Esempio n. 1
0
herr_t set_cache_size(hid_t file_id, size_t cache_size) {
#if H5_VERS_MAJOR == 1 && H5_VERS_MINOR >= 7
  /* MSVS2005 chokes on declarations after statements */
  H5AC_cache_config_t config;
#endif /* if H5_VERSION < "1.7" */
  herr_t code;

  code = 0;

#if H5_VERS_MAJOR == 1 && H5_VERS_MINOR >= 7
  config.version = H5AC__CURR_CACHE_CONFIG_VERSION;
  code = H5Fget_mdc_config(file_id, &config);
  config.set_initial_size = TRUE;
  config.initial_size = cache_size;
/*   config.incr_mode = H5C_incr__off; */
/*   config.decr_mode = H5C_decr__off; */
/*   printf("Setting cache size to: %d\n", cache_size); */
  code = H5Fset_mdc_config(file_id, &config);
/*   printf("Return code for H5Fset_mdc_config: %d\n", code); */

#endif /* if H5_VERSION < "1.7" */

  return code;

}
Esempio n. 2
0
/*-------------------------------------------------------------------------
 * Function:    addrem_records
 *
 * Purpose:     Adds/removes a specified number of records to random datasets
 *              to the SWMR test file.
 *
 * Parameters:  hid_t fid
 *              The file ID of the SWMR HDF5 file
 *
 *              unsigned verbose
 *              Whether or not to emit verbose console messages
 *
 *              unsigned long nops
 *              # of records to read/write in the datasets
 *
 *              unsigned long flush_count
 *              # of records to write before flushing the file to disk
 *
 * Return:      Success:    0
 *              Failure:    -1
 *
 *-------------------------------------------------------------------------
 */
static int
addrem_records(hid_t fid, unsigned verbose, unsigned long nops, unsigned long flush_count)
{
    hid_t tid;                          /* Datatype ID for records */
    hid_t mem_sid;                      /* Memory dataspace ID */
    hsize_t start[2] = {0, 0}, count[2] = {1, 1}; /* Hyperslab selection values */
    hsize_t dim[2] = {1, 0};            /* Dataspace dimensions */
    symbol_t buf[MAX_SIZE_CHANGE];      /* Write buffer */
    H5AC_cache_config_t mdc_config_orig; /* Original metadata cache configuration */
    H5AC_cache_config_t mdc_config_cork; /* Corked metadata cache configuration */
    unsigned long op_to_flush;          /* # of operations before flush */
    unsigned long u, v;                 /* Local index variables */

    assert(fid > 0);

    /* Reset the buffer */
    memset(&buf, 0, sizeof(buf));

    /* Create a dataspace for the record to add */
    if((mem_sid = H5Screate_simple(2, count, NULL)) < 0)
        return -1;

    /* Create datatype for appending records */
    if((tid = create_symbol_datatype()) < 0)
        return -1;

    /* Get the current metadata cache configuration, and set up the corked
     * configuration */
    mdc_config_orig.version = H5AC__CURR_CACHE_CONFIG_VERSION;
    if(H5Fget_mdc_config(fid, &mdc_config_orig) < 0)
        return -1;
    memcpy(&mdc_config_cork, &mdc_config_orig, sizeof(mdc_config_cork));
    mdc_config_cork.evictions_enabled = FALSE;
    mdc_config_cork.incr_mode = H5C_incr__off;
    mdc_config_cork.flash_incr_mode = H5C_flash_incr__off;
    mdc_config_cork.decr_mode = H5C_decr__off;

    /* Add and remove records to random datasets, according to frequency
     * distribution */
    op_to_flush = flush_count;
    for(u=0; u<nops; u++) {
        symbol_info_t *symbol;  /* Symbol to write record to */
        hid_t file_sid;         /* Dataset's space ID */

        /* Get a random dataset, according to the symbol distribution */
        symbol = choose_dataset();

        /* Decide whether to shrink or expand, and by how much */
        count[1] = (hsize_t)random() % (MAX_SIZE_CHANGE * 2) + 1;

        if(count[1] > MAX_SIZE_CHANGE) {
            /* Add records */
            count[1] -= MAX_SIZE_CHANGE;

            /* Set the buffer's IDs (equal to its position) */
            for(v=0; v<count[1]; v++)
                buf[v].rec_id = (uint64_t)symbol->nrecords + (uint64_t)v;

            /* Set the memory space to the correct size */
            if(H5Sset_extent_simple(mem_sid, 2, count, NULL) < 0)
                return -1;

            /* Get the coordinates to write */
            start[1] = symbol->nrecords;

            /* Cork the metadata cache, to prevent the object header from being
             * flushed before the data has been written */
            /*if(H5Fset_mdc_config(fid, &mdc_config_cork) < 0)
                return(-1);*/

             /* Extend the dataset's dataspace to hold the new record */
            symbol->nrecords+= count[1];
            dim[1] = symbol->nrecords;
            if(H5Dset_extent(symbol->dsid, dim) < 0)
                return -1;

            /* Get the dataset's dataspace */
            if((file_sid = H5Dget_space(symbol->dsid)) < 0)
                return -1;

            /* Choose the last record in the dataset */
            if(H5Sselect_hyperslab(file_sid, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
                return -1;

            /* Write record to the dataset */
            if(H5Dwrite(symbol->dsid, tid, mem_sid, file_sid, H5P_DEFAULT, &buf) < 0)
                return -1;

            /* Uncork the metadata cache */
            /*if(H5Fset_mdc_config(fid, &mdc_config_orig) < 0)
                return -1;*/

            /* Close the dataset's dataspace */
            if(H5Sclose(file_sid) < 0)
                return -1;
        } /* end if */
        else {
            /* Shrink the dataset's dataspace */
            if(count[1] > symbol->nrecords)
                symbol->nrecords = 0;
            else
                symbol->nrecords -= count[1];
            dim[1] = symbol->nrecords;
            if(H5Dset_extent(symbol->dsid, dim) < 0)
                return -1;
        } /* end else */

        /* Check for flushing file */
        if(flush_count > 0) {
            /* Decrement count of records to write before flushing */
            op_to_flush--;

            /* Check for counter being reached */
            if(0 == op_to_flush) {
                /* Flush contents of file */
                if(H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0)
                    return -1;

                /* Reset flush counter */
                op_to_flush = flush_count;
            } /* end if */
        } /* end if */
    } /* end for */

    /* Emit informational message */
    if(verbose)
        fprintf(stderr, "Closing datasets\n");

    /* Close the datasets */
    for(u = 0; u < NLEVELS; u++)
        for(v = 0; v < symbol_count[u]; v++)
            if(H5Dclose(symbol_info[u][v].dsid) < 0)
                return -1;

    return 0;
}
Esempio n. 3
0
/*-------------------------------------------------------------------------
 * Function:    add_records
 *
 * Purpose:     Writes a specified number of records to random datasets in
 *              the SWMR test file.
 *
 * Parameters:  hid_t fid
 *              The file ID of the SWMR HDF5 file
 *
 *              unsigned verbose
 *              Whether or not to emit verbose console messages
 *
 *              unsigned long nrecords
 *              # of records to write to the datasets
 *
 *              unsigned long flush_count
 *              # of records to write before flushing the file to disk
 *
 * Return:      Success:    0
 *              Failure:    -1
 *
 *-------------------------------------------------------------------------
 */
static int
add_records(hid_t fid, unsigned verbose, unsigned long nrecords, unsigned long flush_count)
{
    hid_t tid;                          /* Datatype ID for records */
    hid_t mem_sid;                      /* Memory dataspace ID */
    hsize_t start[2] = {0, 0};          /* Hyperslab selection values */
    hsize_t count[2] = {1, 1};          /* Hyperslab selection values */
    symbol_t record;                    /* The record to add to the dataset */
    H5AC_cache_config_t mdc_config_orig; /* Original metadata cache configuration */
    H5AC_cache_config_t mdc_config_cork; /* Corked metadata cache configuration */
    unsigned long rec_to_flush;         /* # of records left to write before flush */
    volatile int dummy;                 /* Dummy varialbe for busy sleep */
    hsize_t dim[2] = {1,0};             /* Dataspace dimensions */
    unsigned long u, v;                 /* Local index variables */

    HDassert(fid >= 0);

    /* Reset the record */
    /* (record's 'info' field might need to change for each record written, also) */
    HDmemset(&record, 0, sizeof(record));

    /* Create a dataspace for the record to add */
    if((mem_sid = H5Screate(H5S_SCALAR)) < 0)
        return -1;

    /* Create datatype for appending records */
    if((tid = create_symbol_datatype()) < 0)
        return -1;

    /* Get the current metadata cache configuration, and set up the corked
     * configuration */
    mdc_config_orig.version = H5AC__CURR_CACHE_CONFIG_VERSION;
    if(H5Fget_mdc_config(fid, &mdc_config_orig) < 0)
        return -1;
    HDmemcpy(&mdc_config_cork, &mdc_config_orig, sizeof(mdc_config_cork));
    mdc_config_cork.evictions_enabled = FALSE;
    mdc_config_cork.incr_mode = H5C_incr__off;
    mdc_config_cork.flash_incr_mode = H5C_flash_incr__off;
    mdc_config_cork.decr_mode = H5C_decr__off;

    /* Add records to random datasets, according to frequency distribution */
    rec_to_flush = flush_count;
    for(u = 0; u < nrecords; u++) {
        symbol_info_t *symbol;  /* Symbol to write record to */
        hid_t file_sid;         /* Dataset's space ID */
        hid_t aid;              /* Attribute ID */

        /* Get a random dataset, according to the symbol distribution */
        symbol = choose_dataset();

        /* Cork the metadata cache, to prevent the object header from being
         * flushed before the data has been written */
        /*if(H5Fset_mdc_config(fid, &mdc_config_cork) < 0)
            return(-1);*/

        /* If this is the first time the dataset has been opened, extend it and
         * add the sequence attribute */
        if(symbol->nrecords == 0) {
            symbol->nrecords = nrecords / 5;
            dim[1] = symbol->nrecords;

            if(H5Dset_extent(symbol->dsid, dim) < 0)
                return -1;

            if((file_sid = H5Screate(H5S_SCALAR)) < 0)
                return -1;
            if((aid = H5Acreate2(symbol->dsid, "seq", H5T_NATIVE_ULONG, file_sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
                return -1;
            if(H5Sclose(file_sid) < 0)
                return -1;
        } /* end if */
        else if((aid = H5Aopen(symbol->dsid, "seq", H5P_DEFAULT)) < 0)
            return -1;

        /* Get the coordinate to write */
        start[1] = (hsize_t)HDrandom() % symbol->nrecords;

        /* Set the record's ID (equal to its position) */
        record.rec_id = start[1];

        /* Get the dataset's dataspace */
        if((file_sid = H5Dget_space(symbol->dsid)) < 0)
            return -1;

        /* Choose a random record in the dataset */
        if(H5Sselect_hyperslab(file_sid, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
            return -1;

        /* Write record to the dataset */
        if(H5Dwrite(symbol->dsid, tid, mem_sid, file_sid, H5P_DEFAULT, &record) < 0)
            return -1;

        /* Write the sequence number attribute.  Since we synchronize the random
         * number seed, the readers will always generate the same sequence of
         * randomly chosen datasets and offsets.  Therefore, and because of the
         * flush dependencies on the object header, the reader will be
         * guaranteed to see the written data if the sequence attribute is >=u.
         */
        if(H5Awrite(aid, H5T_NATIVE_ULONG, &u) < 0)
            return -1;

        /* Close the attribute */
        if(H5Aclose(aid) < 0)
            return -1;

        /* Uncork the metadata cache */
        /*if(H5Fset_mdc_config(fid, &mdc_config_orig) < 0)
            return(-1);*/

        /* Close the dataset's dataspace */
        if(H5Sclose(file_sid) < 0)
            return -1;

        /* Check for flushing file */
        if(flush_count > 0) {
            /* Decrement count of records to write before flushing */
            rec_to_flush--;

            /* Check for counter being reached */
            if(0 == rec_to_flush) {
                /* Flush contents of file */
                if(H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0)
                    return -1;

                /* Reset flush counter */
                rec_to_flush = flush_count;
            } /* end if */
        } /* end if */

#ifdef OUT
        /* Busy wait, to let readers catch up */
        /* If this is removed, also remove the BUSY_WAIT symbol
         * at the top of the file.
         */
        dummy = 0;
        for(v=0; v<BUSY_WAIT; v++)
            dummy++;
        if((unsigned long)dummy != v)
            return -1;
#endif /* OUT */

    } /* end for */

    /* Close the memory dataspace */
    if(H5Sclose(mem_sid) < 0)
        return -1;

    /* Close the datatype */
    if(H5Tclose(tid) < 0)
        return -1;

    /* Emit informational message */
    if(verbose)
        fprintf(stderr, "Closing datasets\n");

    /* Close the datasets */
    for(u = 0; u < NLEVELS; u++)
        for(v = 0; v < symbol_count[u]; v++)
            if(H5Dclose(symbol_info[u][v].dsid) < 0)
                return -1;

    return 0;
}