NGS_String* SRA_StatisticsGetAsString ( const SRA_Statistics * self, ctx_t ctx, const char * path )
{
FUNC_ENTRY ( ctx, rcSRA, rcDatabase, rcAccessing );
assert ( self );
if ( path == NULL )
INTERNAL_ERROR ( xcParamNull, "path is NULL" );
else
{
DictionaryEntry * node = ( DictionaryEntry * )
BSTreeFind ( & self -> dictionary, ( const void * ) path, DictionaryEntryFind );
if ( node == NULL )
{
INTERNAL_ERROR ( xcUnexpected, "dictionary item '%s' is not found", path );
}
else
{
switch ( node -> type )
{
case NGS_StatisticValueType_UInt64:
{
char buf[1024];
size_t num_writ;
string_printf ( buf, sizeof(buf), &num_writ, "%lu", node -> value . u64 );
return NGS_StringMakeCopy ( ctx, buf, num_writ );
}
break;
case NGS_StatisticValueType_Int64:
{
char buf[1024];
size_t num_writ;
string_printf ( buf, sizeof(buf), &num_writ, "%li", node -> value . i64 );
return NGS_StringMakeCopy ( ctx, buf, num_writ );
}
case NGS_StatisticValueType_Real:
{
char buf[1024];
size_t num_writ;
string_printf ( buf, sizeof(buf), &num_writ, "%f", node -> value . real );
return NGS_StringMakeCopy ( ctx, buf, num_writ );
}
case NGS_StatisticValueType_String:
return NGS_StringDuplicate ( node -> value . str, ctx );
default :
INTERNAL_ERROR ( xcUnexpected, "unexpected type %u for dictionary item '%s'", node -> type, path );
break;
}
}
}
return NULL;
}
/* Substr
* create a new allocation
* returns a substring, either at a simple offset
* or at an offset with length
*/
NGS_String * NGS_StringSubstrOffset ( const NGS_String * self, ctx_t ctx, uint64_t offset )
{
FUNC_ENTRY ( ctx, rcSRA, rcString, rcAccessing );
if ( self == NULL )
INTERNAL_ERROR ( xcSelfNull, "attempt to access NULL NGS_String" );
else if ( offset == 0 )
return NGS_StringDuplicate ( self, ctx );
else
{
NGS_String * dup;
if ( offset > ( uint64_t ) self -> size )
offset = self -> size;
TRY ( dup = NGS_StringMake ( ctx, self -> str + offset, self -> size - ( size_t ) offset ) )
{
dup -> orig = NGS_StringDuplicate ( self, ctx );
return dup;
}
}
void SRA_StatisticsAddString ( SRA_Statistics * self, ctx_t ctx, const char * path, const NGS_String * value )
{
FUNC_ENTRY ( ctx, rcSRA, rcDatabase, rcAccessing );
assert ( self );
if ( path == NULL )
INTERNAL_ERROR ( xcParamNull, "path is NULL" );
else
{
TRY ( DictionaryEntry * node = MakeNode ( self, ctx, path ) )
{
node -> type = NGS_StatisticValueType_String;
node -> value . str = NGS_StringDuplicate ( value, ctx );
}
}
static
NGS_String * SRA_DB_ReadCollectionGetName ( SRA_DB_ReadCollection * self, ctx_t ctx )
{
FUNC_ENTRY ( ctx, rcSRA, rcDatabase, rcAccessing );
return NGS_StringDuplicate ( self -> run_name, ctx );
}
