bool ICmdProcTextEntryStc::DoReplaceAll(ICmdParam& cmd)
{
cmd.param2=1;
Target.SetInsertionPoint(0);
if(!TestSelection() && !DoFind(cmd))
{
Wrapper::MsgsDialog(_hT("no results"),0);
return false;
}
int n=0;
Target.BeginUndoAction();
try
{
while(DoReplace(cmd)) n++;
}
catch(std::exception&)
{
}
Target.EndUndoAction();
Wrapper::MsgsDialog(String::Format(_hT("%d results replaced"),n),0);
return true;
}
bool ICmdProcTextEntryStc::DoExecId(ICmdParam& cmd)
{
switch(cmd.param1)
{
case CP_DIRTY:
Target.MarkDirty();
break;
case CP_SAVE_TEMP:
return true;
case CP_SAVE_FILE:
return false;
case CP_FIND:
if(data.text_old=="") return false;
Target.SetSearchFlags(data.flags.val());
return DoFind(cmd);
case CP_REPLACE:
if(data.text_old=="") return false;
Target.SetSearchFlags(data.flags.val());
return DoReplace(cmd);
case CP_REPLACEALL:
if(data.text_old=="") return false;
Target.SetSearchFlags(data.flags.val());
return DoReplaceAll(cmd);
default:
return basetype::DoExecId(cmd);
}
return true;
}
static bool
CVE_2013_0750_firefox8_0_1_ReplaceRegExpCallback(JSContext *cx, RegExpStatics *res, size_t count, void *p)
{
ReplaceData &rdata = *static_cast<ReplaceData *>(p);
rdata.calledBack = true;
JSLinearString &str = rdata.str->asLinear(); /* flattened for regexp */
size_t leftoff = rdata.leftIndex;
const jschar *left = str.chars() + leftoff;
size_t leftlen = res->matchStart() - leftoff;
rdata.leftIndex = res->matchLimit();
size_t replen = 0; /* silence 'unused' warning */
if (!FindReplaceLength(cx, res, rdata, &replen))
return false;
size_t growth = leftlen + replen;
if (!rdata.sb.reserve(rdata.sb.length() + growth))
return false;
rdata.sb.infallibleAppend(left, leftlen); /* skipped-over portion of the search value */
DoReplace(cx, res, rdata);
return true;
}
int
main (int argc, char **argv)
{
FILE *f;
ReplaceSet *s;
if (!argv[1])
Bail ("usage: %s <template.sgml>", argv[0]);
f = fopen (argv[1], "r");
if (!f)
{
Bail ("can't open file %s", argv[1]);
exit (1);
}
while ((s = ReplaceSetRead (stdin)))
{
DoReplace (f, s);
ReplaceSetDispose (s);
rewind (f);
}
if (ferror (stdout))
Bail ("%s", "error writing output");
exit (0);
}
void SavvyEditor::AppFrame::OnFindDialog(wxFindDialogEvent& a_Event)
{
wxEventType type = a_Event.GetEventType();
if (type == wxEVT_FIND || type == wxEVT_FIND_NEXT)
{
if (!DoFind(a_Event.GetFindString(), a_Event.GetFlags()))
{
wxMessageBox(wxT("No more matches."), DEFAULT_FRAME_TITLE);
}
}
else if (type == wxEVT_FIND_REPLACE)
{
if (!DoReplace(a_Event.GetFindString(), a_Event.GetReplaceString(), a_Event.GetFlags()))
{
wxMessageBox(wxT("Nothing to replace."), DEFAULT_FRAME_TITLE);
}
}
else if (type == wxEVT_FIND_REPLACE_ALL)
{
int numReplaced = DoReplaceAll(a_Event.GetFindString(), a_Event.GetReplaceString(), a_Event.GetFlags());
if (numReplaced > 0)
{
wxString numString = wxString::Format(wxT("%i"), numReplaced);
numString.Append(" occurrences replaced.");
wxMessageBox(numString, DEFAULT_FRAME_TITLE);
}
else
{
wxMessageBox(wxT("Nothing to replace."), DEFAULT_FRAME_TITLE);
}
}
else if (type == wxEVT_FIND_CLOSE)
{
wxFindReplaceDialog *dlg = a_Event.GetDialog();
int idMenu;
const wxChar *txt;
if (dlg == m_FindDialog)
{
txt = wxT("Find");
idMenu = ID_FindDialog;
m_FindDialog = NULL;
}
else if (dlg == m_ReplaceDialog)
{
txt = wxT("Replace");
idMenu = ID_ReplaceDialog;
m_ReplaceDialog = NULL;
}
else
{
txt = wxT("Unknown");
idMenu = wxID_ANY;
wxFAIL_MSG(wxT("unexpected event"));
}
if (idMenu != wxID_ANY)
{
GetMenuBar()->Check(idMenu, false);
}
dlg->Destroy();
}
else
{
wxLogError(wxT("Unknown find dialog event!"));
}
}
static void ProcFile( char * fname )
/**********************************/
{
int ftype;
char * name;
int status;
int namelen;
char * bak;
namelen = strlen( fname ) + 5;
name = alloca( namelen );
if( name == NULL ) Suicide(); // null == no stack space left.
strcpy( name, fname );
ReplaceExt( name, ".obj", FALSE );
InFile = QOpen( name, O_RDONLY | O_BINARY, 0 );
for(;;) {
CleanRecStuff();
ftype = ReadRec();
if( ftype == ENDLIBRARY || ftype == ENDFILE ) {
break;
} else if( ftype == LIBRARY ) {
Warning( "exclude option does not apply to libraries" );
FreeList( ExcludeList );
ExcludeList = NULL;
} else if( ftype != OBJECT ) {
Error( "file is not a standard OBJECT or LIBRARY file" );
}
OutFile = QOpen( TEMP_OBJ_NAME, O_WRONLY|O_CREAT|O_TRUNC|O_BINARY, 0 );
do {
ProcessRec();
status = ReadRec();
} while( status == OK );
if( status == ENDMODULE ) {
ProcessRec(); // process the modend rec.
DoReplace();
} else {
Error( "premature end of file encountered" );
}
FreeList( ExcludeList ); // do this here so concatenated .obj files
ExcludeList = NULL; // only have the first module excluded.
}
CloseFiles();
if( MakeBackup ) {
bak = alloca( namelen );
if( bak == NULL ) Suicide(); // null == no stack space left.
strcpy( bak, name );
if( ftype == ENDLIBRARY ) {
ReplaceExt( bak, ".bak", TRUE );
} else {
ReplaceExt( bak, ".bob", TRUE );
}
CopyFile( name, bak );
}
QRemove( name );
if( ftype == ENDLIBRARY ) {
rename( TEMP_LIB_NAME, name );
} else {
rename( TEMP_OBJ_NAME, name );
}
FileCleanup();
}
/*>BOOL blRepOneSChain(PDB *pdb, char *ResSpec, char aa, char *ChiTable,
char *RefCoords)
---------------------------------------------------------------------
*//**
\param[in,out] *pdb PDB linked list to modify
\param[in] *ResSpec Residue spec for residue to replace in the
format [c]nnn[i]
\param[in] aa The 1-letter code for the new sidechain
\param[in] *ChiTable The equivalent Chi table
\param[in] *RefCoords The reference coordinates file
\return Success?
Replace a single sidechain. Takes a PDB linked list, a residues
specfication (in the form [c]nnn[i] where [c] is an optional chain
name, nnn is a residue number and [i] is an optional insert code)
and a 1-letter code of the required sidechain and does a simple
maximum overlap replacement of the sidechain. Also requires filenames
of the two datafiles.
- 12.08.96 Original based on RepSChain()
- 15.08.96 Removed unused variables
- 07.07.14 Use bl prefix for functions By: CTP
- 23.02.15 Modified for new blRenumAtomsPDB() which takes an offset
*/
BOOL blRepOneSChain(PDB *pdb, char *ResSpec, char aa, char *ChiTable,
char *RefCoords)
{
PDB *ResStart, /* Start of residue */
*NextRes; /* Start of next residue */
BOOL noenv = FALSE; /* Flag for no env. var. found */
if(sFirstCall)
{
FILE *fp_ChiTable;
/* Allocate 2D array for equivalent torsions */
if((sChiTab = (int **)blArray2D(sizeof(int), NUMAAKNOWN, NUMAAKNOWN))
== NULL)
return(FALSE);
/* Open files */
if((fp_ChiTable = blOpenFile(ChiTable,"DATADIR","r",&noenv)) == NULL)
{
if(noenv)
{
sprintf(gRSCError,"DATADIR environment variable not set\n");
}
else
{
sprintf(gRSCError,"Unable to open chi link table: %s\n",
ChiTable);
}
return(FALSE);
}
if((sFp_RefCoords = blOpenFile(RefCoords,"DATADIR","r",&noenv)) ==
NULL)
{
if(noenv)
{
sprintf(gRSCError,"DATADIR environment variable not set\n");
}
else
{
sprintf(gRSCError,"Unable to open reference coordinates: \
%s\n", RefCoords);
}
return(FALSE);
}
/* Read the equivalent chi table and the atom table */
ReadChiTable(fp_ChiTable, sChiTab);
/* Close the table files */
fclose(fp_ChiTable);
sFirstCall = FALSE;
}
/* Find the specified residue and the one following */
if((ResStart = blFindResidueSpec(pdb, ResSpec))==NULL)
{
sprintf(gRSCError,"Residue specification not in PDB list\n");
return(FALSE);
}
NextRes = blFindNextResidue(ResStart);
/* If there is a sequence mismatch, replace the residue */
if(aa != blThrone(ResStart->resnam))
{
if(DoReplace(ResStart, NextRes, aa, sChiTab, sFp_RefCoords) ==
NULL)
{
return(FALSE);
}
}
blRenumAtomsPDB(pdb, 1);
return(TRUE);
}
/*>BOOL blRepSChain(PDB *pdb, char *sequence, char *ChiTable,
char *RefCoords)
----------------------------------------------------------
*//**
\param[in,out] *pdb PDB linked list to modify
\param[in] *sequence The 1-letter code required for the structure
\param[in] *ChiTable The equivalent Chi table
\param[in] *RefCoords The reference coordinates file
\return Success?
Replace sidechains. Takes a PDB linked list and a 1-letter code
sequence and replaces the sidechains. Also requires filenames of the
two datafiles. DEL residues in the pdb linked list will be skipped
as will -'s in the sequence
- 12.05.92 Original
- 14.05.92 Corrected handling of matching DEL and -
- 21.06.93 Changed to allocate chitab using Array2D
- 14.03.94 Changed logic of return value. Now places error messages in
gRSCError.
- 09.11.94 Uses OpenFile() to look in $(DATADIR) is the file wasn't
found as specified.
- 12.08.96 Made static variables external to this routine as they are
shared by RepOneSChain(). sChiTab was being allocated on every
call instead of just the first one.
- 07.07.14 Use bl prefix for functions By: CTP
- 23.02.15 Modified for new blRenumAtomsPDB() which takes an offset
*/
BOOL blRepSChain(PDB *pdb, /* PDB linked list */
char *sequence, /* Sequence 1-letter code */
char *ChiTable, /* Equivalent torsion table filename*/
char *RefCoords) /* Reference coordinate filename */
{
int resnum; /* Current residue number */
char insert[8], /* Current insert code */
*seq; /* Pointer to aa in sequence */
PDB *p, /* General PDB pointer */
*ResStart, /* Start of residue */
*NextRes; /* Start of next residue */
BOOL noenv = FALSE; /* Flag for no env. var. found */
if(sFirstCall)
{
FILE *fp_ChiTable;
/* Allocate 2D array for equivalent torsions */
if((sChiTab = (int **)blArray2D(sizeof(int), NUMAAKNOWN, NUMAAKNOWN))
== NULL)
return(FALSE);
/* Open files */
if((fp_ChiTable = blOpenFile(ChiTable,"DATADIR","r",&noenv)) == NULL)
{
if(noenv)
{
sprintf(gRSCError,"DATADIR environment variable not set\n");
}
else
{
sprintf(gRSCError,"Unable to open chi link table: %s\n",
ChiTable);
}
return(FALSE);
}
if((sFp_RefCoords = blOpenFile(RefCoords,"DATADIR","r",&noenv)) ==
NULL)
{
if(noenv)
{
sprintf(gRSCError,"DATADIR environment variable not set\n");
}
else
{
sprintf(gRSCError,"Unable to open reference coordinates: \
%s\n", RefCoords);
}
return(FALSE);
}
/* Read the equivalent chi table and the atom table */
ReadChiTable(fp_ChiTable, sChiTab);
/* Close the table files */
fclose(fp_ChiTable);
sFirstCall = FALSE;
}
/* Step along the PDB linked list isolating a residue at a time and
replacing it if necessary. The loop also steps along the sequence
and will end if the sequence string ends.
*/
for(p=pdb, seq = sequence; p && *seq != '\0'; NEXT(p))
{
ResStart = p; /* Start of residue */
resnum = p->resnum;
strcpy(insert,p->insert);
/* Move to end of residue and store pointer to next residue */
while(p->next && p->next->resnum == resnum
&& !strcmp(p->next->insert, insert))
NEXT(p);
NextRes = p->next;
/* If its a DEL, step over any - in required sequence */
if(!strncmp(ResStart->resnam,"DEL",3))
{
while(*seq == '-') seq++;
}
else /* Not a DEL, see if it needs replacing */
{
/* If there is a sequence mismatch, replace the residue */
if(*seq != blThrone(p->resnam))
p = DoReplace(ResStart,NextRes,*seq,sChiTab,sFp_RefCoords);
if(p == NULL) return(FALSE);
/* Step to the next sequence item which isn't a - */
while(*(++seq) == '-') ;
}
}
blRenumAtomsPDB(pdb, 1);
return(TRUE);
}
LRESULT FindReplDlg::OnReplaceAll(WORD wNotifyCode, WORD wID, HWND hWndCtl, BOOL& bHandled)
{
DoReplace(0);
return 0;
}
void FindReplDlgFltk::OnReplaceSel()
{
DoReplace(1);
}
void FindReplDlgFltk::OnReplaceAll()
{
DoReplace(0);
}
