static void _stdcall SaveGame2() {
char buf[MAX_PATH];
GetSavePath(buf, "gv");
dlog_f("Saving game: %s\r\n", DL_MAIN, buf);
DWORD size, unused = 0;
HANDLE h = CreateFileA(buf, GENERIC_WRITE, 0, 0, CREATE_ALWAYS, 0, 0);
if (h != INVALID_HANDLE_VALUE) {
SaveGlobals(h);
WriteFile(h, &unused, 4, &size, 0);
unused++;
WriteFile(h, &unused, 4, &size, 0);
PerksSave(h);
SaveArrays(h);
CloseHandle(h);
} else {
dlogr("ERROR creating sfallgv!", DL_MAIN);
DisplayConsoleMessage(SaveSfallDataFailMsg);
PlaySfx("IISXXXX1");
}
GetSavePath(buf, "fs");
h = CreateFileA(buf, GENERIC_WRITE, 0, 0, CREATE_ALWAYS, 0, 0);
if (h != INVALID_HANDLE_VALUE) {
FileSystemSave(h);
}
CloseHandle(h);
}
bool TextScanner::SaveFile( const string &fName, bool bAddBasePath /*= true*/ )
{
string f;
string lineFeed = "\r\n";
if (bAddBasePath)
{
f = GetSavePath()+fName;
} else
{
f = fName;
}
FILE *fp = fopen( f.c_str(), "wb");
if (!fp)
{
LogError("Unable to save data");
return false;
}
for (uint32 i=0; i < m_lines.size(); i++)
{
fwrite(m_lines[i].c_str(), m_lines[i].size(), 1, fp);
fwrite(lineFeed.c_str(), lineFeed.size(), 1, fp);
}
fclose(fp);
return true;
}
void RemoveFile( std::string fileName, bool bAddSavePath)
{
if (bAddSavePath)
{
fileName = GetSavePath()+fileName;
}
if (unlink(fileName.c_str()) == -1)
{
switch (errno)
{
case EACCES:
LogMsg("Warning: Unable to delete file %s, no access", fileName.c_str());
break;
case EBUSY:
LogError("Warning: Unable to delete file %s, file is being used", fileName.c_str());
break;
case EPERM:
LogMsg("Warning: Unable to delete file %s, may be a dir", fileName.c_str());
break;
case EROFS:
LogMsg("Warning: Unable to delete file %s, File system is read only", fileName.c_str());
break;
default:
//LogMsg("Warning: Unable to delete file %s, unknown error", fileName.c_str());
//file doesn't exist
break;
}
}
}
CString GetPath(const CString & sChannel)
{
CString sBuffer = m_pUser->GetUserName() + sChannel.AsLower();
CString sRet = GetSavePath();
sRet += "/" + CBlowfish::MD5(sBuffer, true);
return(sRet);
}
CString GetPath()
{
CString sBuffer = m_pUser->GetUserName();
CString sRet = GetSavePath();
sRet += "/.znc-away-" + CBlowfish::MD5(sBuffer, true);
return(sRet);
}
virtual void OnModCTCP(const CString& sMessage) {
if (sMessage.Equals("DCC RESUME ", false, 11)) {
CString sFile = sMessage.Token(2);
unsigned short uResumePort = sMessage.Token(3).ToUShort();
unsigned long uResumeSize = sMessage.Token(4).ToULong();
set<CSocket*>::const_iterator it;
for (it = BeginSockets(); it != EndSockets(); ++it) {
CDCCSock* pSock = (CDCCSock*) *it;
if (pSock->GetLocalPort() == uResumePort) {
if (pSock->Seek(uResumeSize)) {
PutModule("DCC -> [" + pSock->GetRemoteNick() + "][" + pSock->GetFileName() + "] - Attempting to resume from file position [" + CString(uResumeSize) + "]");
PutUser(":*[email protected] PRIVMSG " + m_pUser->GetNick() + " :\001DCC ACCEPT " + sFile + " " + CString(uResumePort) + " " + CString(uResumeSize) + "\001");
} else {
PutModule("DCC -> [" + m_pUser->GetNick() + "][" + sFile + "] Unable to find send to initiate resume.");
}
}
}
} else if (sMessage.Equals("DCC SEND ", false, 9)) {
CString sLocalFile = CDir::CheckPathPrefix(GetSavePath(), sMessage.Token(2));
if (sLocalFile.empty()) {
PutModule("Bad DCC file: " + sMessage.Token(2));
}
unsigned long uLongIP = sMessage.Token(3).ToULong();
unsigned short uPort = sMessage.Token(4).ToUShort();
unsigned long uFileSize = sMessage.Token(5).ToULong();
GetFile(m_pUser->GetCurNick(), CUtils::GetIP(uLongIP), uPort, sLocalFile, uFileSize);
}
}
void SetLogFilePath(CString sPath) {
if (sPath.empty()) {
sPath = GetSavePath() + "/znc.log";
}
CFile LogFile(sPath);
CString sLogDir = LogFile.GetDir();
struct stat ModDirInfo;
CFile::GetInfo(GetSavePath(), ModDirInfo);
if (!CFile::Exists(sLogDir)) {
CDir::MakeDir(sLogDir, ModDirInfo.st_mode);
}
m_sLogFile = sPath;
SetNV("path", sPath);
}
/*******************************************************************
* Function Name: PrintStats
* Return Type : int
* Created On : Oct 27, 2013
* Created By : hrushi
* Comments : Prints the Mean, Median, Standard Dev. the EM Score
* Arguments :
*******************************************************************/
int GroundTruth::PrintStats( const Args& args ) const
{
vector<double> AllScoreVal;
string ScoreSavePath = GetSavePath( args );
cout << "Saving to: " << ScoreSavePath << endl;
cv::FileStorage fScore;
fScore.open(ScoreSavePath, cv::FileStorage::WRITE);
AllScoreVal.reserve(m_vScores.size());
for( auto ClassName : RGN_TYPES )
{
vector<double> ClassScoreVal;
for(const auto& val : m_vScores )
{
AllScoreVal.push_back( val.second );
ClassScoreVal.push_back( val.second );
}
PrintAllVals(args, fScore, ClassName, ClassScoreVal);
}
fScore.release();
PrintStats(args, AllScoreVal);
return EXIT_SUCCESS;
}
void CRawLogMod::PutLog(const CString& sLine)
{
std::ofstream ofLog;
std::stringstream ssPath;
time_t curtime;
tm* timeinfo;
time(&curtime);
timeinfo = gmtime(&curtime);
ssPath.fill('0');
ssPath << GetSavePath() << "/"
<< std::setw(4) << (timeinfo->tm_year + 1900)
<< std::setw(2) << (timeinfo->tm_mon + 1)
<< std::setw(2) << (timeinfo->tm_mday)
<< ".log";
ofLog.open(ssPath.str().c_str(), std::ofstream::app);
if (ofLog.good())
{
ofLog.fill('0');
char ts [15];
sprintf(ts, "%i ", (int)time(NULL));
ofLog << ts << sLine << endl;
}
}
QPair<quint64, quint64> AddTorrent::GetAvailableSpaceInDestination ()
{
try
{
#ifdef Q_OS_WIN32
const auto space = boost::filesystem::space (std::string (GetSavePath ().toUtf8 ().constData ()));
#else
const auto space = boost::filesystem::space (GetSavePath ().toStdWString ());
#endif
return qMakePair<quint64, quint64> (space.available, space.capacity);
}
catch (...)
{
return qMakePair<quint64, quint64> (-1, -1);
}
}
virtual bool OnLoad(const CString & sArgs, CString & sMessage) {
CString sTarget = GetNV("target");
if (sTarget.Equals("syslog"))
m_eLogMode = LOG_TO_SYSLOG;
else if (sTarget.Equals("both"))
m_eLogMode = LOG_TO_BOTH;
else if (sTarget.Equals("file"))
m_eLogMode = LOG_TO_FILE;
else
m_eLogMode = LOG_TO_FILE;
m_sLogFile = GetSavePath() + "/znc.log";
Log("Logging started. ZNC PID[" + CString(getpid()) + "] UID/GID[" + CString(getuid()) + ":" + CString(getgid()) + "]");
return true;
}
bool MainWindow::PromptSaveLog()
{
QString saveFilename = GetSavePath();
if(saveFilename != "")
{
if(m_Ctx->IsLogLocal() && !QFileInfo(m_Ctx->LogFilename()).exists())
{
RDDialog::critical(NULL, tr("File not found"),
tr("Logfile %1 couldn't be found, cannot save.").arg(m_Ctx->LogFilename()));
return false;
}
bool success = false;
if(m_Ctx->IsLogLocal())
{
// we copy the (possibly) temp log to the desired path, but the log item remains referring to
// the original path.
// This ensures that if the user deletes the saved path we can still open or re-save it.
success = QFile::copy(m_Ctx->LogFilename(), saveFilename);
}
else
{
// TODO Remote
// m_Core.Renderer.CopyCaptureFromRemote(m_Core.LogFileName, saveFilename, this);
}
if(!success)
{
RDDialog::critical(NULL, tr("File not found"), tr("Couldn't save to %1").arg(saveFilename));
return false;
}
PersistantConfig::AddRecentFile(m_Ctx->Config.RecentLogFiles, saveFilename, 10);
PopulateRecentFiles();
SetTitle(saveFilename);
// we don't prompt to save on closing - if the user deleted the log that we just saved, then
// that is up to them.
m_SavedTempLog = true;
return true;
}
return false;
}
bool VariantDB::Save(const string &fileName, bool bAddBasePath)
{
string f;
if (bAddBasePath)
{
f = GetSavePath()+fileName;
} else
{
f = fileName;
}
FILE *fp = fopen( f.c_str(), "wb");
if (!fp)
{
LogError("Unable to save data");
return false;
}
uint32 version = C_VARIANT_DB_FILE_VERSION;
fwrite(&version, sizeof(uint32), 1, fp);
dataList::iterator itor = m_data.begin();
while (itor != m_data.end())
{
Variant *pV = itor->second;
if (!pV->Save(fp, itor->first))
{
LogError("Unable to save data");
fclose(fp);
return false;
}
itor++;
}
//add out done marker
uint32 doneMarker = Variant::TYPE_UNUSED;
fwrite(&doneMarker, sizeof(uint32), 1, fp);
fclose(fp);
return true;
}
void CLogMod::PutLog(const CString& sLine, const CString& sWindow /*= "Status"*/)
{
CString sPath;
time_t curtime;
tm* timeinfo;
char buffer[1024];
time(&curtime);
// Don't forget the user's timezone offset
setenv("TZ", m_pUser->GetTimezone().c_str(), 1);
timeinfo = localtime(&curtime);
// Generate file name
if (!strftime(buffer, sizeof(buffer), m_sLogPath.c_str(), timeinfo))
{
DEBUG("Could not format log path [" << sPath << "]");
return;
}
sPath = buffer;
// $WINDOW has to be handled last, since it can contain %
sPath.Replace("$NETWORK", (m_pNetwork ? m_pNetwork->GetName() : "znc"));
sPath.Replace("$WINDOW", sWindow.Replace_n("/", "?"));
sPath.Replace("$USER", (m_pUser ? m_pUser->GetUserName() : "UNKNOWN"));
// Check if it's allowed to write in this specific path
sPath = CDir::CheckPathPrefix(GetSavePath(), sPath);
if (sPath.empty())
{
DEBUG("Invalid log path ["<<m_sLogPath<<"].");
return;
}
CFile LogFile(sPath);
CString sLogDir = LogFile.GetDir();
if (!CFile::Exists(sLogDir)) CDir::MakeDir(sLogDir);
if (LogFile.Open(O_WRONLY | O_APPEND | O_CREAT))
{
snprintf(buffer, sizeof(buffer), "[%02d:%02d:%02d] ",
timeinfo->tm_hour, timeinfo->tm_min, timeinfo->tm_sec);
LogFile.Write(buffer + sLine + "\n");
} else
DEBUG("Could not open log file [" << sPath << "]: " << strerror(errno));
}
// CDirList::SaveFile()
//
// generate file name based on output dir and time
// file name begins with dir name and ends
// with ".obr" (osiris batch report)
//
//
bool CDirList::SaveFile()
{
bool bRtn = CreateFileName();
if(bRtn)
{
bRtn = SaveFile(m_sFileName);
}
if(bRtn)
{
m_sDirLoad = GetSavePath();
}
else
{
m_sDirLoad.Empty();
m_sDirSave.Empty();
}
return bRtn;
}
void GetCommand(const CString& sLine) {
CString sFile = sLine.Token(1);
CString sAllowedPath = GetSavePath();
CString sAbsolutePath;
if (sFile.empty()) {
PutModule("Usage: Get <file>");
return;
}
sAbsolutePath = CDir::CheckPathPrefix(sAllowedPath, sFile);
if (sAbsolutePath.empty()) {
PutModule("Illegal path.");
return;
}
SendFile(m_pUser->GetNick(), sFile);
}
bool CDirList::LoadFile(const wxString &sFileName)
{
Cleanup();
bool bRtn = nwxXmlPersist::LoadFile(sFileName);
if(bRtn)
{
m_sFileName = sFileName;
wxFileName fn(m_sFileName);
m_sDirLoad = fn.GetPath();
nwxFileUtil::EndWithSeparator(&m_sDirLoad);
m_parmOsiris.SetOutputDirectory(m_sDirLoad);
GetSavePath();
}
else
{
Cleanup();
}
return bRtn;
}
byte * LoadFileIntoMemoryBasic(string fileName, unsigned int *length, bool bUseSavePath, bool bAddBasePath)
{
*length = 0;
if (bAddBasePath)
{
if (bUseSavePath)
{
fileName = GetSavePath() + fileName;
} else
{
fileName = GetBaseAppPath() + fileName;
}
}
FILE *fp = fopen(fileName.c_str(), "rb");
if (!fp)
{
//file not found
return NULL;
}
fseek(fp, 0, SEEK_END);
*length = ftell(fp);
fseek(fp, 0, SEEK_SET);
byte *pData = new byte[(*length) +1];
if (!pData)
{
fclose(fp);
*length = UINT_MAX; //signal a mem error
return NULL;
}
pData[*length] = 0;
fread(pData, *length, 1, fp);
fclose(fp);
//we add an extra null at the end to be nice, when loading text files this can be useful
return pData;
}
void SendCommand(const CString& sLine) {
CString sToNick = sLine.Token(1);
CString sFile = sLine.Token(2);
CString sAllowedPath = GetSavePath();
CString sAbsolutePath;
if ((sToNick.empty()) || (sFile.empty())) {
PutModule("Usage: Send <nick> <file>");
return;
}
sAbsolutePath = CDir::CheckPathPrefix(sAllowedPath, sFile);
if (sAbsolutePath.empty()) {
PutStatus("Illegal path.");
return;
}
SendFile(sToNick, sFile);
}
bool CLogMod::OnLoad(const CString& sArgs, CString& sMessage)
{
// Use load parameter as save path
m_sLogPath = sArgs;
// Add default filename to path if it's a folder
if (GetType() == CModInfo::UserModule) {
if (m_sLogPath.Right(1) == "/" || m_sLogPath.find("$WINDOW") == string::npos || m_sLogPath.find("$NETWORK") == string::npos) {
if (!m_sLogPath.empty()) {
m_sLogPath += "/";
}
m_sLogPath += "$NETWORK_$WINDOW_%Y%m%d.log";
}
} else if (GetType() == CModInfo::NetworkModule) {
if (m_sLogPath.Right(1) == "/" || m_sLogPath.find("$WINDOW") == string::npos) {
if (!m_sLogPath.empty()) {
m_sLogPath += "/";
}
m_sLogPath += "$WINDOW_%Y%m%d.log";
}
} else {
if (m_sLogPath.Right(1) == "/" || m_sLogPath.find("$USER") == string::npos || m_sLogPath.find("$WINDOW") == string::npos || m_sLogPath.find("$NETWORK") == string::npos) {
if (!m_sLogPath.empty()) {
m_sLogPath += "/";
}
m_sLogPath += "$USER_$NETWORK_$WINDOW_%Y%m%d.log";
}
}
// Check if it's allowed to write in this path in general
m_sLogPath = CDir::CheckPathPrefix(GetSavePath(), m_sLogPath);
if (m_sLogPath.empty())
{
sMessage = "Invalid log path ["+m_sLogPath+"].";
return false;
} else {
sMessage = "Logging to ["+m_sLogPath+"].";
return true;
}
}
void CLogMod::PutLog(const CString& sLine, const CString& sWindow /*= "Status"*/)
{
CString sPath;
time_t curtime;
tm* timeinfo;
char buffer[1024];
time(&curtime);
// Don't forget the user's timezone offset (which is in hours and we want seconds)
curtime += (time_t) (m_pUser->GetTimezoneOffset() * 60 * 60);
timeinfo = localtime(&curtime);
/* Generate file name: ~/.znc/users/<user>/moddata/log/WINDOW_YYYYMMDD.log */
CString sWindowFixed(sWindow);
sWindowFixed = sWindowFixed.Replace_n("/", "_");
sWindowFixed = sWindowFixed.Replace_n("\\", "_");
sWindowFixed = sWindowFixed.Replace_n(":", "_");
sWindowFixed = sWindowFixed.Replace_n("*", "_");
sWindowFixed = sWindowFixed.Replace_n("?", "_");
sWindowFixed = sWindowFixed.Replace_n("\"", "_");
sWindowFixed = sWindowFixed.Replace_n("<", "_");
sWindowFixed = sWindowFixed.Replace_n(">", "_");
sWindowFixed = sWindowFixed.Replace_n("|", "_");
sPath = GetSavePath() + "/" + sWindowFixed + "_";
snprintf(buffer, sizeof(buffer), "%04d%02d%02d.log", timeinfo->tm_year + 1900,
timeinfo->tm_mon + 1, timeinfo->tm_mday);
sPath += buffer;
CFile LogFile(sPath);
if (LogFile.Open(O_WRONLY | O_APPEND | O_CREAT))
{
snprintf(buffer, sizeof(buffer), "[%02d:%02d:%02d] ",
timeinfo->tm_hour, timeinfo->tm_min, timeinfo->tm_sec);
LogFile.Write(buffer + sLine + "\n");
} else
DEBUG("Could not open log file [" << sPath << "]: " << strerror(errno));
}
void AddTorrent::MarkExisting (T bool2mark)
{
auto rootPath = GetSavePath ();
if (!rootPath.endsWith ('/'))
rootPath += '/';
QList<QModelIndex> queue { QModelIndex {} };
while (!queue.isEmpty ())
{
const auto& idx = queue.takeFirst ();
if (const auto rc = FilesModel_->rowCount (idx))
for (int i = 0; i < rc; ++i)
queue << FilesModel_->index (i, 0, idx);
else
{
const auto& subpath = idx.data (AddTorrentFilesModel::RoleFullPath).toString ();
const bool exists = QFile::exists (rootPath + subpath);
FilesModel_->setData (idx, bool2mark (exists), Qt::CheckStateRole);
}
}
}
bool App::Init()
{
if (m_bInitted)
{
return true;
}
if (!BaseApp::Init()) return false;
if (GetEmulatedPlatformID() == PLATFORM_ID_IOS || GetEmulatedPlatformID() == PLATFORM_ID_WEBOS)
{
//SetLockedLandscape( true); //if we don't allow portrait mode for this game
//SetManualRotationMode(true); //don't use manual, it may be faster (33% on a 3GS) but we want iOS's smooth rotations
}
LogMsg("The Save path is %s", GetSavePath().c_str());
LogMsg("Region string is %s", GetRegionString().c_str());
#ifdef _DEBUG
LogMsg("Built in debug mode");
#endif
#ifndef C_NO_ZLIB
//fonts need zlib to decompress. When porting a new platform I define C_NO_ZLIB and add zlib support later sometimes
if (!GetFont(FONT_SMALL)->Load("interface/font_trajan.rtfont")) return false;
#endif
GetBaseApp()->SetFPSVisible(true);
GetBaseApp()->SetFPSLimit(30);
/**
* My init stuff
*/
g_game = new game();
g_game->init();
return true;
}
void CLogMod::PutLog(const CString& sLine, const CString& sWindow /*= "Status"*/)
{
CString sPath;
time_t curtime;
time(&curtime);
// Generate file name
sPath = CUtils::FormatTime(curtime, m_sLogPath, m_pUser->GetTimezone());
if (sPath.empty())
{
DEBUG("Could not format log path [" << sPath << "]");
return;
}
// $WINDOW has to be handled last, since it can contain %
sPath.Replace("$NETWORK", (m_pNetwork ? m_pNetwork->GetName() : "znc"));
sPath.Replace("$WINDOW", sWindow.Replace_n("/", "?"));
sPath.Replace("$USER", (m_pUser ? m_pUser->GetUserName() : "UNKNOWN"));
// Check if it's allowed to write in this specific path
sPath = CDir::CheckPathPrefix(GetSavePath(), sPath);
if (sPath.empty())
{
DEBUG("Invalid log path ["<<m_sLogPath<<"].");
return;
}
CFile LogFile(sPath);
CString sLogDir = LogFile.GetDir();
if (!CFile::Exists(sLogDir)) CDir::MakeDir(sLogDir);
if (LogFile.Open(O_WRONLY | O_APPEND | O_CREAT))
{
LogFile.Write(CUtils::FormatTime(curtime, "[%H:%M:%S] ", m_pUser->GetTimezone()) + sLine + "\n");
} else
DEBUG("Could not open log file [" << sPath << "]: " << strerror(errno));
}
bool SendFile(const CString& sRemoteNick, const CString& sFileName) {
CString sFullPath = CDir::ChangeDir(GetSavePath(), sFileName, CZNC::Get().GetHomePath());
CDCCSock* pSock = new CDCCSock(this, sRemoteNick, sFullPath);
CFile* pFile = pSock->OpenFile(false);
if (!pFile) {
delete pSock;
return false;
}
unsigned short uPort = CZNC::Get().GetManager().ListenRand("DCC::LISTEN::" + sRemoteNick, m_pUser->GetLocalDCCIP(), false, SOMAXCONN, pSock, 120);
if (m_pUser->GetNick().Equals(sRemoteNick)) {
PutUser(":*[email protected] PRIVMSG " + sRemoteNick + " :\001DCC SEND " + pFile->GetShortName() + " " + CString(CUtils::GetLongIP(m_pUser->GetLocalDCCIP())) + " "
+ CString(uPort) + " " + CString(pFile->GetSize()) + "\001");
} else {
PutIRC("PRIVMSG " + sRemoteNick + " :\001DCC SEND " + pFile->GetShortName() + " " + CString(CUtils::GetLongIP(m_pUser->GetLocalDCCIP())) + " "
+ CString(uPort) + " " + CString(pFile->GetSize()) + "\001");
}
PutModule("DCC -> [" + sRemoteNick + "][" + pFile->GetShortName() + "] - Attempting Send.");
return true;
}
bool CDirList::CreateFileName(bool bForce)
{
bool bDone = false;
if((!bForce) && m_sFileName.Len())
{
bDone = true;
}
// else if(!wxFileName::Mkdir(m_sDirSave,0755,wxPATH_MKDIR_FULL))
// {
// bDone = false;
// }
else
{
wxString sPathBase = GetSavePath(true);
if(!sPathBase.IsEmpty())
{
wxString sName(sPathBase);
wxString sPath;
nwxFileUtil::NoEndWithSeparator(&sName);
wxFileName fn(sName);
sName = fn.GetFullName();
sName.Replace(" ","_",true);
if(sName.IsEmpty())
{
wxASSERT_MSG(
false,"Problem with CDirList::CreateFileName()");
sName = "run_";
}
else
{
sName.Append("_");
}
wxString sFullName;
wxString sExt(EXT_BATCH);
int nAdd = 0;
sPathBase.Append(sName);
bool bDoneLoop = false;
while(!bDoneLoop)
{
sPath = sPathBase;
sPath.Append(GetTimeStamp(nAdd));
sPath.Append(sExt);
sFullName = nwxFileUtil::SetupFileName(sPath,sExt);
if(sFullName.IsEmpty())
{
bDoneLoop = true; // end loop
wxASSERT_MSG(false,
"sFullName is Empty in CDirList::CreateFileName()");
}
else if(wxFileName::FileExists(sFullName))
{
nAdd++;
}
else
{
wxFile xFile(sFullName.wc_str(),wxFile::write_excl);
if(!xFile.IsOpened())
{
wxString s("Cannot create file: ");
s.Append(sFullName);
wxASSERT_MSG(false,s);
}
else
{
m_sFileName = sFullName;
bDone = true;
}
bDoneLoop = true;
}
}
}
else
{
wxASSERT_MSG(
false,"empty path in CDirList::CreateFileName()");
}
}
return bDone;
}
bool CModule::SaveRegistry() const {
//CString sPrefix = (m_pUser) ? m_pUser->GetUserName() : ".global";
return (m_mssRegistry.WriteToDisk(GetSavePath() + "/.registry", 0600) == MCString::MCS_SUCCESS);
}
bool CModule::LoadRegistry() {
//CString sPrefix = (m_pUser) ? m_pUser->GetUserName() : ".global";
return (m_mssRegistry.ReadFromDisk(GetSavePath() + "/.registry") == MCString::MCS_SUCCESS);
}
CString PemFile() const {
return GetSavePath() + "/user.pem";
}
int BatchedFolderRegistration( int argc, char* argv[] )
{
ctkCommandLineParser parser;
parser.setArgumentPrefix("--","-");
// Add command line argument names
parser.addArgument("help", "h",ctkCommandLineParser::Bool, "Show this help text");
parser.addArgument("xml", "x",ctkCommandLineParser::Bool, "Print a XML description of this modules command line interface");
//parser.addArgument("usemask", "u", QVariant::Bool, "Use segmentations (derived resources) to exclude areas from registration metrics");
parser.addArgument("input", "i", ctkCommandLineParser::String, "Input folder",us::Any(),false);
parser.addArgument("output", "o", ctkCommandLineParser::String, "Output folder (ending with /)",us::Any(),false);
parser.addArgument("fixed", "f", ctkCommandLineParser::String, "Suffix for fixed image",us::Any(),false);
parser.addArgument("moving", "m", ctkCommandLineParser::String, "Suffix for moving images",us::Any(),false);
parser.addArgument("derived", "d", ctkCommandLineParser::String, "Derived resources suffixes (replaces suffix for moving images); comma separated",us::Any(),true);
parser.addArgument("silent", "s", ctkCommandLineParser::Bool, "No xml progress output.");
// Feature currently disabled
//parser.addArgument("resample", "r", QVariant::String, "Reference Image for resampling (optional), is not applied to tensor data");
map<string, us::Any> parsedArgs = parser.parseArguments(argc, argv);
// Handle special arguments
bool silent = false;
{
if (parsedArgs.size() == 0)
{
MITK_ERROR << "Missig arguements" ;
return EXIT_FAILURE;
}
if (parsedArgs.count("xml"))
{
MITK_ERROR << "This is to be handled by shell script";
return EXIT_SUCCESS;
}
if (parsedArgs.count("silent"))
silent = true;
// Show a help message
if ( parsedArgs.count("help") || parsedArgs.count("h"))
{
std::cout << parser.helpText();
return EXIT_SUCCESS;
}
}
std::string outputPath = us::any_cast<string>(parsedArgs["output"]);
std::string refPattern = us::any_cast<string>(parsedArgs["fixed"]);
std::string inputPath = us::any_cast<string>(parsedArgs["input"]);
std::string movingImgPattern = us::any_cast<string>(parsedArgs["moving"]);
//QString resampleReference = parsedArgs["resample"].toString();
//bool maskTumor = parsedArgs["usemask"].toBool();
// if derived sources pattern is provided, populate QStringList with possible filename postfixes
std::vector<std::string> derPatterns;
if (parsedArgs.count("derived") || parsedArgs.count("d") )
{
std::string arg = us::any_cast<string>(parsedArgs["derived"]);
derPatterns = split(arg ,',');
}
MITK_INFO << "Input Folder : " << inputPath;
MITK_INFO << "Looking for reference image ...";
FileListType referenceFileList = CreateFileList(inputPath,refPattern);
if (referenceFileList.size() != 1)
{
MITK_ERROR << "None or more than one possible reference images (" << refPattern <<") found. Exiting." << referenceFileList.size();
MITK_INFO << "Choose a fixed arguement that is unique in the given folder!";
return EXIT_FAILURE;
}
std::string referenceFileName = referenceFileList.at(0);
MITK_INFO << "Loading Reference (fixed) image: " << referenceFileName;
mitk::Image::Pointer refImage = mitk::IOUtil::LoadImage(referenceFileName);
if (refImage.IsNull())
MITK_ERROR << "Loaded fixed image is NULL";
// Copy reference image to destination
std::string savePathAndFileName = GetSavePath(outputPath, referenceFileName);
mitk::IOUtil::SaveImage(refImage, savePathAndFileName);
// Copy all derived resources also to output folder, adding _reg suffix
referenceFileList = CreateDerivedFileList(referenceFileName, movingImgPattern,derPatterns);
CopyResources(referenceFileList, outputPath);
std::string derivedResourceFilename;
mitk::Image::Pointer referenceMask = NULL; // union of all segmentations
if (!silent)
{
// XML Output to report progress
std::cout << "<filter-start>";
std::cout << "<filter-name>Batched Registration</filter-name>";
std::cout << "<filter-comment>Starting registration ... </filter-comment>";
std::cout << "</filter-start>";
}
// Now iterate over all files and register them to the reference image,
// also register derived resources based on file patterns
// ------------------------------------------------------------------------------
// Create File list
FileListType movingImagesList = CreateFileList(inputPath, movingImgPattern);
// TODO Reactivate Resampling Feature
// mitk::Image::Pointer resampleImage = NULL;
// if (QFileInfo(resampleReference).isFile())
// {
// resampleImage = mitk::IOUtil::LoadImage(resampleReference.toStdString());
// }
for (unsigned int i =0; i < movingImagesList.size(); i++)
{
std::string fileMorphName = movingImagesList.at(i);
if (fileMorphName == referenceFileName)
{
// do not process reference image again
continue;
}
MITK_INFO << "Processing image " << fileMorphName;
// 1 Register morphological file to reference image
if (!itksys::SystemTools::FileExists(fileMorphName.c_str()))
{
MITK_WARN << "File does not exit. Skipping entry.";
continue;
}
// Origin of images is cancelled
// TODO make this optional!!
double transf[6];
double offset[3];
{
mitk::Image::Pointer movingImage = mitk::IOUtil::LoadImage(fileMorphName);
MITK_ERROR << "REF COUNT MOVING 0 " << movingImage->GetReferenceCount();
if (movingImage.IsNull())
MITK_ERROR << "Loaded moving image is NULL";
// Store transformation, apply it to morph file
MITK_INFO << "----------Registering moving image to reference----------";
MITK_ERROR << "REF COUNT MOVING 1 " << movingImage->GetReferenceCount();
//mitk::RegistrationWrapper::GetTransformation(refImage, movingImage, transf, offset, referenceMask);
MITK_ERROR << "REF COUNT MOVING 2 " << movingImage->GetReferenceCount();
mitk::RegistrationWrapper::ApplyTransformationToImage(movingImage, transf,offset, NULL); // , resampleImage
MITK_ERROR << "REF COUNT MOVING 3 " << movingImage->GetReferenceCount();
savePathAndFileName = GetSavePath(outputPath, fileMorphName);
std::string fileType = itksys::SystemTools::GetFilenameExtension(fileMorphName);
SaveImage(savePathAndFileName,movingImage,fileType );
}
if (!silent)
{
std::cout << "<filter-progress-text progress=\"" <<
(float)i / (float)movingImagesList.size()
<< "\" >.</filter-progress-text>";
}
// Now parse all derived resource and apply the above calculated transformation to them
// ------------------------------------------------------------------------------------
FileListType fList = CreateDerivedFileList(fileMorphName, movingImgPattern,derPatterns);
if (fList.size() > 0)
MITK_INFO << "----------DERIVED RESOURCES ---------";
for (unsigned int j=0; j < fList.size(); j++)
{
derivedResourceFilename = fList.at(j);
MITK_INFO << "----Processing derived resource " << derivedResourceFilename << " ...";
mitk::Image::Pointer derivedMovingResource = mitk::IOUtil::LoadImage(derivedResourceFilename);
// Apply transformation to derived resource, treat derived resource as binary
mitk::RegistrationWrapper::ApplyTransformationToImage(derivedMovingResource, transf,offset, NULL, true);
savePathAndFileName = GetSavePath(outputPath, derivedResourceFilename);
std::string fileType = itksys::SystemTools::GetFilenameExtension(derivedResourceFilename);
SaveImage(savePathAndFileName,derivedMovingResource,fileType );
}
}
if (!silent)
std::cout << "<filter-end/>";
return EXIT_SUCCESS;
}
