Exemple #1
0
//-----------------------------------------------------------------------------
bool joint_c::fetch( Reveal::Core::joint_ptr joint, mongo::BSONObj bson ) {

  assert( joint );

  joint->id = bson.getField( FIELD_ID ).String();

  mongo::BSONObj bson_q = bson.getObjectField( FIELD_STATE_POSITION );
  std::vector<mongo::BSONElement> v_q;
  bson_q.elems( v_q );

  for( unsigned i = 0; i < v_q.size(); i++ )
    joint->state.q( i, v_q[i].Double() );

  mongo::BSONObj bson_dq = bson.getObjectField( FIELD_STATE_VELOCITY );

  std::vector<mongo::BSONElement> v_dq;
  bson_dq.elems( v_dq );

  for( unsigned i = 0; i < v_dq.size(); i++ )
    joint->state.dq( i, v_dq[i].Double() );

  mongo::BSONObj bson_u = bson.getObjectField( FIELD_CONTROL );
  std::vector<mongo::BSONElement> v_u;
  bson_u.elems( v_u );

  for( unsigned i = 0; i < v_u.size(); i++ )
    joint->control.u( i, v_u[i].Double() );

  return true;
}
Exemple #2
0
RepoBSON::RepoBSON(
	const mongo::BSONObj &obj,
	const std::unordered_map<std::string, std::pair<std::string, std::vector<uint8_t>>> &binMapping)
	: mongo::BSONObj(obj),
	bigFiles(binMapping)
{
	std::vector<std::pair<std::string, std::string>> existingFiles;

	if (bigFiles.size() > 0)
	{
		mongo::BSONObjBuilder builder, arrbuilder;

		for (const auto & pair : bigFiles)
		{
			//append field name :file name
			arrbuilder << pair.first << pair.second.first;
		}

		if (obj.hasField(REPO_LABEL_OVERSIZED_FILES))
		{
			arrbuilder.appendElementsUnique(obj.getObjectField(REPO_LABEL_OVERSIZED_FILES));
		}


		builder.append(REPO_LABEL_OVERSIZED_FILES, arrbuilder.obj());
		builder.appendElementsUnique(obj);

		*this = builder.obj();
		bigFiles = binMapping;
	}
	


}
std::string CjsonExporter::toCjson(const mongo::BSONObj &mongoChemObj)
{
  // Follow the database link and convert to CJSON.
  MongoDatabase *db = MongoDatabase::instance();
  if (!db)
    return "";

  mongo::BSONObj structure = mongoChemObj.getObjectField("3dStructure");
  if (!structure.hasField("$ref") || !structure.hasField("$id")
      || !structure.getField("$id").isSimpleType()) {
    return "";
  }
  std::auto_ptr<mongo::DBClientCursor> cursor =
      db->query(db->databaseName() + "." + structure.getStringField("$ref"),
                QUERY("_id" << structure.getField("$id").OID()), 1);
  mongo::BSONObj object;
  if (cursor->more())
    object = cursor->next();
  else
    return "";

  std::vector<std::string> toCopy;
  toCopy.push_back("name");
  toCopy.push_back("inchi");
  toCopy.push_back("formula");
  toCopy.push_back("properties");
  mongo::BSONObjBuilder builder;

  for (size_t i = 0; i < toCopy.size(); i++) {
    mongo::BSONElement field = mongoChemObj.getField(toCopy[i]);
    if (!field.eoo())
      builder.append(field);
  }
  toCopy.clear();
  toCopy.push_back("atoms");
  toCopy.push_back("bonds");
  for (size_t i = 0; i < toCopy.size(); i++) {
    mongo::BSONElement field = object.getField(toCopy[i]);
    if (!field.eoo())
      builder.append(field);
  }

  // Add the chemical JSON version field.
  builder.append("chemical json", 0);

  mongo::BSONObj obj = builder.obj();

  return obj.jsonString(mongo::Strict);
}
Exemple #4
0
//-----------------------------------------------------------------------------
bool joint_c::fetch( Reveal::Core::model_ptr model, mongo::BSONObj bson_model ) {

  Reveal::Core::joint_ptr joint;
  mongo::BSONObj bson_joints;
  std::vector<mongo::BSONElement> v_joints;

  bson_joints = bson_model.getObjectField( DOCUMENT );
  bson_joints.elems( v_joints );

  for( unsigned i = 0; i < v_joints.size(); i++ ) {
    joint = Reveal::Core::joint_ptr( new Reveal::Core::joint_c() );

    fetch( joint, v_joints[i].Obj() );

    model->joints.push_back( joint );
  }

  return true;
}