indiv =
shared_ptr<NEAT::GeneticIndividual>(
new NEAT::GeneticIndividual(
*(experimentRun.getIndividual(generation,0).get())
)
);
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
cout_ << "Beginning fitness evaluation " << (generation+1) << "/" << numGenerations << "...";
cout_.flush();
experiment->addIndividualToGroup(indiv);
experiment->processGroup(experimentRun.getGeneration(generation));
experiment->clearGroup();
cout_ << "done!\n";
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
if (indiv->getUserData())
{
if (!doOnce)
{
doOnce=true;
outfile
<< "#Generation: "
<< indiv->getUserData()->summaryHeaderToString()
<< endl;
}
previousSummary = indiv->getUserData()->summaryToString();
outfile << (generation+1) << ' ' << previousSummary << endl;
}
else
{
throw CREATE_LOCATEDEXCEPTION_INFO("No user data!\n");
}
}
}
*/
{
string outString = (erase_tail_copy(string(argv[1]),3)+string("_fitness.out"));
cout_ << "Creating file " << outString << endl;
ofstream outfile( outString.c_str() );
string previousSummary;
bool doOnce=false;
int firstGen = 0;
//int firstGen = numGenerations-1;
for (int generation=firstGen;generation<numGenerations;generation++)
{
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
#if 0
if ( generation &&
(*(experimentRun.getIndividual(generation,0).get())) == (*(experimentRun.getIndividual(generation-1,0).get())) )
{
outfile << (generation+1) << ' ' << previousSummary << endl;
continue;
}
#endif
shared_ptr<NEAT::GeneticIndividual> indiv =
shared_ptr<NEAT::GeneticIndividual>(
new NEAT::GeneticIndividual(
*(experimentRun.getIndividual(generation,0).get())
)
);
if(generation!=firstGen)
{
shared_ptr<NEAT::GeneticIndividual> lastindiv =
shared_ptr<NEAT::GeneticIndividual>(
new NEAT::GeneticIndividual(
*(experimentRun.getIndividual(generation-1,0).get())
)
);
if(fabsf(indiv->getFitness()-lastindiv->getFitness())<1e-3)
{
//cout_ << "Skipping redundant individual\n";
continue;
}
}
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
//cout_ << "Beginning post-hoc evaluation " << (generation+1) << "/" << numGenerations << "...";
//experiment->processIndividualPostHoc(indiv);
//cout_ << "done!\n";
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
#if 0
if (indiv->getUserData().length())
{
if (!doOnce)
{
doOnce=true;
outfile
<< "#Generation: "
<< indiv->getUserData()
<< endl;
}
previousSummary = indiv->getUserData();
outfile << (generation+1) << ' ' << previousSummary << endl;
}
else
{
if (!doOnce)
{
doOnce=true;
outfile
<< "#Generation: "
<< "Fitness:"
<< endl;
}
previousSummary = toString(indiv->getFitness());
outfile << (generation+1) << ' ' << previousSummary << endl;
}
#endif
cout_ << "Beginning post-hoc evaluation " << (generation+1) << "/" << numGenerations << "...";
experiment->processIndividualPostHoc(indiv);
cout_ << indiv->getUserData() << endl;
cout_ << "done!\n";
//CREATE_PAUSE(string("Error!: ")+toString(__LINE__));
#if 0
if (indiv->getUserData())
{
if (!doOnce)
{
doOnce=true;
outfile
<< "#Generation: "
<< indiv->getUserData()->summaryHeaderToString()
<< endl;
}
previousSummary = indiv->getUserData()->summaryToString();
outfile << (generation+1) << ' ' << previousSummary << endl;
}
else
{
if (!doOnce)
{
doOnce=true;
outfile
<< "#Generation: "
<< "Fitness:"
<< endl;
}
previousSummary = toString(indiv->getFitness());
outfile << (generation+1) << ' ' << previousSummary << endl;
}
#endif
}
}
}
else if (
commandLineParser.HasSwitch("-P")
)
{
string inputFile = commandLineParser.GetSafeArgument("-P",0,"input.dat");
//Run the post-hoc analysis
cout_ << "Running post-hoc analysis on: " << inputFile << endl;
HCUBE::ExperimentRun experimentRun;
experimentRun.setupExperimentInProgress(
inputFile,
""
);
int numGenerations = experimentRun.getPopulation()->getGenerationCount();
HCUBE::Experiment *experiment = experimentRun.getExperiment()->clone();
{
int firstGen = 0;
//int firstGen = numGenerations-1;
bool ignoreFirstIfElitism=false;
if(commandLineParser.HasSwitch("-G"))
{
firstGen = atoi(commandLineParser.GetSafeArgument("-G",0,"0").c_str())-1;
if(firstGen<numGenerations)
numGenerations = firstGen+1;
}
if(firstGen && commandLineParser.HasSwitch("-S"))
ignoreFirstIfElitism=true;
for (int generation=firstGen;generation<numGenerations;generation++)
{
shared_ptr<NEAT::GeneticIndividual> indiv =
shared_ptr<NEAT::GeneticIndividual>(
new NEAT::GeneticIndividual(
*(experimentRun.getIndividual(generation,0).get())
)
);
if(generation!=firstGen || ignoreFirstIfElitism)
{
shared_ptr<NEAT::GeneticIndividual> lastindiv =
shared_ptr<NEAT::GeneticIndividual>(
new NEAT::GeneticIndividual(
*(experimentRun.getIndividual(generation-1,0).get())
)
);
if(fabsf(indiv->getFitness()-lastindiv->getFitness())<1e-3)
{
//cout_ << "Skipping redundant individual\n";
continue;
}
}
cout_ << "Beginning post-hoc evaluation " << (generation+1) << "/" << numGenerations << "..." << endl;
experiment->processIndividualPostHoc(indiv);
cout_ << indiv->getUserData() << endl;
cout_ << "done!\n";
}
}
}
else if(
commandLineParser.HasSwitch("-I") &&
commandLineParser.HasSwitch("-O")
)
{
NEAT::Globals::init(commandLineParser.GetSafeArgument("-I",0,"input.dat"));
if(commandLineParser.HasSwitch("-R"))
{
NEAT::Globals::getSingleton()->seedRandom(stringTo<unsigned int>(commandLineParser.GetSafeArgument("-R",0,"0")));
}
int experimentType = int(NEAT::Globals::getSingleton()->getParameterValue("ExperimentType")+0.001);
cout_ << "Loading Experiment: " << experimentType << endl;
HCUBE::ExperimentRun experimentRun;
experimentRun.setupExperiment(experimentType,commandLineParser.GetSafeArgument("-O",0,"output.xml"));
cout_ << "Experiment set up\n";
experimentRun.createPopulation();
experimentRun.setCleanup(true);
cout_ << "Population Created\n";
experimentRun.start();
}
else if(
commandLineParser.HasSwitch("-C")
)
{
HCUBE::ExperimentRun experimentRun;
string backupFile = commandLineParser.GetArgument("-C",0);
string outputFile = backupFile.substr(0,backupFile.length()-14);
//This also calls NEAT::Globals::init(...)
experimentRun.setupExperimentInProgress(backupFile,outputFile);
cout_ << "Experiment set up\n";
experimentRun.setCleanup(true);
experimentRun.start();
}
else
{
cout_ << "Syntax for passing command-line options to HyperNEAT (do not actually type '(' or ')' ):\n";
cout_ << "./HyperNEAT [-R (seed)] -I (datafile) -O (outputfile)\n";
}
}
#if 0
catch (const std::exception &ex)
{
cout_ << "CAUGHT ERROR AT " << __FILE__ << " : " << __LINE__ << endl;
cout_ << "An exception has occured: " << ex.what() << endl;
}
catch (string s)
{
cout_ << "CAUGHT ERROR AT " << __FILE__ << " : " << __LINE__ << endl;
cout_ << "An exception has occured: " << s << endl;
}
catch (...)
{
cout_ << "CAUGHT ERROR AT " << __FILE__ << " : " << __LINE__ << endl;
cout_ << "An error has occured!\n";
}
#endif
NEAT::Globals::deinit();
#endif
return retval;
}