void hdf5_h5l_copy(value src_loc_v, value src_name_v, value dest_loc_v, value lcpl_v,
value lapl_v, value dest_name_v)
{
CAMLparam5(src_loc_v, src_name_v, dest_loc_v, lcpl_v, lapl_v);
CAMLxparam1(dest_name_v);
raise_if_fail(H5Lcopy(Hid_val(src_loc_v), String_val(src_name_v), Hid_val(dest_loc_v),
String_val(dest_name_v), H5P_opt_val(lcpl_v), H5P_opt_val(lapl_v)));
CAMLreturn0;
}
/*
* Class: hdf_hdf5lib_H5
* Method: H5Lcopy
* Signature: (JLjava/lang/String;JLjava/lang/String;JJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Lcopy
(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, jlong dst_loc_id,
jstring dst_name, jlong create_id, jlong access_id)
{
herr_t status = -1;
const char *lCurName;
const char *lDstName;
PIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
if (lCurName != NULL && lDstName != NULL) {
status = H5Lcopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
UNPIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
if (status < 0)
h5libraryError(env);
}
} /* end Java_hdf_hdf5lib_H5_H5Lcopy */
int
main (int argc, const char *argv[])
{
hid_t fid_src = -1;
hid_t fid_dst = -1;
unsigned flag = 0;
unsigned verbose = 0;
unsigned parents = 0;
hid_t ocpl_id = (-1); /* Object copy property list */
hid_t lcpl_id = (-1); /* Link creation property list */
int opt;
int li_ret;
h5tool_link_info_t linkinfo;
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
/* initialize h5tools lib */
h5tools_init();
/* init linkinfo struct */
HDmemset(&linkinfo, 0, sizeof(h5tool_link_info_t));
/* Check for no command line parameters */
if(argc == 1)
{
usage();
leave(EXIT_FAILURE);
} /* end if */
/* parse command line options */
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF)
{
switch ((char)opt)
{
case 'd':
oname_dst = HDstrdup(opt_arg);
break;
case 'f':
/* validate flag */
if (parse_flag(opt_arg,&flag)<0)
{
usage();
leave(EXIT_FAILURE);
}
str_flag = HDstrdup(opt_arg);
break;
case 'h':
usage();
leave(EXIT_SUCCESS);
break;
case 'i':
fname_src = HDstrdup(opt_arg);
break;
case 'o':
fname_dst = HDstrdup(opt_arg);
break;
case 'p':
parents = 1;
break;
case 's':
oname_src = HDstrdup(opt_arg);
break;
case 'V':
print_version(h5tools_getprogname());
leave(EXIT_SUCCESS);
break;
case 'v':
verbose = 1;
break;
default:
usage();
leave(EXIT_FAILURE);
}
} /* end of while */
/*-------------------------------------------------------------------------
* check for missing file/object names
*-------------------------------------------------------------------------*/
if (fname_src==NULL)
{
error_msg("Input file name missing\n");
usage();
leave(EXIT_FAILURE);
}
if (fname_dst==NULL)
{
error_msg("Output file name missing\n");
usage();
leave(EXIT_FAILURE);
}
if (oname_src==NULL)
{
error_msg("Source object name missing\n");
usage();
leave(EXIT_FAILURE);
}
if (oname_dst==NULL)
{
error_msg("Destination object name missing\n");
usage();
leave(EXIT_FAILURE);
}
/*-------------------------------------------------------------------------
* open output file
*-------------------------------------------------------------------------*/
/* Attempt to open an existing HDF5 file first. Need to open the dst file
before the src file just in case that the dst and src are the same file
*/
fid_dst = h5tools_fopen(fname_dst, H5F_ACC_RDWR, H5P_DEFAULT, NULL, NULL, 0);
/*-------------------------------------------------------------------------
* open input file
*-------------------------------------------------------------------------*/
fid_src = h5tools_fopen(fname_src, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, 0);
/*-------------------------------------------------------------------------
* test for error in opening input file
*-------------------------------------------------------------------------*/
if (fid_src==-1)
{
error_msg("Could not open input file <%s>...Exiting\n", fname_src);
leave(EXIT_FAILURE);
}
/*-------------------------------------------------------------------------
* create an output file when failed to open it
*-------------------------------------------------------------------------*/
/* If we couldn't open an existing file, try creating file */
/* (use "EXCL" instead of "TRUNC", so we don't blow away existing non-HDF5 file) */
if(fid_dst < 0)
fid_dst = H5Fcreate(fname_dst, H5F_ACC_EXCL, H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------------------------------------------------------
* test for error in opening output file
*-------------------------------------------------------------------------*/
if (fid_dst==-1)
{
error_msg("Could not open output file <%s>...Exiting\n", fname_dst);
leave(EXIT_FAILURE);
}
/*-------------------------------------------------------------------------
* print some info
*-------------------------------------------------------------------------*/
if (verbose)
{
printf("Copying file <%s> and object <%s> to file <%s> and object <%s>\n",
fname_src, oname_src, fname_dst, oname_dst);
if (flag) {
HDassert(str_flag);
printf("Using %s flag\n", str_flag);
}
}
/*-------------------------------------------------------------------------
* create property lists for copy
*-------------------------------------------------------------------------*/
/* create property to pass copy options */
if ( (ocpl_id = H5Pcreate(H5P_OBJECT_COPY)) < 0)
goto error;
/* set options for object copy */
if (flag)
{
if ( H5Pset_copy_object(ocpl_id, flag) < 0)
goto error;
}
/* Create link creation property list */
if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) {
error_msg("Could not create link creation property list\n");
goto error;
} /* end if */
/* Check for creating intermediate groups */
if(parents) {
/* Set the intermediate group creation property */
if(H5Pset_create_intermediate_group(lcpl_id, 1) < 0) {
error_msg("Could not set property for creating parent groups\n");
goto error;
} /* end if */
/* Display some output if requested */
if(verbose)
printf("%s: Creating parent groups\n", h5tools_getprogname());
} /* end if */
else /* error, if parent groups doesn't already exist in destination file */
{
size_t i, len;
len = HDstrlen(oname_dst);
/* check if all the parents groups exist. skip root group */
for (i = 1; i < len; i++)
{
if ('/'==oname_dst[i])
{
char *str_ptr;
str_ptr = (char *)HDcalloc(i + 1, sizeof(char));
HDstrncpy(str_ptr, oname_dst, i);
str_ptr[i]='\0';
if (H5Lexists(fid_dst, str_ptr, H5P_DEFAULT) <= 0)
{
error_msg("group <%s> doesn't exist. Use -p to create parent groups.\n", str_ptr);
HDfree(str_ptr);
goto error;
}
HDfree(str_ptr);
}
}
}
/*-------------------------------------------------------------------------
* do the copy
*-------------------------------------------------------------------------*/
if(verbose)
linkinfo.opt.msg_mode = 1;
li_ret = H5tools_get_symlink_info(fid_src, oname_src, &linkinfo, 1);
if (li_ret == 0) /* dangling link */
{
if(H5Lcopy(fid_src, oname_src,
fid_dst, oname_dst,
H5P_DEFAULT, H5P_DEFAULT) < 0)
goto error;
}
else /* valid link */
{
if (H5Ocopy(fid_src, /* Source file or group identifier */
oname_src, /* Name of the source object to be copied */
fid_dst, /* Destination file or group identifier */
oname_dst, /* Name of the destination object */
ocpl_id, /* Object copy property list */
lcpl_id)<0) /* Link creation property list */
goto error;
}
/* free link info path */
if (linkinfo.trg_path)
HDfree(linkinfo.trg_path);
/* close propertis */
if(H5Pclose(ocpl_id)<0)
goto error;
if(H5Pclose(lcpl_id)<0)
goto error;
/* close files */
if (H5Fclose(fid_src)<0)
goto error;
if (H5Fclose(fid_dst)<0)
goto error;
leave(EXIT_SUCCESS);
error:
printf("Error in copy...Exiting\n");
/* free link info path */
if (linkinfo.trg_path)
HDfree(linkinfo.trg_path);
H5E_BEGIN_TRY {
H5Pclose(ocpl_id);
H5Pclose(lcpl_id);
H5Fclose(fid_src);
H5Fclose(fid_dst);
} H5E_END_TRY;
leave(EXIT_FAILURE);
}
