Esempio n. 1
0
bool CSnpBitfield2::IsTrue( CSnpBitfield::EFunctionClass prop ) const
{
    bool ret = false;

    if (   prop == CSnpBitfield::eMultipleFxn
        || prop == CSnpBitfield::eUnknownFxn ) {

        ret = ( GetFunctionClass() == prop );
    }
    else {

        // looking for a specific function class
        unsigned char byte3 = m_listBytes[3];
        unsigned char byte4 = m_listBytes[4];

        // the 'Has reference' bit may be set.  So turn it off for test.
        byte4 &= 0xfd; // 1111 1101 <- mask to set the 2nd bit to zero

        switch (prop) {
            case  CSnpBitfield::eInGene:    ret = (byte3 & fBit0);  break;
            case  CSnpBitfield::eInGene5:   ret = (byte3 & fBit1);  break;
            case  CSnpBitfield::eInGene3:   ret = (byte3 & fBit2);  break;
            case  CSnpBitfield::eIntron:    ret = (byte3 & fBit3);  break;
            case  CSnpBitfield::eDonor:     ret = (byte3 & fBit4);  break;
            case  CSnpBitfield::eAcceptor:  ret = (byte3 & fBit5);  break;
            case  CSnpBitfield::eInUTR5:    ret = (byte3 & fBit6);  break;
            case  CSnpBitfield::eInUTR3:    ret = (byte3 & fBit7);  break;

            // using byte4
            case  CSnpBitfield::eSynonymous:    ret = (byte4 & fBit0);  break;
            case  CSnpBitfield::eNonsense:      ret = (byte4 & fBit2);  break;
            case  CSnpBitfield::eMissense:      ret = (byte4 & fBit3);  break;
            case  CSnpBitfield::eFrameshift:    ret = (byte4 & fBit4);  break;

            // eUTR
            case CSnpBitfield::eUTR:    ret = (byte3 & fBit6) || (byte3 & fBit7); break;

            default:
                ret = false;
        }
    }

    return ret;
}
Esempio n. 2
0
bool CSnpBitfield1_2::IsTrue( CSnpBitfield::EFunctionClass prop ) const
{
    return (prop == GetFunctionClass());
}