/*-------------------------------------------------------------------------
* Function: H5MF_aggr_alloc
*
* Purpose: Try to allocate SIZE bytes of memory from an aggregator
* block if possible.
*
* Return: Success: The format address of the new file memory.
* Failure: The undefined address HADDR_UNDEF
*
* Programmer: Quincey Koziol
* Thursday, December 13, 2007
*
*-------------------------------------------------------------------------
*/
haddr_t
H5MF_aggr_alloc(H5F_t *f, hid_t dxpl_id, H5F_blk_aggr_t *aggr,
H5F_blk_aggr_t *other_aggr, H5FD_mem_t type, hsize_t size)
{
haddr_t eoa_frag_addr = HADDR_UNDEF; /* Address of fragment at EOA */
hsize_t eoa_frag_size = 0; /* Size of fragment at EOA */
haddr_t eoa = HADDR_UNDEF; /* Initial EOA for the file */
haddr_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(HADDR_UNDEF)
#ifdef H5MF_AGGR_DEBUG
HDfprintf(stderr, "%s: type = %u, size = %Hu\n", FUNC, (unsigned)type, size);
#endif /* H5MF_AGGR_DEBUG */
/* check args */
HDassert(f);
HDassert(aggr);
HDassert(aggr->feature_flag == H5FD_FEAT_AGGREGATE_METADATA || aggr->feature_flag == H5FD_FEAT_AGGREGATE_SMALLDATA);
HDassert(other_aggr);
HDassert(other_aggr->feature_flag == H5FD_FEAT_AGGREGATE_METADATA || other_aggr->feature_flag == H5FD_FEAT_AGGREGATE_SMALLDATA);
HDassert(other_aggr->feature_flag != aggr->feature_flag);
HDassert(type >= H5FD_MEM_DEFAULT && type < H5FD_MEM_NTYPES);
HDassert(size > 0);
/* Get the EOA for the file */
if(HADDR_UNDEF == (eoa = H5F_get_eoa(f, type)))
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, HADDR_UNDEF, "Unable to get eoa")
/*
* If the aggregation feature is enabled for this file and strategy is not H5F_FILE_SPACE_VFD,
* allocate "generic" space and sub-allocate out of that, if possible.
* Otherwise just allocate through H5FD_alloc().
*/
if((f->shared->feature_flags & aggr->feature_flag) && f->shared->fs_strategy != H5F_FILE_SPACE_VFD) {
haddr_t aggr_frag_addr = HADDR_UNDEF; /* Address of aggregrator fragment */
hsize_t aggr_frag_size = 0; /* Size of aggregator fragment */
hsize_t alignment; /* Alignment of this section */
hsize_t aggr_mis_align = 0; /* Mis-alignment of aggregator */
H5FD_mem_t alloc_type, other_alloc_type;/* Current aggregator & 'other' aggregator types */
#ifdef H5MF_AGGR_DEBUG
HDfprintf(stderr, "%s: aggr = {%a, %Hu, %Hu}\n", FUNC, aggr->addr, aggr->tot_size, aggr->size);
#endif /* H5MF_AGGR_DEBUG */
/* Turn off alignment if allocation < threshold */
alignment = f->shared->alignment;
if(!((alignment > 1) && (size >= f->shared->threshold)))
alignment = 0; /* no alignment */
/* Generate fragment if aggregator is mis-aligned */
if(alignment && aggr->addr > 0 && aggr->size > 0 && (aggr_mis_align = (aggr->addr + H5FD_get_base_addr(f->shared->lf)) % alignment)) {
aggr_frag_addr = aggr->addr;
aggr_frag_size = alignment - aggr_mis_align;
} /* end if */
alloc_type = aggr->feature_flag == H5FD_FEAT_AGGREGATE_METADATA ? H5FD_MEM_DEFAULT : H5FD_MEM_DRAW;
other_alloc_type = other_aggr->feature_flag == H5FD_FEAT_AGGREGATE_METADATA ? H5FD_MEM_DEFAULT : H5FD_MEM_DRAW;
/* Check if the space requested is larger than the space left in the block */
if((size + aggr_frag_size) > aggr->size) {
htri_t was_extended = FALSE; /* Whether the file was extended */
/* Check if the block asked for is too large for 'normal' aggregator block */
if(size >= aggr->alloc_size) {
hsize_t ext_size = size + aggr_frag_size;
/* Check for overlapping into file's temporary allocation space */
if(H5F_addr_gt((aggr->addr + aggr->size + ext_size), f->shared->tmp_addr))
HGOTO_ERROR(H5E_RESOURCE, H5E_BADRANGE, HADDR_UNDEF, "'normal' file space allocation request will overlap into 'temporary' file space")
if ((aggr->addr > 0) && (was_extended = H5FD_try_extend(f->shared->lf, alloc_type, f, aggr->addr + aggr->size, ext_size)) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't extending space")
else if (was_extended) {
/* aggr->size is unchanged */
ret_value = aggr->addr + aggr_frag_size;
aggr->addr += ext_size;
aggr->tot_size += ext_size;
} else {
/* Check for overlapping into file's temporary allocation space */
if(H5F_addr_gt((eoa + size), f->shared->tmp_addr))
HGOTO_ERROR(H5E_RESOURCE, H5E_BADRANGE, HADDR_UNDEF, "'normal' file space allocation request will overlap into 'temporary' file space")
/* Release "other" aggregator, if it exists, is at the end of the allocated space,
* has allocated more than one block and the unallocated space is greater than its
* allocation block size.
*/
if ((other_aggr->size > 0) && (H5F_addr_eq((other_aggr->addr + other_aggr->size), eoa)) &&
(other_aggr->tot_size > other_aggr->size) && ((other_aggr->tot_size - other_aggr->size) >= other_aggr->alloc_size)) {
if(H5MF_aggr_free(f, dxpl_id, other_alloc_type, other_aggr) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free aggregation block")
} /* end if */
/* Allocate space from the VFD (i.e. at the end of the file) */
if(HADDR_UNDEF == (ret_value = H5FD_alloc(f->shared->lf, dxpl_id, alloc_type, f, size, &eoa_frag_addr, &eoa_frag_size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, HADDR_UNDEF, "can't allocate aggregation block")
} /* end else */
} /* end if */
/*------------------------------------------------------------------------- * Function: H5F_sblock_load * * Purpose: Loads the superblock from the file, and deserializes * its information into the H5F_super_t structure. * * Return: Success: SUCCEED * Failure: NULL * * Programmer: Mike McGreevy * [email protected] * April 8, 2009 * *------------------------------------------------------------------------- */ static H5F_super_t * H5F_sblock_load(H5F_t *f, hid_t dxpl_id, haddr_t UNUSED addr, void *_udata) { H5F_super_t *sblock = NULL; /* File's superblock */ haddr_t base_addr = HADDR_UNDEF; /* Base address of file */ uint8_t sbuf[H5F_MAX_SUPERBLOCK_SIZE]; /* Buffer for superblock */ H5P_genplist_t *dxpl; /* DXPL object */ H5P_genplist_t *c_plist; /* File creation property list */ H5F_file_t *shared; /* shared part of `file' */ H5FD_t *lf; /* file driver part of `shared' */ haddr_t stored_eoa; /*relative end-of-addr in file */ haddr_t eof; /*end of file address */ uint8_t sizeof_addr; /* Size of offsets in the file (in bytes) */ uint8_t sizeof_size; /* Size of lengths in the file (in bytes) */ const size_t fixed_size = H5F_SUPERBLOCK_FIXED_SIZE; /*fixed sizeof superblock */ size_t variable_size; /*variable sizeof superblock */ uint8_t *p; /* Temporary pointer into encoding buffer */ unsigned super_vers; /* Superblock version */ hbool_t *dirtied = (hbool_t *)_udata; /* Set up dirtied out value */ H5F_super_t *ret_value; /* Return value */ FUNC_ENTER_NOAPI_NOINIT /* check arguments */ HDassert(f); HDassert(H5F_addr_eq(addr, 0)); HDassert(dirtied); /* Short cuts */ shared = f->shared; lf = shared->lf; /* Get the shared file creation property list */ if(NULL == (c_plist = (H5P_genplist_t *)H5I_object(shared->fcpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "can't get property list") /* Get the base address for the file in the VFD */ if(HADDR_UNDEF == (base_addr = H5FD_get_base_addr(lf))) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "failed to get base address for file driver") /* Allocate space for the superblock */ if(NULL == (sblock = H5FL_CALLOC(H5F_super_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Get the DXPL plist object for DXPL ID */ if(NULL == (dxpl = (H5P_genplist_t *)H5I_object(dxpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "can't get property list") /* Read fixed-size portion of the superblock */ p = sbuf; H5_CHECK_OVERFLOW(fixed_size, size_t, haddr_t); if(H5FD_set_eoa(lf, H5FD_MEM_SUPER, (haddr_t)fixed_size) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "set end of space allocation request failed") if(H5FD_read(lf, dxpl, H5FD_MEM_SUPER, (haddr_t)0, fixed_size, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_READERROR, NULL, "unable to read superblock") /* Skip over signature (already checked when locating the superblock) */ p += H5F_SIGNATURE_LEN; /* Superblock version */ super_vers = *p++; if(super_vers > HDF5_SUPERBLOCK_VERSION_LATEST) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad superblock version number") if(H5P_set(c_plist, H5F_CRT_SUPER_VERS_NAME, &super_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set superblock version") /* Record the superblock version */ sblock->super_vers = super_vers; /* Sanity check */ HDassert(((size_t)(p - sbuf)) == fixed_size); /* Determine the size of the variable-length part of the superblock */ variable_size = (size_t)H5F_SUPERBLOCK_VARLEN_SIZE(super_vers, f); HDassert(variable_size > 0); HDassert(fixed_size + variable_size <= sizeof(sbuf)); /* Read in variable-sized portion of superblock */ if(H5FD_set_eoa(lf, H5FD_MEM_SUPER, (haddr_t)(fixed_size + variable_size)) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "set end of space allocation request failed") if(H5FD_read(lf, dxpl, H5FD_MEM_SUPER, (haddr_t)fixed_size, variable_size, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to read superblock") /* Check for older version of superblock format */ if(super_vers < HDF5_SUPERBLOCK_VERSION_2) { uint32_t status_flags; /* File status flags */ unsigned btree_k[H5B_NUM_BTREE_ID]; /* B-tree internal node 'K' values */ unsigned sym_leaf_k; /* Symbol table leaf node's 'K' value */ /* Freespace version (hard-wired) */ if(HDF5_FREESPACE_VERSION != *p++) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad free space version number") /* Root group version number (hard-wired) */ if(HDF5_OBJECTDIR_VERSION != *p++) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad object directory version number") /* Skip over reserved byte */ p++; /* Shared header version number (hard-wired) */ if(HDF5_SHAREDHEADER_VERSION != *p++) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad shared-header format version number") /* Size of file addresses */ sizeof_addr = *p++; if(sizeof_addr != 2 && sizeof_addr != 4 && sizeof_addr != 8 && sizeof_addr != 16 && sizeof_addr != 32) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad byte number in an address") if(H5P_set(c_plist, H5F_CRT_ADDR_BYTE_NUM_NAME, &sizeof_addr) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set byte number in an address") shared->sizeof_addr = sizeof_addr; /* Keep a local copy also */ /* Size of file sizes */ sizeof_size = *p++; if(sizeof_size != 2 && sizeof_size != 4 && sizeof_size != 8 && sizeof_size != 16 && sizeof_size != 32) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad byte number for object size") if(H5P_set(c_plist, H5F_CRT_OBJ_BYTE_NUM_NAME, &sizeof_size) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set byte number for object size") shared->sizeof_size = sizeof_size; /* Keep a local copy also */ /* Skip over reserved byte */ p++; /* Various B-tree sizes */ UINT16DECODE(p, sym_leaf_k); if(sym_leaf_k == 0) HGOTO_ERROR(H5E_FILE, H5E_BADRANGE, NULL, "bad symbol table leaf node 1/2 rank") if(H5P_set(c_plist, H5F_CRT_SYM_LEAF_NAME, &sym_leaf_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set rank for symbol table leaf nodes") sblock->sym_leaf_k = sym_leaf_k; /* Keep a local copy also */ /* Need 'get' call to set other array values */ if(H5P_get(c_plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "unable to get rank for btree internal nodes") UINT16DECODE(p, btree_k[H5B_SNODE_ID]); if(btree_k[H5B_SNODE_ID] == 0) HGOTO_ERROR(H5E_FILE, H5E_BADRANGE, NULL, "bad 1/2 rank for btree internal nodes") /* * Delay setting the value in the property list until we've checked * for the indexed storage B-tree internal 'K' value later. */ /* File status flags (not really used yet) */ UINT32DECODE(p, status_flags); HDassert(status_flags <= 255); sblock->status_flags = (uint8_t)status_flags; if(sblock->status_flags & ~H5F_SUPER_ALL_FLAGS) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad flag value for superblock") /* * If the superblock version # is greater than 0, read in the indexed * storage B-tree internal 'K' value */ if(super_vers > HDF5_SUPERBLOCK_VERSION_DEF) { UINT16DECODE(p, btree_k[H5B_CHUNK_ID]); /* Reserved bytes are present only in version 1 */ if(super_vers == HDF5_SUPERBLOCK_VERSION_1) p += 2; /* reserved */ } /* end if */ else btree_k[H5B_CHUNK_ID] = HDF5_BTREE_CHUNK_IK_DEF; /* Set the B-tree internal node values, etc */ if(H5P_set(c_plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set rank for btree internal nodes") HDmemcpy(sblock->btree_k, btree_k, sizeof(unsigned) * (size_t)H5B_NUM_BTREE_ID); /* Keep a local copy also */ /* Remainder of "variable-sized" portion of superblock */ H5F_addr_decode(f, (const uint8_t **)&p, &sblock->base_addr/*out*/); H5F_addr_decode(f, (const uint8_t **)&p, &sblock->ext_addr/*out*/); H5F_addr_decode(f, (const uint8_t **)&p, &stored_eoa/*out*/); H5F_addr_decode(f, (const uint8_t **)&p, &sblock->driver_addr/*out*/); /* Allocate space for the root group symbol table entry */ HDassert(!sblock->root_ent); if(NULL == (sblock->root_ent = (H5G_entry_t *)H5MM_calloc(sizeof(H5G_entry_t)))) HGOTO_ERROR(H5E_FILE, H5E_CANTALLOC, NULL, "can't allocate space for root group symbol table entry") /* decode the root group symbol table entry */ if(H5G_ent_decode(f, (const uint8_t **)&p, sblock->root_ent) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTDECODE, NULL, "can't decode root group symbol table entry") /* Set the root group address to the correct value */ sblock->root_addr = sblock->root_ent->header; /* * Check if superblock address is different from base address and * adjust base address and "end of address" address if so. */ if(!H5F_addr_eq(base_addr, sblock->base_addr)) { /* Check if the superblock moved earlier in the file */ if(H5F_addr_lt(base_addr, sblock->base_addr)) stored_eoa -= (sblock->base_addr - base_addr); else /* The superblock moved later in the file */ stored_eoa += (base_addr - sblock->base_addr); /* Adjust base address for offsets of the HDF5 data in the file */ sblock->base_addr = base_addr; /* Set the base address for the file in the VFD now */ if(H5FD_set_base_addr(lf, sblock->base_addr) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTSET, NULL, "failed to set base address for file driver") /* Indicate that the superblock should be marked dirty */ *dirtied = TRUE; } /* end if */ /* This step is for h5repart tool only. If user wants to change file driver * from family to sec2 while using h5repart, set the driver address to * undefined to let the library ignore the family driver information saved * in the superblock. */ if(H5F_HAS_FEATURE(f, H5FD_FEAT_IGNORE_DRVRINFO)) { /* Eliminate the driver info */ sblock->driver_addr = HADDR_UNDEF; /* Indicate that the superblock should be marked dirty */ *dirtied = TRUE; } /* end if */ /* Decode the optional driver information block */ if(H5F_addr_defined(sblock->driver_addr)) { uint8_t dbuf[H5F_MAX_DRVINFOBLOCK_SIZE]; /* Buffer for driver info block */ char drv_name[9]; /* Name of driver */ unsigned drv_vers; /* Version of driver info block */ size_t drv_variable_size; /* Size of variable-length portion of driver info block, in bytes */ /* Read in fixed-sized portion of driver info block */ p = dbuf; if(H5FD_set_eoa(lf, H5FD_MEM_SUPER, sblock->driver_addr + H5F_DRVINFOBLOCK_HDR_SIZE) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "set end of space allocation request failed") if(H5FD_read(lf, dxpl, H5FD_MEM_SUPER, sblock->driver_addr, (size_t)H5F_DRVINFOBLOCK_HDR_SIZE, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to read driver information block") /* Version number */ drv_vers = *p++; if(drv_vers != HDF5_DRIVERINFO_VERSION_0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "bad driver information block version number") p += 3; /* reserved bytes */ /* Driver info size */ UINT32DECODE(p, drv_variable_size); /* Sanity check */ HDassert(H5F_DRVINFOBLOCK_HDR_SIZE + drv_variable_size <= sizeof(dbuf)); /* Driver name and/or version */ HDstrncpy(drv_name, (const char *)p, (size_t)8); drv_name[8] = '\0'; p += 8; /* advance past name/version */ /* Check if driver matches driver information saved. Unfortunately, we can't push this * function to each specific driver because we're checking if the driver is correct. */ if(!HDstrncmp(drv_name, "NCSAfami", (size_t)8) && HDstrcmp(lf->cls->name, "family")) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "family driver should be used") if(!HDstrncmp(drv_name, "NCSAmult", (size_t)8) && HDstrcmp(lf->cls->name, "multi")) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "multi driver should be used") /* Read in variable-sized portion of driver info block */ if(H5FD_set_eoa(lf, H5FD_MEM_SUPER, sblock->driver_addr + H5F_DRVINFOBLOCK_HDR_SIZE + drv_variable_size) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "set end of space allocation request failed") if(H5FD_read(lf, dxpl, H5FD_MEM_SUPER, sblock->driver_addr + H5F_DRVINFOBLOCK_HDR_SIZE, drv_variable_size, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to read file driver information") /* Decode driver information */ if(H5FD_sb_decode(lf, drv_name, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to decode driver information") } /* end if */