END_TEST
START_TEST (test_Compartment_getsetConstant)
{
// by default
fail_unless( Compartment_getConstant(C) == 1);
fail_unless( Compartment_isSetConstant(C) == 1);
Compartment_setConstant(C, 1);
fail_unless( Compartment_getConstant(C) == 1);
fail_unless( Compartment_isSetConstant(C) == 1);
int ret = Compartment_unsetConstant(C);
/* in L2 returns unexpected but is still set by default */
fail_unless(ret == LIBSBML_UNEXPECTED_ATTRIBUTE);
fail_unless( Compartment_getConstant(C) == 1);
fail_unless( Compartment_isSetConstant(C) == 1);
Compartment_setConstant(C, 0);
fail_unless( Compartment_getConstant(C) == 0);
fail_unless( Compartment_isSetConstant(C) == 1);
ret = Compartment_unsetConstant(C);
fail_unless(ret == LIBSBML_UNEXPECTED_ATTRIBUTE);
fail_unless( Compartment_getConstant(C) == 1);
fail_unless( Compartment_isSetConstant(C) == 1);
}
END_TEST
START_TEST (test_L3_Compartment_constant)
{
fail_unless(Compartment_isSetConstant(C) == 0);
Compartment_setConstant(C, 1);
fail_unless(Compartment_getConstant(C) == 1);
fail_unless(Compartment_isSetConstant(C) == 1);
int ret = Compartment_unsetConstant(C);
fail_unless(ret == LIBSBML_OPERATION_SUCCESS);
fail_unless(Compartment_getConstant(C) == 1);
fail_unless(Compartment_isSetConstant(C) == 0);
Compartment_setConstant(C, 0);
fail_unless(Compartment_getConstant(C) == 0);
fail_unless(Compartment_isSetConstant(C) == 1);
ret = Compartment_unsetConstant(C);
fail_unless(ret == LIBSBML_OPERATION_SUCCESS);
fail_unless(Compartment_getConstant(C) == 0);
fail_unless(Compartment_isSetConstant(C) == 0);
}
END_TEST
START_TEST (test_Compartment_initDefaults)
{
Compartment_t *c = Compartment_create(2, 4);
Compartment_setId(c, "A");
Compartment_initDefaults(c);
fail_unless( !strcmp(Compartment_getId (c), "A"));
fail_unless( Compartment_getName (c) == NULL );
fail_unless( Compartment_getUnits (c) == NULL );
fail_unless( Compartment_getOutside(c) == NULL );
fail_unless( Compartment_getSpatialDimensions(c) == 3 );
fail_unless( Compartment_getVolume (c) == 1.0 );
fail_unless( Compartment_getConstant (c) == 1 );
fail_unless( Compartment_isSetId (c) );
fail_unless( !Compartment_isSetName (c) );
fail_unless( !Compartment_isSetSize (c) );
fail_unless( !Compartment_isSetVolume (c) );
fail_unless( !Compartment_isSetUnits (c) );
fail_unless( !Compartment_isSetOutside(c) );
fail_unless( Compartment_isSetSpatialDimensions(c) );
fail_unless( Compartment_isSetConstant(c) );
Compartment_free(c);
}
END_TEST
START_TEST (test_Compartment_createWithNS )
{
XMLNamespaces_t *xmlns = XMLNamespaces_create();
XMLNamespaces_add(xmlns, "http://www.sbml.org", "testsbml");
SBMLNamespaces_t *sbmlns = SBMLNamespaces_create(2,1);
SBMLNamespaces_addNamespaces(sbmlns,xmlns);
Compartment_t *c =
Compartment_createWithNS (sbmlns);
fail_unless( SBase_getTypeCode ((SBase_t *) c) == SBML_COMPARTMENT );
fail_unless( SBase_getMetaId ((SBase_t *) c) == NULL );
fail_unless( SBase_getNotes ((SBase_t *) c) == NULL );
fail_unless( SBase_getAnnotation((SBase_t *) c) == NULL );
fail_unless( SBase_getLevel ((SBase_t *) c) == 2 );
fail_unless( SBase_getVersion ((SBase_t *) c) == 1 );
fail_unless( Compartment_getNamespaces (c) != NULL );
fail_unless( XMLNamespaces_getLength(Compartment_getNamespaces(c)) == 2 );
fail_unless( Compartment_getName(c) == NULL );
fail_unless( Compartment_getSpatialDimensions(c) == 3 );
fail_unless( Compartment_getConstant(c) == 1 );
Compartment_free(c);
XMLNamespaces_free(xmlns);
SBMLNamespaces_free(sbmlns);
}
END_TEST
START_TEST (test_Compartment_createWith)
{
Compartment_t *c = Compartment_create(2, 4);
Compartment_setId(c, "A");
fail_unless( SBase_getTypeCode ((SBase_t *) c) == SBML_COMPARTMENT );
fail_unless( SBase_getMetaId ((SBase_t *) c) == NULL );
fail_unless( SBase_getNotes ((SBase_t *) c) == NULL );
fail_unless( SBase_getAnnotation((SBase_t *) c) == NULL );
fail_unless( Compartment_getName(c) == NULL );
fail_unless( Compartment_getSpatialDimensions(c) == 3 );
fail_unless( !strcmp( Compartment_getId (c), "A" ) );
fail_unless( Compartment_getConstant(c) == 1 );
fail_unless( Compartment_isSetId (c) );
fail_unless( !Compartment_isSetName (c) );
Compartment_free(c);
}
END_TEST
START_TEST (test_L3_Compartment_constant)
{
fail_unless(Compartment_isSetConstant(C) == 0);
Compartment_setConstant(C, 1);
fail_unless(Compartment_getConstant(C) == 1);
fail_unless(Compartment_isSetConstant(C) == 1);
Compartment_setConstant(C, 0);
fail_unless(Compartment_getConstant(C) == 0);
fail_unless(Compartment_isSetConstant(C) == 1);
}
void printSpecies(Model_t *m, FILE *f)
{
int i, j;
Species_t *s;
Compartment_t *c;
fprintf(f, "\n");
fprintf(f, "# Initial Conditions for Species and Compartments:\n");
for ( i=0; i<Model_getNumCompartments(m); i++ ) {
if ( i== 0 ) fprintf(f, "# Compartments:\n");
c = Model_getCompartment(m,i);
if(Compartment_isSetId(c))
fprintf(f, "%s ", Compartment_getId(c));
if(Compartment_isSetName(c))
fprintf(f, "(%s) ", Compartment_getName(c));
if ( Compartment_isSetVolume(c) )
fprintf(f, "= %g; ", Compartment_getSize(c));
fprintf(f, "%s", Compartment_getConstant(c) ? "" : "variable; ");
if(Compartment_isSetOutside(c))
fprintf(f, "outside %s; ", Compartment_getOutside(c));
/* fprintf(f, "\n"); */
fprintf(f, "dimensions %d; ", Compartment_getSpatialDimensions(c));
if(Compartment_isSetUnits(c))
fprintf(f, "[%s]; ", Compartment_getUnits(c));
fprintf(f, "\n");
fprintf(f, "# Species concentrations in `compartment' %s\n",
Compartment_getId(c));
for(j=0;j<Model_getNumSpecies(m);j++){
s = Model_getSpecies(m,j);
if(strcmp(Species_getCompartment(s), Compartment_getId(c))==0){
fprintf(f, "%s ", Species_getId(s));
if(Species_isSetName(s))
fprintf(f, "(%s) ", Species_getName(s));
if ( Species_isSetInitialAmount(s) )
fprintf(f, "= %g/%g; ",
Species_getInitialAmount(s),
Compartment_getSize(c));
else if ( Species_isSetInitialConcentration(s) )
fprintf(f, "= %g; ", Species_getInitialConcentration(s));
else
fprintf(f, "# no initial value;");
fprintf(f, "%s", Species_getBoundaryCondition(s) ? "boundary;" : "");
fprintf(f, "%s", Species_getConstant(s) ? "constant;" : "");
if(Species_isSetCharge(s))
fprintf(f, "charge = %d; ", Species_getCharge(s));
fprintf(f, "\n");
}
}
fprintf(f, "\n");
}
}
END_TEST
START_TEST (test_Compartment_setConstant1)
{
int i = Compartment_setConstant(C, 0);
fail_unless( i == LIBSBML_UNEXPECTED_ATTRIBUTE );
fail_unless( Compartment_getConstant(C) == 0 );
}
END_TEST
START_TEST (test_Compartment_getsetConstant)
{
Compartment_setConstant(C, 1);
fail_unless( Compartment_getConstant(C) == 1);
}
END_TEST
START_TEST (test_Compartment_setConstant2)
{
Compartment_t *c =
Compartment_create(2, 2);
int i = Compartment_setConstant(c, 0);
fail_unless( i == LIBSBML_OPERATION_SUCCESS );
fail_unless( Compartment_getConstant(c) == 0 );
Compartment_free(c);
}