/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
manager_t* managerPtr;
client_t** clients;
TIMER_T start;
TIMER_T stop;
/* Initialization */
parseArgs(argc, (char** const)argv);
SIM_GET_NUM_CPU(global_params[PARAM_CLIENTS]);
managerPtr = initializeManager();
assert(managerPtr != NULL);
clients = initializeClients(managerPtr);
assert(clients != NULL);
long numThread = global_params[PARAM_CLIENTS];
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
/* Run transactions */
printf("Running clients... ");
fflush(stdout);
GOTO_SIM();
TIMER_READ(start);
#ifdef OTM
#pragma omp parallel
{
client_run(clients);
}
#else
thread_start(client_run, (void*)clients);
#endif
TIMER_READ(stop);
GOTO_REAL();
puts("done.");
printf("Time = %0.6lf\n",
TIMER_DIFF_SECONDS(start, stop));
fflush(stdout);
checkTables(managerPtr);
/* Clean up */
printf("Deallocating memory... ");
fflush(stdout);
freeClients(clients);
/*
* TODO: The contents of the manager's table need to be deallocated.
*/
manager_free(managerPtr);
puts("done.");
fflush(stdout);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
GOTO_REAL();
SETUP_NUMBER_TASKS(6);
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
SIM_GET_NUM_CPU(global_numThread);
TM_STARTUP(global_numThread, 0);
P_MEMORY_STARTUP(global_numThread);
SETUP_NUMBER_THREADS(global_numThread);
thread_startup(global_numThread);
int repeat = global_repeats;
double time_total = 0.0;
double energy_total = 0.0;
for (; repeat > 0; --repeat) {
global_meshPtr = mesh_alloc();
assert(global_meshPtr);
long initNumElement = mesh_read(global_meshPtr, global_inputPrefix);
global_workHeapPtr = heap_alloc(1, &element_heapCompare);
assert(global_workHeapPtr);
long initNumBadElement = initializeWork(global_workHeapPtr, global_meshPtr);
TIMER_T start;
TIMER_READ(start);
GOTO_SIM();
thread_start(process, NULL);
GOTO_REAL();
TIMER_T stop;
TIMER_READ(stop);
double time_tmp = TIMER_DIFF_SECONDS(start, stop);
PRINT_STATS();
time_total += time_tmp;
}
printf("Time = %0.3lf\n",
time_total);
fflush(stdout);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
MAIN()
{
ARGV_UNUSED;
#ifndef KEIL
if ( argc < 3 )
{
printf("%s <read pipe path> <write pipe path>\n", argv[0]);
return 0;
}
#endif
#if defined ZB_NS_BUILD && defined ZB_SECURITY
if ( argc > 3
&& !strcmp(argv[3], "auth") )
{
g_auth = 1;
}
#endif
/* Init device, load IB values from nvram or set it to default */
#ifndef ZB8051
ZB_INIT("zdo_zed", argv[1], argv[2]);
#else
ZB_INIT("zdo_zed", "2", "2");
#endif
/* set ieee addr */
ZB_IEEE_ADDR_COPY(ZB_PIB_EXTENDED_ADDRESS(), &g_ieee_addr);
#ifndef ZB_NS_BUILD
ZB_UPDATE_LONGMAC();
#endif
#ifdef ZB_SECURITY
/* turn security */
ZB_NIB_SECURITY_LEVEL() = g_auth ? 1 : 0;
#endif
/* become an ED */
ZB_NIB_DEVICE_TYPE() = ZB_NWK_DEVICE_TYPE_ED;
ZB_PIB_RX_ON_WHEN_IDLE() = ZB_TRUE;
if (zdo_dev_start() != RET_OK)
{
TRACE_MSG(TRACE_ERROR, "zdo_dev_start failed", (FMT__0));
}
else
{
zdo_main_loop();
}
TRACE_DEINIT();
MAIN_RETURN(0);
}
MAIN()
{
ARGV_UNUSED;
#ifndef KEIL
if ( argc < 3 )
{
printf("%s <read pipe path> <write pipe path>\n", argv[0]);
return 0;
}
#endif
/* Init device, load IB values from nvram or set it to default */
#ifndef ZB8051
ZB_INIT("zdo_zc", argv[1], argv[2]);
#else
ZB_INIT("zdo_zc", "1", "1");
#endif
/* let's always be coordinator */
ZB_AIB().aps_designated_coordinator = 1;
/* set ieee addr */
ZB_IEEE_ADDR_COPY(ZB_PIB_EXTENDED_ADDRESS(), &g_ieee_addr);
#ifndef ZB_NS_BUILD
ZB_UPDATE_LONGMAC();
#endif
#ifdef ZB_SECURITY
/* turn off security */
ZB_NIB_SECURITY_LEVEL() = 0;
#endif
/* accept only one child */
ZB_NWK().max_children = 3;
/* configure join duration */
ZDO_CTX().conf_attr.permit_join_duration = 10;
if ( zdo_dev_start() != RET_OK )
{
TRACE_MSG(TRACE_ERROR, "zdo_dev_start failed", (FMT__0));
}
else
{
zdo_main_loop();
}
TRACE_DEINIT();
MAIN_RETURN(0);
}
MAIN()
{
ARGV_UNUSED;
#ifndef KEIL
if ( argc < 3 )
{
printf("%s <read pipe path> <write pipe path>\n", argv[0]);
return 0;
}
#endif
/* Init device, load IB values from nvram or set it to default */
#ifndef ZB8051
ZB_INIT("zdo_zed1_", argv[1], argv[2]);
#else
ZB_INIT("zdo_zed1_", "2", "2");
#endif
/* set ieee addr */
ZB_IEEE_ADDR_COPY(ZB_PIB_EXTENDED_ADDRESS(), &g_ieee_addr);
#ifndef ZB_NS_BUILD
ZB_UPDATE_LONGMAC();
#endif
#ifdef ZB_SECURITY
/* turn off security */
ZB_NIB_SECURITY_LEVEL() = 0;
#endif
MAC_ADD_VISIBLE_LONG(g_zr_ieee_addr);
MAC_ADD_INVISIBLE_SHORT(0); /* ignore beacons from ZC */
/* become an ED */
ZB_NIB_DEVICE_TYPE() = ZB_NWK_DEVICE_TYPE_ED;
ZB_PIB_RX_ON_WHEN_IDLE() = ZB_FALSE;
/* configure poll timer */
ZDO_CTX().conf_attr.nwk_indirect_poll_rate = 2*ZB_TIME_ONE_SECOND;
if (zdo_dev_start() != RET_OK)
{
TRACE_MSG(TRACE_ERROR, "zdo_dev_start failed", (FMT__0));
}
else
{
zdo_main_loop();
}
TRACE_DEINIT();
MAIN_RETURN(0);
}
MAIN(argc, argv) {
TIMER_T start;
TIMER_T stop;
GOTO_REAL();
parseArgs(argc, (char** const)argv);
long sz = (long)global_params[PARAM_SIZE];
global_array = (aligned_type_t*) malloc(sz * sizeof(aligned_type_t));
long k = 0;
for (; k < sz; k++) {
global_array[k].value = 0;
}
long numThread = global_params[PARAM_THREADS];
SIM_GET_NUM_CPU(numThread);
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
printf("Running clients... ");
fflush(stdout);
TIMER_READ(start);
GOTO_SIM();
thread_start(client_run, (void*)&numThread);
GOTO_REAL();
TIMER_READ(stop);
puts("done.");
printf("Time = %0.6lf\n", TIMER_DIFF_SECONDS(start, stop));
fflush(stdout);
long i = 0;
long sum = 0;
for (;i < sz; i++) {
sum += global_array[i].value;
// printf("%ld\n", global_array[i].value);
}
if (sum != 0) {
printf("Problem, sum was not zero!: %ld\n", sum);
}
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
MAIN()
{
ARGV_UNUSED;
#ifndef KEIL
if ( argc < 3 )
{
printf("%s <read pipe path> <write pipe path>\n", argv[0]);
return 0;
}
#endif
/* Init device, load IB values from nvram or set it to default */
#ifndef ZB8051
ZB_INIT("zdo_zr1", argv[1], argv[2]);
#else
ZB_INIT("zdo_zr1", "2", "2");
#endif
/* set ieee addr */
ZB_IEEE_ADDR_COPY(ZB_PIB_EXTENDED_ADDRESS(), &g_ieee_addr);
/* join as a router */
ZB_NIB_DEVICE_TYPE() = ZB_NWK_DEVICE_TYPE_ROUTER;
ZB_NWK().max_children = 0;
#ifndef ZB_NS_BUILD
ZB_UPDATE_LONGMAC();
ZB_UPDATE_PAN_ID();
#endif
#ifdef ZB_SECURITY
/* turn off security */
ZB_NIB_SECURITY_LEVEL() = 0;
#endif
if (zdo_dev_start() != RET_OK)
{
TRACE_MSG(TRACE_ERROR, "zdo_dev_start failed", (FMT__0));
}
else
{
zdo_main_loop();
}
TRACE_DEINIT();
MAIN_RETURN(0);
}
MAIN()
{
ARGV_UNUSED;
#ifndef KEIL
if ( argc < 3 )
{
printf("%s <read pipe path> <write pipe path>\n", argv[0]);
return 0;
}
#endif
/* Init device, load IB values from nvram or set it to default */
#ifndef ZB8051
ZB_INIT("zdo_zc", argv[1], argv[2]);
#else
ZB_INIT("zdo_zc", "1", "1");
#endif
/* let's always be coordinator */
ZB_AIB().aps_designated_coordinator = 1;
MAC_PIB().mac_pan_id = 0x1aaa;
/* set ieee addr */
ZB_IEEE_ADDR_COPY(ZB_PIB_EXTENDED_ADDRESS(), &g_ieee_addr);
#ifndef ZB_NS_BUILD
ZB_UPDATE_LONGMAC();
ZB_UPDATE_PAN_ID();
#endif
#ifdef ZB_SECURITY
/* turn off security */
ZB_NIB_SECURITY_LEVEL() = 0;
#endif
if ( zdo_dev_start() != RET_OK )
{
TRACE_MSG(TRACE_ERROR, "zdo_dev_start failed", (FMT__0));
}
else
{
zdo_main_loop();
}
TRACE_DEINIT();
MAIN_RETURN(0);
}
MAIN()
{
ARGV_UNUSED;
#ifndef KEIL
if ( argc < 3 )
{
printf("%s <read pipe path> <write pipe path>\n", argv[0]);
return 0;
}
#endif
/* Init device, load IB values from nvram or set it to default */
#ifndef ZB8051
ZB_INIT("zdo_zr1", argv[1], argv[2]);
#else
ZB_INIT("zdo_zr1", "2", "2");
#endif
ZB_IEEE_ADDR_COPY(ZB_PIB_EXTENDED_ADDRESS(), &g_ieee_addr);
#ifndef ZB_NS_BUILD
ZB_UPDATE_LONGMAC();
ZB_UPDATE_PAN_ID();
#endif
#ifdef ZB_SECURITY
ZG->nwk.nib.security_level = 0;
#endif
if (zdo_dev_start() != RET_OK)
{
TRACE_MSG(TRACE_ERROR, "zdo_dev_start failed", (FMT__0));
}
else
{
zdo_main_loop();
}
TRACE_DEINIT();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
long numThread = global_params[PARAM_THREAD];
SIM_GET_NUM_CPU(numThread);
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
maze_t* mazePtr = maze_alloc();
assert(mazePtr);
long numPathToRoute = maze_read(mazePtr, global_inputFile);
router_t* routerPtr = router_alloc(global_params[PARAM_XCOST],
global_params[PARAM_YCOST],
global_params[PARAM_ZCOST],
global_params[PARAM_BENDCOST]);
assert(routerPtr);
list_t* pathVectorListPtr = list_alloc(NULL);
assert(pathVectorListPtr);
/*
* Run transactions
*/
router_solve_arg_t routerArg = {routerPtr, mazePtr, pathVectorListPtr};
// NB: Since ASF/PTLSim "REAL" is native execution, and since we are using
// wallclock time, we want to be sure we read time inside the
// simulator, or else we report native cycles spent on the benchmark
// instead of simulator cycles.
GOTO_SIM();
TIMER_T startTime;
TIMER_READ(startTime);
#ifdef OTM
#pragma omp parallel
{
router_solve((void *)&routerArg);
}
#else
thread_start(router_solve, (void*)&routerArg);
#endif
TIMER_T stopTime;
TIMER_READ(stopTime);
// NB: As above, timer reads must be done inside of the simulated region
// for PTLSim/ASF
GOTO_REAL();
long numPathRouted = 0;
list_iter_t it;
list_iter_reset(&it, pathVectorListPtr);
while (list_iter_hasNext(&it, pathVectorListPtr)) {
vector_t* pathVectorPtr = (vector_t*)list_iter_next(&it, pathVectorListPtr);
numPathRouted += vector_getSize(pathVectorPtr);
}
printf("Paths routed = %li\n", numPathRouted);
printf("Elapsed time = %f seconds\n", TIMER_DIFF_SECONDS(startTime, stopTime));
/*
* Check solution and clean up
*/
assert(numPathRouted <= numPathToRoute);
bool status = maze_checkPaths(mazePtr, pathVectorListPtr, global_doPrint);
assert(status);
puts("Verification passed.");
maze_free(mazePtr);
router_free(routerPtr);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
GOTO_REAL();
/*
* Initialization
*/
SETUP_NUMBER_TASKS(3);
parseArgs(argc, (char** const)argv);
long numThread = global_params[PARAM_THREAD];
SETUP_NUMBER_THREADS(numThread);
SIM_GET_NUM_CPU(numThread);
TM_STARTUP(numThread, 0);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
long percentAttack = global_params[PARAM_ATTACK];
long maxDataLength = global_params[PARAM_LENGTH];
long numFlow = global_params[PARAM_NUM];
long randomSeed = global_params[PARAM_SEED];
/* printf("Percent attack = %li\n", percentAttack);
printf("Max data length = %li\n", maxDataLength);
printf("Num flow = %li\n", numFlow);
printf("Random seed = %li\n", randomSeed); */
double time_total = 0.0;
int repeats = global_params[PARAM_REPEAT];
for (; repeats > 0; --repeats) {
dictionary_t* dictionaryPtr = dictionary_alloc();
assert(dictionaryPtr);
stream_t* streamPtr = stream_alloc(percentAttack);
assert(streamPtr);
long numAttack = stream_generate(streamPtr,
dictionaryPtr,
numFlow,
randomSeed,
maxDataLength);
// printf("Num attack = %li\n", numAttack);
decoder_t* decoderPtr = decoder_alloc();
assert(decoderPtr);
vector_t** errorVectors = (vector_t**)malloc(numThread * sizeof(vector_t*));
assert(errorVectors);
long i;
for (i = 0; i < numThread; i++) {
vector_t* errorVectorPtr = vector_alloc(numFlow);
assert(errorVectorPtr);
errorVectors[i] = errorVectorPtr;
}
arg_t arg;
arg.streamPtr = streamPtr;
arg.decoderPtr = decoderPtr;
arg.errorVectors = errorVectors;
/*
* Run transactions
*/
TIMER_T startTime;
TIMER_READ(startTime);
tm_time_t start_clock=TM_TIMER_READ();
GOTO_SIM();
thread_start(processPackets, (void*)&arg);
GOTO_REAL();
TIMER_T stopTime;
tm_time_t end_clock=TM_TIMER_READ();
TIMER_READ(stopTime);
double time_tmp = TIMER_DIFF_SECONDS(startTime, stopTime);
time_total += time_tmp;
PRINT_STATS();
PRINT_CLOCK_THROUGHPUT(end_clock-start_clock);
/*
* Check solution
*/
long numFound = 0;
for (i = 0; i < numThread; i++) {
vector_t* errorVectorPtr = errorVectors[i];
long e;
long numError = vector_getSize(errorVectorPtr);
numFound += numError;
for (e = 0; e < numError; e++) {
long flowId = (long)vector_at(errorVectorPtr, e);
bool_t status = stream_isAttack(streamPtr, flowId);
assert(status);
}
}
// printf("Num found = %li\n", numFound);
assert(numFound == numAttack);
/*
* Clean up
*/
for (i = 0; i < numThread; i++) {
vector_free(errorVectors[i]);
}
free(errorVectors);
decoder_free(decoderPtr);
stream_free(streamPtr);
dictionary_free(dictionaryPtr);
}
printf("Time = %f\n", time_total);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
char exitmsg[1024];
GOTO_REAL();
load_syncchar_map("sync_char.map.yada");
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
sprintf(exitmsg, "END BENCHMARK %s-parallel-phase\n", argv[0]);
SIM_GET_NUM_CPU(global_numThread);
TM_STARTUP(global_numThread);
P_MEMORY_STARTUP(global_numThread);
thread_startup(global_numThread);
global_meshPtr = mesh_alloc();
assert(global_meshPtr);
printf("Angle constraint = %lf\n", global_angleConstraint);
printf("Reading input... ");
long initNumElement = mesh_read(global_meshPtr, global_inputPrefix);
puts("done.");
global_workHeapPtr = heap_alloc(1, &element_heapCompare);
assert(global_workHeapPtr);
long initNumBadElement = initializeWork(global_workHeapPtr, global_meshPtr);
printf("Initial number of mesh elements = %li\n", initNumElement);
printf("Initial number of bad elements = %li\n", initNumBadElement);
printf("Starting triangulation...");
fflush(stdout);
/*
* Run benchmark
*/
TIMER_T start;
TIMER_READ(start);
OSA_PRINT("entering parallel phase\n",0);
START_INSTRUMENTATION();
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
process();
}
#else
thread_start(process, NULL);
#endif
GOTO_REAL();
OSA_PRINT("exiting parallel phase\n",0);
OSA_PRINT(exitmsg,0);
STOP_INSTRUMENTATION();
TIMER_T stop;
TIMER_READ(stop)
puts(" done.");
printf("Elapsed time = %0.3lf\n",
TIMER_DIFF_SECONDS(start, stop));
fflush(stdout);
/*
* Check solution
*/
long finalNumElement = initNumElement + global_totalNumAdded;
printf("Final mesh size = %li\n", finalNumElement);
printf("Number of elements processed = %li\n", global_numProcess);
fflush(stdout);
#if 0
bool_t isSuccess = mesh_check(global_meshPtr, finalNumElement);
#else
bool_t isSuccess = TRUE;
#endif
printf("Final mesh is %s\n", (isSuccess ? "valid." : "INVALID!"));
fflush(stdout);
assert(isSuccess);
/*
* TODO: deallocate mesh and work heap
*/
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN (argc,argv)
{
TIMER_T start;
TIMER_T stop;
GOTO_REAL();
/* Initialization */
parseArgs(argc, (char** const)argv);
SIM_GET_NUM_CPU(global_params[PARAM_THREAD]);
printf("Creating gene and segments... ");
fflush(stdout);
long geneLength = global_params[PARAM_GENE];
long segmentLength = global_params[PARAM_SEGMENT];
long minNumSegment = global_params[PARAM_NUMBER];
long numThread = global_params[PARAM_THREAD];
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
random_t* randomPtr = random_alloc();
assert(randomPtr != NULL);
random_seed(randomPtr, 0);
gene_t* genePtr = gene_alloc(geneLength);
assert( genePtr != NULL);
gene_create(genePtr, randomPtr);
char* gene = genePtr->contents;
segments_t* segmentsPtr = segments_alloc(segmentLength, minNumSegment);
assert(segmentsPtr != NULL);
segments_create(segmentsPtr, genePtr, randomPtr);
sequencer_t* sequencerPtr = sequencer_alloc(geneLength, segmentLength, segmentsPtr);
assert(sequencerPtr != NULL);
puts("done.");
printf("Gene length = %li\n", genePtr->length);
printf("Segment length = %li\n", segmentsPtr->length);
printf("Number segments = %li\n", vector_getSize(segmentsPtr->contentsPtr));
fflush(stdout);
/* Benchmark */
printf("Sequencing gene... ");
fflush(stdout);
TIMER_READ(start);
GOTO_SIM();
thread_startup(numThread, sequencer_run, (void*)sequencerPtr);
thread_start();
GOTO_REAL();
TIMER_READ(stop);
puts("done.");
printf("Time = %lf\n", TIMER_DIFF_SECONDS(start, stop));
fflush(stdout);
/* Check result */
{
char* sequence = sequencerPtr->sequence;
int result = strcmp(gene, sequence);
printf("Sequence matches gene: %s\n", (result ? "no" : "yes"));
if (result) {
printf("gene = %s\n", gene);
printf("sequence = %s\n", sequence);
}
fflush(stdout);
assert(strlen(sequence) >= strlen(gene));
}
/* Clean up */
printf("Deallocating memory... ");
fflush(stdout);
sequencer_free(sequencerPtr);
segments_free(segmentsPtr);
gene_free(genePtr);
random_free(randomPtr);
puts("done.");
fflush(stdout);
al_dump(&sequencerLock);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
GOTO_REAL();
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
long numThread = global_params[PARAM_THREAD];
long numVar = global_params[PARAM_VAR];
long numRecord = global_params[PARAM_RECORD];
long randomSeed = global_params[PARAM_SEED];
long maxNumParent = global_params[PARAM_NUMBER];
long percentParent = global_params[PARAM_PERCENT];
global_insertPenalty = global_params[PARAM_INSERT];
global_maxNumEdgeLearned = global_params[PARAM_EDGE];
SIM_GET_NUM_CPU(numThread);
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
printf("Random seed = %li\n", randomSeed);
printf("Number of vars = %li\n", numVar);
printf("Number of records = %li\n", numRecord);
printf("Max num parents = %li\n", maxNumParent);
printf("%% chance of parent = %li\n", percentParent);
printf("Insert penalty = %li\n", global_insertPenalty);
printf("Max num edge learned / var = %li\n", global_maxNumEdgeLearned);
printf("Operation quality factor = %f\n", global_operationQualityFactor);
fflush(stdout);
/*
* Generate data
*/
printf("Generating data... ");
fflush(stdout);
random_t* randomPtr = random_alloc();
assert(randomPtr);
random_seed(randomPtr, randomSeed);
data_t* dataPtr = data_alloc(numVar, numRecord, randomPtr);
assert(dataPtr);
net_t* netPtr = data_generate(dataPtr, -1, maxNumParent, percentParent);
puts("done.");
fflush(stdout);
/*
* Generate adtree
*/
adtree_t* adtreePtr = adtree_alloc();
assert(adtreePtr);
printf("Generating adtree... ");
fflush(stdout);
TIMER_T adtreeStartTime;
TIMER_READ(adtreeStartTime);
adtree_make(adtreePtr, dataPtr);
TIMER_T adtreeStopTime;
TIMER_READ(adtreeStopTime);
puts("done.");
fflush(stdout);
printf("Adtree time = %f\n",
TIMER_DIFF_SECONDS(adtreeStartTime, adtreeStopTime));
fflush(stdout);
/*
* Score original network
*/
float actualScore = score(netPtr, adtreePtr);
net_free(netPtr);
/*
* Learn structure of Bayesian network
*/
learner_t* learnerPtr = learner_alloc(dataPtr, adtreePtr, numThread);
assert(learnerPtr);
data_free(dataPtr); /* save memory */
printf("Learning structure...");
fflush(stdout);
TIMER_T learnStartTime;
TIMER_READ(learnStartTime);
GOTO_SIM();
learner_run(learnerPtr);
GOTO_REAL();
TIMER_T learnStopTime;
TIMER_READ(learnStopTime);
puts("done.");
fflush(stdout);
printf("Time = %f\n",
TIMER_DIFF_SECONDS(learnStartTime, learnStopTime));
fflush(stdout);
/*
* Check solution
*/
bool_t status = net_isCycle(learnerPtr->netPtr);
assert(!status);
#ifndef SIMULATOR
float learnScore = learner_score(learnerPtr);
printf("Learn score = %f\n", learnScore);
#endif
printf("Actual score = %f\n", actualScore);
/*
* Clean up
*/
fflush(stdout);
random_free(randomPtr);
#ifndef SIMULATOR
adtree_free(adtreePtr);
# if 0
learner_free(learnerPtr);
# endif
#endif
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
int i;
//FILE * wfile;
# ifdef SIMULATOR
printf("SIMULATOR is defined\n");
# else
printf("SIMULATOR is not defined\n");
# endif /* !SIMULATOR */
#if defined(STM)
printf("STM is defined\n");
# else
printf("STM is not defined\n");
# endif /* !SIMULATOR */
GOTO_REAL();
/*
* Initialization
*/
if(argc !=3)
printf("needs two input arguments, \"max_count, num_threads\",argc=%d\n\n", argc);
max_count = atoi(argv[1]);
long numThread = atoi(argv[2]);
if(numThread > MAX_NUM_OF_THREADS)
printf("num_threads can be at most %d\n\n", MAX_NUM_OF_THREADS);
//else
//printf("numThread = %d\n\n", (int)numThread);
for(i=0; i<MAX_NUM_OF_THREADS; i++)
threads_arg[i]=i;
SIM_GET_NUM_CPU(numThread);
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
/*
* Run transactions
*/
//router_solve_arg_t routerArg = {routerPtr, mazePtr, pathVectorListPtr};
TIMER_T startTime;
TIMER_READ(startTime);
GOTO_SIM();
thread_start(func_count, (void*)threads_arg);
GOTO_REAL();
TIMER_T stopTime;
TIMER_READ(stopTime);
//printf("Elapsed time = %f seconds\n", TIMER_DIFF_SECONDS(startTime, stopTime));
/*
* Check solution and clean up
*/
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
//wfile = fopen ("exe_time.txt","a");
//fprintf(wfile, "Elapsed time = %f, Aborts/starts=%f, Aborts=%f, starts=%f\n", TIMER_DIFF_SECONDS(startTime, stopTime), (float)((float)(AbortTally*100)/((float)StartTally)), (float)AbortTally, (float)StartTally);
//fclose(wfile);
//printf("final value of counter=%d\n\n", my_counter);
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
int max_nclusters = 13;
int min_nclusters = 4;
char* filename = 0;
float* buf;
float** attributes;
float** cluster_centres = NULL;
int i;
int j;
int best_nclusters;
int* cluster_assign;
int numAttributes;
int numObjects;
int use_zscore_transform = 1;
char* line;
int isBinaryFile = 0;
int nloops;
int len;
int nthreads;
float threshold = 0.001;
int opt;
GOTO_REAL();
line = (char*)malloc(MAX_LINE_LENGTH); /* reserve memory line */
nthreads = 1;
while ((opt = getopt(argc,(char**)argv,"p:i:m:n:t:bz")) != EOF) {
switch (opt) {
case 'i': filename = optarg;
break;
case 'b': isBinaryFile = 1;
break;
case 't': threshold = atof(optarg);
break;
case 'm': max_nclusters = atoi(optarg);
break;
case 'n': min_nclusters = atoi(optarg);
break;
case 'z': use_zscore_transform = 0;
break;
case 'p': nthreads = atoi(optarg);
break;
case '?': usage((char*)argv[0]);
break;
default: usage((char*)argv[0]);
break;
}
}
if (filename == 0) {
usage((char*)argv[0]);
}
if (max_nclusters < min_nclusters) {
fprintf(stderr, "Error: max_clusters must be >= min_clusters\n");
usage((char*)argv[0]);
}
SIM_GET_NUM_CPU(nthreads);
numAttributes = 0;
numObjects = 0;
/*
* From the input file, get the numAttributes and numObjects
*/
if (isBinaryFile) {
int infile;
if ((infile = open(filename, O_RDONLY, "0600")) == -1) {
fprintf(stderr, "Error: no such file (%s)\n", filename);
exit(1);
}
read(infile, &numObjects, sizeof(int));
read(infile, &numAttributes, sizeof(int));
/* Allocate space for attributes[] and read attributes of all objects */
buf = (float*)malloc(numObjects * numAttributes * sizeof(float));
assert(buf);
attributes = (float**)malloc(numObjects * sizeof(float*));
assert(attributes);
attributes[0] = (float*)malloc(numObjects * numAttributes * sizeof(float));
assert(attributes[0]);
for (i = 1; i < numObjects; i++) {
attributes[i] = attributes[i-1] + numAttributes;
}
read(infile, buf, (numObjects * numAttributes * sizeof(float)));
close(infile);
} else {
FILE *infile;
if ((infile = fopen(filename, "r")) == NULL) {
fprintf(stderr, "Error: no such file (%s)\n", filename);
exit(1);
}
while (fgets(line, MAX_LINE_LENGTH, infile) != NULL) {
if (strtok(line, " \t\n") != 0) {
numObjects++;
}
}
rewind(infile);
while (fgets(line, MAX_LINE_LENGTH, infile) != NULL) {
if (strtok(line, " \t\n") != 0) {
/* Ignore the id (first attribute): numAttributes = 1; */
while (strtok(NULL, " ,\t\n") != NULL) {
numAttributes++;
}
break;
}
}
/* Allocate space for attributes[] and read attributes of all objects */
buf = (float*)malloc(numObjects * numAttributes * sizeof(float));
assert(buf);
attributes = (float**)malloc(numObjects * sizeof(float*));
assert(attributes);
attributes[0] = (float*)malloc(numObjects * numAttributes * sizeof(float));
assert(attributes[0]);
for (i = 1; i < numObjects; i++) {
attributes[i] = attributes[i-1] + numAttributes;
}
rewind(infile);
i = 0;
while (fgets(line, MAX_LINE_LENGTH, infile) != NULL) {
if (strtok(line, " \t\n") == NULL) {
continue;
}
for (j = 0; j < numAttributes; j++) {
buf[i] = atof(strtok(NULL, " ,\t\n"));
i++;
}
}
fclose(infile);
}
TM_STARTUP(nthreads);
thread_startup(nthreads);
/*
* The core of the clustering
*/
cluster_assign = (int*)malloc(numObjects * sizeof(int));
assert(cluster_assign);
nloops = 1;
len = max_nclusters - min_nclusters + 1;
#ifdef STM_ENERGY_MONITOR
startEnergy();
#endif /* STM_ENERGY_MONITOR */
for (i = 0; i < nloops; i++) {
/*
* Since zscore transform may perform in cluster() which modifies the
* contents of attributes[][], we need to re-store the originals
*/
memcpy(attributes[0], buf, (numObjects * numAttributes * sizeof(float)));
cluster_centres = NULL;
cluster_exec(nthreads,
numObjects,
numAttributes,
attributes, /* [numObjects][numAttributes] */
use_zscore_transform, /* 0 or 1 */
min_nclusters, /* pre-define range from min to max */
max_nclusters,
threshold,
&best_nclusters, /* return: number between min and max */
&cluster_centres, /* return: [best_nclusters][numAttributes] */
cluster_assign); /* return: [numObjects] cluster id for each object */
}
#ifdef GNUPLOT_OUTPUT
{
FILE** fptr;
char outFileName[1024];
fptr = (FILE**)malloc(best_nclusters * sizeof(FILE*));
for (i = 0; i < best_nclusters; i++) {
sprintf(outFileName, "group.%d", i);
fptr[i] = fopen(outFileName, "w");
}
for (i = 0; i < numObjects; i++) {
fprintf(fptr[cluster_assign[i]],
"%6.4f %6.4f\n",
attributes[i][0],
attributes[i][1]);
}
for (i = 0; i < best_nclusters; i++) {
fclose(fptr[i]);
}
free(fptr);
}
#endif /* GNUPLOT_OUTPUT */
#ifdef OUTPUT_TO_FILE
{
/* Output: the coordinates of the cluster centres */
FILE* cluster_centre_file;
FILE* clustering_file;
char outFileName[1024];
sprintf(outFileName, "%s.cluster_centres", filename);
cluster_centre_file = fopen(outFileName, "w");
for (i = 0; i < best_nclusters; i++) {
fprintf(cluster_centre_file, "%d ", i);
for (j = 0; j < numAttributes; j++) {
fprintf(cluster_centre_file, "%f ", cluster_centres[i][j]);
}
fprintf(cluster_centre_file, "\n");
}
fclose(cluster_centre_file);
/* Output: the closest cluster centre to each of the data points */
sprintf(outFileName, "%s.cluster_assign", filename);
clustering_file = fopen(outFileName, "w");
for (i = 0; i < numObjects; i++) {
fprintf(clustering_file, "%d %d\n", i, cluster_assign[i]);
}
fclose(clustering_file);
}
#endif /* OUTPUT TO_FILE */
#ifdef OUTPUT_TO_STDOUT
{
/* Output: the coordinates of the cluster centres */
for (i = 0; i < best_nclusters; i++) {
//printf("%d ", i);
for (j = 0; j < numAttributes; j++) {
//printf("%f ", cluster_centres[i][j]);
}
//printf("\n");
}
}
#endif /* OUTPUT TO_STDOUT */
#ifdef STM_ENERGY_MONITOR
float joule=endEnergy();
printf("Threads: %i\tElapsed time: %f Energy: %f",nthreads, global_time, joule);
#else
printf("Threads: %i\tElapsed time: %f", nthreads, global_time);
#endif /* STM_ENERGY_MONITOR */
free(cluster_assign);
free(attributes);
free(cluster_centres[0]);
free(cluster_centres);
free(buf);
TM_SHUTDOWN();
if (getenv("STM_STATS") != NULL) {
unsigned long u;
if (stm_get_global_stats("global_nb_commits", &u) != 0){
printf("\tThroughput: %f\n",u/global_time);
}
}
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN (argc,argv)
{
TIMER_T start;
TIMER_T stop;
/* Initialization */
parseArgs(argc, (char** const)argv);
SIM_GET_NUM_CPU(global_params[PARAM_THREAD]);
printf("Creating gene and segments... ");
fflush(stdout);
long geneLength = global_params[PARAM_GENE];
long segmentLength = global_params[PARAM_SEGMENT];
long minNumSegment = global_params[PARAM_NUMBER];
long numThread = global_params[PARAM_THREAD];
random_t* randomPtr;
gene_t* genePtr;
char* gene;
segments_t* segmentsPtr;
sequencer_t* sequencerPtr;
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
TM_THREAD_ENTER();
// TM_BEGIN();
randomPtr= random_alloc();
assert(randomPtr != NULL);
random_seed(randomPtr, 0);
genePtr = gene_alloc(geneLength);
assert( genePtr != NULL);
gene_create(genePtr, randomPtr);
gene = genePtr->contents;
segmentsPtr = segments_alloc(segmentLength, minNumSegment);
assert(segmentsPtr != NULL);
segments_create(segmentsPtr, genePtr, randomPtr);
sequencerPtr = sequencer_alloc(geneLength, segmentLength, segmentsPtr);
assert(sequencerPtr != NULL);
//TM_END();
thread_startup(numThread);
puts("done.");
printf("Gene length = %li\n", genePtr->length);
printf("Segment length = %li\n", segmentsPtr->length);
printf("Number segments = %li\n", vector_getSize(segmentsPtr->contentsPtr));
fflush(stdout);
/* Benchmark */
printf("Sequencing gene... ");
fflush(stdout);
// NB: Since ASF/PTLSim "REAL" is native execution, and since we are using
// wallclock time, we want to be sure we read time inside the
// simulator, or else we report native cycles spent on the benchmark
// instead of simulator cycles.
GOTO_SIM();
TIMER_READ(start);
#ifdef OTM
#pragma omp parallel
{
sequencer_run(sequencerPtr);
}
#else
thread_start(sequencer_run, (void*)sequencerPtr);
#endif
TIMER_READ(stop);
// NB: As above, timer reads must be done inside of the simulated region
// for PTLSim/ASF
GOTO_REAL();
puts("done.");
printf("Time = %lf\n", TIMER_DIFF_SECONDS(start, stop));
fflush(stdout);
/* Check result */
{
char* sequence;
int result;
//TM_BEGIN();
sequence= sequencerPtr->sequence;
result = strcmp(gene, sequence);
//TM_END();
printf("Sequence matches gene: %s\n", (result ? "no" : "yes"));
if (result) {
printf("gene = %s\n", gene);
printf("sequence = %s\n", sequence);
}
fflush(stdout);
assert(strlen(sequence) >= strlen(gene));
}
/* Clean up */
printf("Deallocating memory... ");
fflush(stdout);
sequencer_free(sequencerPtr);
segments_free(segmentsPtr);
gene_free(genePtr);
random_free(randomPtr);
puts("done.");
fflush(stdout);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
SIM_GET_NUM_CPU(global_numThread);
TM_STARTUP(global_numThread);
P_MEMORY_STARTUP(global_numThread);
thread_startup(global_numThread);
global_meshPtr = mesh_alloc();
assert(global_meshPtr);
printf("Angle constraint = %lf\n", global_angleConstraint);
printf("Reading input... ");
long initNumElement = mesh_read(global_meshPtr, (char*)global_inputPrefix);
puts("done.");
global_workHeapPtr = heap_alloc(1, &yada_heapcompare);
assert(global_workHeapPtr);
long initNumBadElement = initializeWork(global_workHeapPtr, global_meshPtr);
printf("Initial number of mesh elements = %li\n", initNumElement);
printf("Initial number of bad elements = %li\n", initNumBadElement);
printf("Starting triangulation...");
fflush(stdout);
/*
* Run benchmark
*/
// NB: Since ASF/PTLSim "REAL" is native execution, and since we are using
// wallclock time, we want to be sure we read time inside the
// simulator, or else we report native cycles spent on the benchmark
// instead of simulator cycles.
GOTO_SIM();
TIMER_T start;
TIMER_READ(start);
#ifdef OTM
#pragma omp parallel
{
process();
}
#else
thread_start((void(*)(void*))process, NULL);
#endif
TIMER_T stop;
TIMER_READ(stop);
// NB: As above, timer reads must be done inside of the simulated region
// for PTLSim/ASF
GOTO_REAL();
puts(" done.");
printf("Elapsed time = %0.3lf\n",
TIMER_DIFF_SECONDS(start, stop));
fflush(stdout);
/*
* Check solution
*/
long finalNumElement = initNumElement + global_totalNumAdded;
printf("Final mesh size = %li\n", finalNumElement);
printf("Number of elements processed = %li\n", global_numProcess);
fflush(stdout);
#if 1
bool isSuccess = mesh_check(global_meshPtr, finalNumElement);
#else
bool isSuccess = true;
#endif
printf("Final mesh is %s\n", (isSuccess ? "valid." : "INVALID!"));
fflush(stdout);
assert(isSuccess);
/*
* TODO: deallocate mesh and work heap
*/
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
GOTO_REAL();
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
long numThread = global_params[PARAM_THREAD];
SIM_GET_NUM_CPU(numThread);
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
long percentAttack = global_params[PARAM_ATTACK];
long maxDataLength = global_params[PARAM_LENGTH];
long numFlow = global_params[PARAM_NUM];
long randomSeed = global_params[PARAM_SEED];
printf("Percent attack = %li\n", percentAttack);
printf("Max data length = %li\n", maxDataLength);
printf("Num flow = %li\n", numFlow);
printf("Random seed = %li\n", randomSeed);
dictionary_t* dictionaryPtr = dictionary_alloc();
assert(dictionaryPtr);
stream_t* streamPtr = stream_alloc(percentAttack);
assert(streamPtr);
long numAttack = stream_generate(streamPtr,
dictionaryPtr,
numFlow,
randomSeed,
maxDataLength);
printf("Num attack = %li\n", numAttack);
decoder_t* decoderPtr = decoder_alloc();
assert(decoderPtr);
vector_t** errorVectors = (vector_t**)malloc(numThread * sizeof(vector_t*));
assert(errorVectors);
long i;
for (i = 0; i < numThread; i++) {
vector_t* errorVectorPtr = vector_alloc(numFlow);
assert(errorVectorPtr);
errorVectors[i] = errorVectorPtr;
}
arg_t arg;
arg.streamPtr = streamPtr;
arg.decoderPtr = decoderPtr;
arg.errorVectors = errorVectors;
/*
* Run transactions
*/
TIMER_T startTime;
TIMER_READ(startTime);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
processPackets((void*)&arg);
}
#else
thread_start(processPackets, (void*)&arg);
#endif
GOTO_REAL();
TIMER_T stopTime;
TIMER_READ(stopTime);
printf("\nTime = %lf\n", TIMER_DIFF_SECONDS(startTime, stopTime));
/*
* Check solution
*/
/*long numFound = 0;
for (i = 0; i < numThread; i++) {
vector_t* errorVectorPtr = errorVectors[i];
long e;
long numError = vector_getSize(errorVectorPtr);
numFound += numError;
for (e = 0; e < numError; e++) {
long flowId = (long)vector_at(errorVectorPtr, e);
bool_t status = stream_isAttack(streamPtr, flowId);
assert(status);
}
}*/
/*printf("Num found = %li\n", numFound);
assert(numFound == numAttack);*/
/*
* Clean up
*/
for (i = 0; i < numThread; i++) {
vector_free(errorVectors[i]);
}
free(errorVectors);
decoder_free(decoderPtr);
stream_free(streamPtr);
dictionary_free(dictionaryPtr);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
GOTO_REAL();
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
long numThread = global_params[PARAM_THREAD];
SIM_GET_NUM_CPU(numThread);
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
maze_t* mazePtr = maze_alloc();
assert(mazePtr);
long numPathToRoute = maze_read(mazePtr, global_inputFile);
router_t* routerPtr = router_alloc(global_params[PARAM_XCOST],
global_params[PARAM_YCOST],
global_params[PARAM_ZCOST],
global_params[PARAM_BENDCOST]);
assert(routerPtr);
list_t* pathVectorListPtr = list_alloc(NULL);
assert(pathVectorListPtr);
/*
* Run transactions
*/
router_solve_arg_t routerArg = {routerPtr, mazePtr, pathVectorListPtr};
TIMER_T startTime;
TIMER_READ(startTime);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
router_solve((void *)&routerArg);
}
#else
thread_start(router_solve, (void*)&routerArg);
#endif
GOTO_REAL();
TIMER_T stopTime;
TIMER_READ(stopTime);
long numPathRouted = 0;
list_iter_t it;
list_iter_reset(&it, pathVectorListPtr);
while (list_iter_hasNext(&it, pathVectorListPtr)) {
vector_t* pathVectorPtr = (vector_t*)list_iter_next(&it, pathVectorListPtr);
numPathRouted += vector_getSize(pathVectorPtr);
}
printf("Paths routed = %li\n", numPathRouted);
printf("Elapsed time = %f seconds\n", TIMER_DIFF_SECONDS(startTime, stopTime));
/*
* Check solution and clean up
*/
assert(numPathRouted <= numPathToRoute);
bool_t status = maze_checkPaths(mazePtr, pathVectorListPtr, global_doPrint);
assert(status == TRUE);
puts("Verification passed.");
maze_free(mazePtr);
router_free(routerPtr);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
MAIN(argc, argv)
{
GOTO_REAL();
SETUP_NUMBER_TASKS(10);
/*
* Tuple for Scalable Data Generation
* stores startVertex, endVertex, long weight and other info
*/
graphSDG* SDGdata;
/*
* The graph data structure for this benchmark - see defs.h
*/
graph* G;
#ifdef ENABLE_KERNEL2
/*
* Kernel 2
*/
edge* maxIntWtList;
edge* soughtStrWtList;
long maxIntWtListSize;
long soughtStrWtListSize;
#endif /* ENABLE_KERNEL2 */
#ifdef ENABLE_KERNEL3
# ifndef ENABLE_KERNEL2
# error KERNEL3 requires KERNEL2
# endif
/*
* Kernel 3
*/
V* intWtVList = NULL;
V* strWtVList = NULL;
Vl** intWtVLList = NULL;
Vl** strWtVLList = NULL;
Vd* intWtVDList = NULL;
Vd* strWtVDList = NULL;
#endif /* ENABLE_KERNEL3 */
double totalTime = 0.0;
/* -------------------------------------------------------------------------
* Preamble
* -------------------------------------------------------------------------
*/
/*
* User Interface: Configurable parameters, and global program control
*/
getUserParameters(argc, (char** const) argv);
SIM_GET_NUM_CPU(THREADS);
TM_STARTUP(THREADS, 0);
P_MEMORY_STARTUP(THREADS);
SETUP_NUMBER_THREADS(THREADS);
thread_startup(THREADS);
double time_total = 0.0;
int repeat = REPEATS;
for (; repeat > 0; --repeat) {
SDGdata = (graphSDG*)malloc(sizeof(graphSDG));
assert(SDGdata);
genScalData_seq(SDGdata);
G = (graph*)malloc(sizeof(graph));
assert(G);
computeGraph_arg_t computeGraphArgs;
computeGraphArgs.GPtr = G;
computeGraphArgs.SDGdataPtr = SDGdata;
TIMER_T start;
TIMER_READ(start);
GOTO_SIM();
thread_start(computeGraph, (void*)&computeGraphArgs);
GOTO_REAL();
TIMER_T stop;
TIMER_READ(stop);
double time_tmp = TIMER_DIFF_SECONDS(start, stop);
PRINT_STATS();
time_total += time_tmp;
}
totalTime += time_total;
#ifdef ENABLE_KERNEL2
/* -------------------------------------------------------------------------
* Kernel 2 - Find Max weight and sought string
* -------------------------------------------------------------------------
*/
printf("\nKernel 2 - getStartLists() beginning execution...\n");
maxIntWtListSize = 0;
soughtStrWtListSize = 0;
maxIntWtList = (edge*)malloc(sizeof(edge));
assert(maxIntWtList);
soughtStrWtList = (edge*)malloc(sizeof(edge));
assert(soughtStrWtList);
getStartLists_arg_t getStartListsArg;
getStartListsArg.GPtr = G;
getStartListsArg.maxIntWtListPtr = &maxIntWtList;
getStartListsArg.maxIntWtListSize = &maxIntWtListSize;
getStartListsArg.soughtStrWtListPtr = &soughtStrWtList;
getStartListsArg.soughtStrWtListSize = &soughtStrWtListSize;
TIMER_READ(start);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
getStartLists((void*)&getStartListsArg);
}
#else
thread_start(getStartLists, (void*)&getStartListsArg);
#endif
GOTO_REAL();
TIMER_T stop;
TIMER_READ(stop);
time = TIMER_DIFF_SECONDS(start, stop);
totalTime += time;
printf("\n\tgetStartLists() completed execution.\n");
printf("\nTime taken for kernel 2 is %9.6f sec.\n\n", time);
#endif /* ENABLE_KERNEL2 */
#ifdef ENABLE_KERNEL3
/* -------------------------------------------------------------------------
* Kernel 3 - Graph Extraction
* -------------------------------------------------------------------------
*/
printf("\nKernel 3 - findSubGraphs() beginning execution...\n");
if (K3_DS == 0) {
intWtVList = (V*)malloc(G->numVertices * maxIntWtListSize * sizeof(V));
assert(intWtVList);
strWtVList = (V*)malloc(G->numVertices * soughtStrWtListSize * sizeof(V));
assert(strWtVList);
findSubGraphs0_arg_t findSubGraphs0Arg;
findSubGraphs0Arg.GPtr = G;
findSubGraphs0Arg.intWtVList = intWtVList;
findSubGraphs0Arg.strWtVList = strWtVList;
findSubGraphs0Arg.maxIntWtList = maxIntWtList;
findSubGraphs0Arg.maxIntWtListSize = maxIntWtListSize;
findSubGraphs0Arg.soughtStrWtList = soughtStrWtList;
findSubGraphs0Arg.soughtStrWtListSize = soughtStrWtListSize;
TIMER_READ(start);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
findSubGraphs0((void*)&findSubGraphs0Arg);
}
#else
thread_start(findSubGraphs0, (void*)&findSubGraphs0Arg);
#endif
GOTO_REAL();
TIMER_READ(stop);
} else if (K3_DS == 1) {
intWtVLList = (Vl**)malloc(maxIntWtListSize * sizeof(Vl*));
assert(intWtVLList);
strWtVLList = (Vl**)malloc(soughtStrWtListSize * sizeof(Vl*));
assert(strWtVLList);
findSubGraphs1_arg_t findSubGraphs1Arg;
findSubGraphs1Arg.GPtr = G;
findSubGraphs1Arg.intWtVLList = intWtVLList;
findSubGraphs1Arg.strWtVLList = strWtVLList;
findSubGraphs1Arg.maxIntWtList = maxIntWtList;
findSubGraphs1Arg.maxIntWtListSize = maxIntWtListSize;
findSubGraphs1Arg.soughtStrWtList = soughtStrWtList;
findSubGraphs1Arg.soughtStrWtListSize = soughtStrWtListSize;
TIMER_READ(start);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
findSubGraphs1((void*)&findSubGraphs1Arg);
}
#else
thread_start(findSubGraphs1, (void*)&findSubGraphs1Arg);
#endif
GOTO_REAL();
TIMER_READ(stop);
/* Verification
on_one_thread {
for (i=0; i<maxIntWtListSize; i++) {
printf("%ld -- ", i);
currV = intWtVLList[i];
while (currV != NULL) {
printf("[%ld %ld] ", currV->num, currV->depth);
currV = currV->next;
}
printf("\n");
}
for (i=0; i<soughtStrWtListSize; i++) {
printf("%ld -- ", i);
currV = strWtVLList[i];
while (currV != NULL) {
printf("[%ld %ld] ", currV->num, currV->depth);
currV = currV->next;
}
printf("\n");
}
}
*/
} else if (K3_DS == 2) {
intWtVDList = (Vd *) malloc(maxIntWtListSize * sizeof(Vd));
assert(intWtVDList);
strWtVDList = (Vd *) malloc(soughtStrWtListSize * sizeof(Vd));
assert(strWtVDList);
findSubGraphs2_arg_t findSubGraphs2Arg;
findSubGraphs2Arg.GPtr = G;
findSubGraphs2Arg.intWtVDList = intWtVDList;
findSubGraphs2Arg.strWtVDList = strWtVDList;
findSubGraphs2Arg.maxIntWtList = maxIntWtList;
findSubGraphs2Arg.maxIntWtListSize = maxIntWtListSize;
findSubGraphs2Arg.soughtStrWtList = soughtStrWtList;
findSubGraphs2Arg.soughtStrWtListSize = soughtStrWtListSize;
TIMER_READ(start);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
findSubGraphs2((void*)&findSubGraphs2Arg);
}
#else
thread_start(findSubGraphs2, (void*)&findSubGraphs2Arg);
#endif
GOTO_REAL();
TIMER_READ(stop);
/* Verification */
/*
on_one_thread {
printf("\nInt weight sub-graphs \n");
for (i=0; i<maxIntWtListSize; i++) {
printf("%ld -- ", i);
for (j=0; j<intWtVDList[i].numArrays; j++) {
printf("\n [Array %ld] - \n", j);
for (k=0; k<intWtVDList[i].arraySize[j]; k++) {
printf("[%ld %ld] ", intWtVDList[i].vList[j][k].num, intWtVDList[i].vList[j][k].depth);
}
}
printf("\n");
}
printf("\nStr weight sub-graphs \n");
for (i=0; i<soughtStrWtListSize; i++) {
printf("%ld -- ", i);
for (j=0; j<strWtVDList[i].numArrays; j++) {
printf("\n [Array %ld] - \n", j);
for (k=0; k<strWtVDList[i].arraySize[j]; k++) {
printf("[%ld %ld] ", strWtVDList[i].vList[j][k].num, strWtVDList[i].vList[j][k].depth);
}
}
printf("\n");
}
}
*/
} else {
assert(0);
}
time = TIMER_DIFF_SECONDS(start, stop);
totalTime += time;
printf("\n\tfindSubGraphs() completed execution.\n");
printf("\nTime taken for kernel 3 is %9.6f sec.\n\n", time);
#endif /* ENABLE_KERNEL3 */
#ifdef ENABLE_KERNEL4
/* -------------------------------------------------------------------------
* Kernel 4 - Graph Clustering
* -------------------------------------------------------------------------
*/
printf("\nKernel 4 - cutClusters() beginning execution...\n");
TIMER_READ(start);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
cutClusters((void*)G);
}
#else
thread_start(cutClusters, (void*)G);
#endif
GOTO_REAL();
TIMER_READ(stop);
time = TIMER_DIFF_SECONDS(start, stop);
totalTime += time;
printf("\n\tcutClusters() completed execution.\n");
printf("\nTime taken for Kernel 4 is %9.6f sec.\n\n", time);
#endif /* ENABLE_KERNEL4 */
printf("Time = %9.6f \n", totalTime);
/* -------------------------------------------------------------------------
* Cleanup
* -------------------------------------------------------------------------
*/
P_FREE(G->outDegree);
P_FREE(G->outVertexIndex);
P_FREE(G->outVertexList);
P_FREE(G->paralEdgeIndex);
P_FREE(G->inDegree);
P_FREE(G->inVertexIndex);
P_FREE(G->inVertexList);
P_FREE(G->intWeight);
P_FREE(G->strWeight);
#ifdef ENABLE_KERNEL3
LONGINT_T i;
LONGINT_T j;
Vl* currV;
Vl* tempV;
if (K3_DS == 0) {
P_FREE(strWtVList);
P_FREE(intWtVList);
}
if (K3_DS == 1) {
for (i = 0; i < maxIntWtListSize; i++) {
currV = intWtVLList[i];
while (currV != NULL) {
tempV = currV->next;
P_FREE(currV);
currV = tempV;
}
}
for (i = 0; i < soughtStrWtListSize; i++) {
currV = strWtVLList[i];
while (currV != NULL) {
tempV = currV->next;
P_FREE(currV);
currV = tempV;
}
}
P_FREE(strWtVLList);
P_FREE(intWtVLList);
}
if (K3_DS == 2) {
for (i = 0; i < maxIntWtListSize; i++) {
for (j = 0; j < intWtVDList[i].numArrays; j++) {
P_FREE(intWtVDList[i].vList[j]);
}
P_FREE(intWtVDList[i].vList);
P_FREE(intWtVDList[i].arraySize);
}
for (i = 0; i < soughtStrWtListSize; i++) {
for (j = 0; j < strWtVDList[i].numArrays; j++) {
P_FREE(strWtVDList[i].vList[j]);
}
P_FREE(strWtVDList[i].vList);
P_FREE(strWtVDList[i].arraySize);
}
P_FREE(strWtVDList);
P_FREE(intWtVDList);
}
P_FREE(soughtStrWtList);
P_FREE(maxIntWtList);
#endif /* ENABLE_KERNEL2 */
P_FREE(SOUGHT_STRING);
P_FREE(G);
P_FREE(SDGdata);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}