itk::Object::Pointer QmitkAffineTransformView::GetTransform2(itk::Image<TPixelType, VImageDimension>* /*itkImage1*/)
{
typedef typename itk::Image< TPixelType, VImageDimension > FixedImageType;
typedef typename itk::Image< TPixelType, VImageDimension > MovingImageType;
typename FixedImageType::Pointer fixedImage;
mitk::CastToItkImage(m_FixedImage, fixedImage);
typename MovingImageType::Pointer movingImage;
mitk::CastToItkImage(m_MovingImage, movingImage);
typename itk::AffineTransform< double, VImageDimension>::Pointer transformPointer = itk::AffineTransform< double, VImageDimension>::New();
transformPointer->SetIdentity();
if (m_Controls.m_CenterForInitializerAffine->isChecked())
{
typedef typename itk::AffineTransform< double, VImageDimension > AffineTransformType;
typedef typename itk::CenteredTransformInitializer<AffineTransformType, FixedImageType, MovingImageType> TransformInitializerType;
typename TransformInitializerType::Pointer transformInitializer = TransformInitializerType::New();
transformInitializer->SetFixedImage( fixedImage );
transformInitializer->SetMovingImage( movingImage );
transformInitializer->SetTransform( transformPointer );
if (m_Controls.m_MomentsAffine->isChecked())
{
transformInitializer->MomentsOn();
}
else
{
transformInitializer->GeometryOn();
}
transformInitializer->InitializeTransform();
}
m_CenterX = transformPointer->GetCenter()[0];
m_CenterY = transformPointer->GetCenter()[1];
m_CenterZ = transformPointer->GetCenter()[2];
m_TransformObject = transformPointer.GetPointer();
return transformPointer.GetPointer();
}
itk::Object::Pointer QmitkVersorRigid3DTransformView::GetTransform2(itk::Image<TPixelType, VImageDimension>* itkImage1)
{
if (VImageDimension == 3)
{
typedef typename itk::Image< TPixelType, 3 > FixedImage3DType;
typedef typename itk::Image< TPixelType, 3 > MovingImage3DType;
// the fixedImage is the input parameter (fix for Bug #14626)
typename FixedImage3DType::Pointer fixedImage = itkImage1;
// the movingImage type is known, use the ImageToItk filter (fix for Bug #14626)
typename mitk::ImageToItk<MovingImage3DType>::Pointer movingImageToItk = mitk::ImageToItk<MovingImage3DType>::New();
movingImageToItk->SetInput(m_MovingImage);
movingImageToItk->Update();
typename MovingImage3DType::Pointer movingImage = movingImageToItk->GetOutput();
typename itk::VersorRigid3DTransform< double >::Pointer transformPointer = itk::VersorRigid3DTransform< double >::New();
transformPointer->SetIdentity();
typedef typename itk::VersorRigid3DTransform< double > VersorRigid3DTransformType;
if (m_Controls.m_CenterForInitializerVersorRigid3D->isChecked())
{
typedef typename itk::CenteredTransformInitializer<VersorRigid3DTransformType, FixedImage3DType, MovingImage3DType> TransformInitializerType;
typename TransformInitializerType::Pointer transformInitializer = TransformInitializerType::New();
transformInitializer->SetFixedImage( fixedImage );
transformInitializer->SetMovingImage( movingImage );
transformInitializer->SetTransform( transformPointer );
if (m_Controls.m_MomentsVersorRigid3D->isChecked())
{
transformInitializer->MomentsOn();
}
else
{
transformInitializer->GeometryOn();
}
transformInitializer->InitializeTransform();
}
typedef VersorRigid3DTransformType::VersorType VersorType;
typedef VersorType::VectorType VectorType;
VersorType rotation;
VectorType axis;
axis[0] = 0.0;
axis[1] = 0.0;
axis[2] = 1.0;
const double angle = 0;
rotation.Set( axis, angle );
transformPointer->SetRotation( rotation );
m_CenterX = transformPointer->GetCenter()[0];
m_CenterY = transformPointer->GetCenter()[1];
m_CenterZ = transformPointer->GetCenter()[2];
m_TransformObject = transformPointer.GetPointer();
return transformPointer.GetPointer();
}
return NULL;
}
itk::Object::Pointer QmitkVersorRigid3DTransformView::GetTransform2(itk::Image<TPixelType, VImageDimension>* /*itkImage1*/)
{
if (VImageDimension == 3)
{
typedef typename itk::Image< TPixelType, 3 > FixedImage3DType;
typedef typename itk::Image< TPixelType, 3 > MovingImage3DType;
typename FixedImage3DType::Pointer fixedImage3D;
mitk::CastToItkImage(m_FixedImage, fixedImage3D);
typename MovingImage3DType::Pointer movingImage3D;
mitk::CastToItkImage(m_MovingImage, movingImage3D);
typename itk::VersorRigid3DTransform< double >::Pointer transformPointer = itk::VersorRigid3DTransform< double >::New();
transformPointer->SetIdentity();
typedef typename itk::VersorRigid3DTransform< double > VersorRigid3DTransformType;
if (m_Controls.m_CenterForInitializerVersorRigid3D->isChecked())
{
typedef typename itk::CenteredTransformInitializer<VersorRigid3DTransformType, FixedImage3DType, MovingImage3DType> TransformInitializerType;
typename TransformInitializerType::Pointer transformInitializer = TransformInitializerType::New();
transformInitializer->SetFixedImage( fixedImage3D );
transformInitializer->SetMovingImage( movingImage3D );
transformInitializer->SetTransform( transformPointer );
if (m_Controls.m_MomentsVersorRigid3D->isChecked())
{
transformInitializer->MomentsOn();
}
else
{
transformInitializer->GeometryOn();
}
transformInitializer->InitializeTransform();
}
typedef VersorRigid3DTransformType::VersorType VersorType;
typedef VersorType::VectorType VectorType;
VersorType rotation;
VectorType axis;
axis[0] = 0.0;
axis[1] = 0.0;
axis[2] = 1.0;
const double angle = 0;
rotation.Set( axis, angle );
transformPointer->SetRotation( rotation );
m_CenterX = transformPointer->GetCenter()[0];
m_CenterY = transformPointer->GetCenter()[1];
m_CenterZ = transformPointer->GetCenter()[2];
m_TransformObject = transformPointer.GetPointer();
return transformPointer.GetPointer();
}
return NULL;
}
itk::Object::Pointer QmitkCenteredRigid2DTransformView::GetTransform2(
itk::Image<TPixelType, VImageDimension> *itkImage1)
{
if (VImageDimension == 2)
{
typedef typename itk::Image<TPixelType, 2> FixedImage2DType;
typedef typename itk::Image<TPixelType, 2> MovingImage2DType;
// the fixedImage is the input parameter (fix for Bug #14626)
typename FixedImage2DType::Pointer fixedImage2D = itkImage1;
// the movingImage type is known, use the ImageToItk filter (fix for Bug #14626)
typename mitk::ImageToItk<MovingImage2DType>::Pointer movingImageToItk = mitk::ImageToItk<MovingImage2DType>::New();
movingImageToItk->SetInput(m_MovingImage);
movingImageToItk->Update();
typename MovingImage2DType::Pointer movingImage2D = movingImageToItk->GetOutput();
typename itk::CenteredRigid2DTransform<double>::Pointer transformPointer =
itk::CenteredRigid2DTransform<double>::New();
transformPointer->SetIdentity();
if (m_Controls.m_CenterForInitializerCenteredRigid2D->isChecked())
{
typedef typename itk::CenteredRigid2DTransform<double> CenteredRigid2DTransformType;
typedef
typename itk::CenteredTransformInitializer<CenteredRigid2DTransformType, FixedImage2DType, MovingImage2DType>
TransformInitializerType;
typename TransformInitializerType::Pointer transformInitializer = TransformInitializerType::New();
transformInitializer->SetFixedImage(fixedImage2D);
transformInitializer->SetMovingImage(movingImage2D);
transformInitializer->SetTransform(transformPointer);
if (m_Controls.m_MomentsCenteredRigid2D->isChecked())
{
transformInitializer->MomentsOn();
}
else
{
transformInitializer->GeometryOn();
}
transformInitializer->InitializeTransform();
}
transformPointer->SetAngle(m_Controls.m_AngleCenteredRigid2D->text().toFloat());
m_CenterX = transformPointer->GetCenter()[0];
m_CenterY = transformPointer->GetCenter()[1];
m_TransformObject = transformPointer.GetPointer();
return transformPointer.GetPointer();
}
return nullptr;
}
itk::Object::Pointer QmitkAffineTransformView::GetTransform2(itk::Image<TPixelType, VImageDimension>* itkImage1)
{
typedef typename itk::Image< TPixelType, VImageDimension > FixedImageType;
typedef typename itk::Image< TPixelType, VImageDimension > MovingImageType;
// the fixedImage is the input parameter (fix for Bug #14626)
typename FixedImageType::Pointer fixedImage = itkImage1;
// the movingImage type is known, use the ImageToItk filter (fix for Bug #14626)
typename mitk::ImageToItk<MovingImageType>::Pointer movingImageToItk = mitk::ImageToItk<MovingImageType>::New();
movingImageToItk->SetInput(m_MovingImage);
movingImageToItk->Update();
typename MovingImageType::Pointer movingImage = movingImageToItk->GetOutput();
typename itk::AffineTransform< double, VImageDimension>::Pointer transformPointer = itk::AffineTransform< double, VImageDimension>::New();
transformPointer->SetIdentity();
if (m_Controls.m_CenterForInitializerAffine->isChecked())
{
typedef typename itk::AffineTransform< double, VImageDimension > AffineTransformType;
typedef typename itk::CenteredTransformInitializer<AffineTransformType, FixedImageType, MovingImageType> TransformInitializerType;
typename TransformInitializerType::Pointer transformInitializer = TransformInitializerType::New();
transformInitializer->SetFixedImage( fixedImage );
transformInitializer->SetMovingImage( movingImage );
transformInitializer->SetTransform( transformPointer );
if (m_Controls.m_MomentsAffine->isChecked())
{
transformInitializer->MomentsOn();
}
else
{
transformInitializer->GeometryOn();
}
transformInitializer->InitializeTransform();
}
m_CenterX = transformPointer->GetCenter()[0];
m_CenterY = transformPointer->GetCenter()[1];
m_CenterZ = transformPointer->GetCenter()[2];
m_TransformObject = transformPointer.GetPointer();
return transformPointer.GetPointer();
}
itk::Object::Pointer QmitkCenteredSimilarity2DTransformView::GetTransform2(itk::Image<TPixelType, VImageDimension>* /* itkImage1 */)
{
if (VImageDimension == 2)
{
typedef typename itk::Image< TPixelType, 2 > FixedImage2DType;
typedef typename itk::Image< TPixelType, 2 > MovingImage2DType;
typename FixedImage2DType::Pointer fixedImage2D;
mitk::CastToItkImage(m_FixedImage, fixedImage2D);
typename MovingImage2DType::Pointer movingImage2D;
mitk::CastToItkImage(m_MovingImage, movingImage2D);
typename itk::CenteredSimilarity2DTransform< double >::Pointer transformPointer = itk::CenteredSimilarity2DTransform< double >::New();
transformPointer->SetIdentity();
if (m_Controls.m_CenterForInitializerCenteredSimilarity2D->isChecked())
{
typedef typename itk::CenteredSimilarity2DTransform< double > CenteredSimilarity2DTransformType;
typedef typename itk::CenteredTransformInitializer<CenteredSimilarity2DTransformType, FixedImage2DType, MovingImage2DType> TransformInitializerType;
typename TransformInitializerType::Pointer transformInitializer = TransformInitializerType::New();
transformInitializer->SetFixedImage( fixedImage2D );
transformInitializer->SetMovingImage( movingImage2D );
transformInitializer->SetTransform( transformPointer );
if (m_Controls.m_MomentsCenteredSimilarity2D->isChecked())
{
transformInitializer->MomentsOn();
}
else
{
transformInitializer->GeometryOn();
}
transformInitializer->InitializeTransform();
}
transformPointer->SetScale( m_Controls.m_InitialScaleCenteredSimilarity2D->text().toFloat() );
transformPointer->SetAngle( m_Controls.m_AngleCenteredSimilarity2D->text().toFloat() );
m_CenterX = transformPointer->GetCenter()[0];
m_CenterY = transformPointer->GetCenter()[1];
m_TransformObject = transformPointer.GetPointer();
return transformPointer.GetPointer();
}
return NULL;
}
itk::Object::Pointer QmitkScaleSkewVersor3DTransformView::GetTransform2(itk::Image<TPixelType, VImageDimension>* /*itkImage1*/)
{
if (VImageDimension == 3)
{
typedef typename itk::Image< TPixelType, 3 > FixedImage3DType;
typedef typename itk::Image< TPixelType, 3 > MovingImage3DType;
typename FixedImage3DType::Pointer fixedImage3D;
mitk::CastToItkImage(m_FixedImage, fixedImage3D);
typename MovingImage3DType::Pointer movingImage3D;
mitk::CastToItkImage(m_MovingImage, movingImage3D);
typename itk::ScaleSkewVersor3DTransform< double >::Pointer transformPointer = itk::ScaleSkewVersor3DTransform< double >::New();
transformPointer->SetIdentity();
if (m_Controls.m_CenterForInitializerScaleSkewVersorRigid3D->isChecked())
{
typedef typename itk::ScaleSkewVersor3DTransform< double > ScaleSkewVersor3DTransformType;
typedef typename itk::CenteredTransformInitializer<ScaleSkewVersor3DTransformType, FixedImage3DType, MovingImage3DType> TransformInitializerType;
typename TransformInitializerType::Pointer transformInitializer = TransformInitializerType::New();
transformInitializer->SetFixedImage( fixedImage3D );
transformInitializer->SetMovingImage( movingImage3D );
transformInitializer->SetTransform( transformPointer );
if (m_Controls.m_MomentsScaleSkewVersorRigid3D->isChecked())
{
transformInitializer->MomentsOn();
}
else
{
transformInitializer->GeometryOn();
}
transformInitializer->InitializeTransform();
}
m_CenterX = transformPointer->GetCenter()[0];
m_CenterY = transformPointer->GetCenter()[1];
m_CenterZ = transformPointer->GetCenter()[2];
m_TransformObject = transformPointer.GetPointer();
return transformPointer.GetPointer();
}
return NULL;
}
