CDataArray::name_index_type CDataArray::displayNamesToCN(const std::vector< std::string > & DisplayNames) const
{
assert(DisplayNames.size() == dimensionality()
|| dimensionality() == 0);
name_index_type CNIndex(dimensionality());
name_index_type::iterator to = CNIndex.begin();
std::vector< std::string >::const_iterator it = DisplayNames.begin();
std::vector< std::string >::const_iterator end = DisplayNames.end();
std::vector< std::vector<CRegisteredCommonName> >::const_iterator itCNs = mAnnotationsCN.begin();
size_t dimension = 0;
for (; it != end && dimension < dimensionality(); ++it, ++itCNs, ++dimension, ++to)
{
std::vector<CRegisteredCommonName>::const_iterator itCN = itCNs->begin();
std::vector<CRegisteredCommonName>::const_iterator endCN = itCNs->end();
for (; itCN != endCN; ++itCN)
{
if (CCommonName::unescape(*it) == createDisplayName(*itCN))
{
*to = *itCN;
break;
}
}
if (itCN == endCN)
{
size_t index = C_INVALID_INDEX;
bool ValidIndex = strToIndex(*it, index);
if (ValidIndex)
{
if (itCNs->empty())
{
*to = *it;
}
else
{
*to = itCNs->operator [](index);
}
}
else
{
*to = std::string("not found");
}
}
}
return CNIndex;
}
const CCopasiObject * CArrayAnnotation::addElementReference(C_INT32 u) const
{
CArrayAnnotation::name_index_type CNIndex(1);
if ((C_INT32)mAnnotationsCN[0].size() <= u &&
(C_INT32)mpArray->size()[0] >= u)
{
const_cast< CArrayAnnotation * >(this)->autoAnnotation(0);
}
CNIndex[0] = mAnnotationsCN[0][u];
return addElementReference(CNIndex);
}
const CCopasiObject * CArrayAnnotation::addElementReference(const CArrayAnnotation::index_type & index) const
{
CArrayAnnotation::name_index_type CNIndex(index.size());
CArrayAnnotation::index_type::const_iterator it = index.begin();
CArrayAnnotation::index_type::const_iterator end = index.end();
std::vector< std::vector<CRegisteredObjectName> >::const_iterator itCN = mAnnotationsCN.begin();
CArrayAnnotation::name_index_type::iterator to = CNIndex.begin();
for (; it != end; ++it, ++itCN, ++to)
{
*to = itCN->operator [](*it);
}
return addElementReference(CNIndex);
}
CArrayAnnotation::name_index_type CArrayAnnotation::displayNamesToCN(const std::vector< std::string > & DisplayNames) const
{
assert(DisplayNames.size() == dimensionality()
|| dimensionality() == 0);
name_index_type CNIndex(dimensionality());
name_index_type::iterator to = CNIndex.begin();
std::vector< std::string >::const_iterator it = DisplayNames.begin();
std::vector< std::string >::const_iterator end = DisplayNames.end();
std::vector< std::vector<CRegisteredObjectName> >::const_iterator itCNs = mAnnotationsCN.begin();
size_t index = 0;
for (; it != end && index < dimensionality(); ++it, ++itCNs, ++index, ++to)
{
std::vector<CRegisteredObjectName>::const_iterator itCN = itCNs->begin();
std::vector<CRegisteredObjectName>::const_iterator endCN = itCNs->end();
for (; itCN != endCN; ++itCN)
{
if (*it == this->createDisplayName(*itCN))
{
*to = *itCN;
break;
}
}
if (itCN == endCN)
{
const char * pTail = NULL;
C_INT32 index = strToInt(it->c_str(), &pTail);
if (itCNs->empty() || pTail != it->c_str() + it->size())
{
*to = std::string("not found");
}
else
{
*to = itCNs->operator [](index);
}
}
}
return CNIndex;
}
const CDataObject * CDataArray::addElementReference(const CDataArray::index_type & index) const
{
CDataArray::name_index_type CNIndex(index.size());
CDataArray::name_index_type::iterator to = CNIndex.begin();
CDataArray::index_type::const_iterator it = index.begin();
CDataArray::index_type::const_iterator end = index.end();
std::vector< std::vector<CRegisteredCommonName> >::const_iterator itCN = mAnnotationsCN.begin();
for (; it != end; ++it, ++to, ++itCN)
{
*to = *it < itCN->size() ? itCN->operator [](*it) : CRegisteredCommonName("");
if (to->empty())
{
*to = StringPrint("%d", *it);
}
}
return addElementReference(CNIndex);
}
