void FlowContext::SetOpts(OptArgs &opts, Json::Value& json_params)
{
string fo = RetrieveParameterString(opts, json_params, '-', "flow-order", "");
if(fo.length() > 0)
{
if ( flowOrder )
free ( flowOrder );
flowOrder = strdup ( fo.c_str() );
numFlowsPerCycle = strlen ( flowOrder );
flowOrderOverride = true;
}
int tmp_flowlimit = RetrieveParameterInt(opts, json_params, '-', "flowlimit", -1);
if(tmp_flowlimit >= 0)
{
SetFlowLimit( tmp_flowlimit );
}
vector<int> vec;
RetrieveParameterVectorInt(opts, json_params, '-', "start-flow-plus-interval", "0,0", vec);
if(vec.size() == 2)
{
if( vec[1] > 0)
{
SetFlowRange(vec[0], vec[1]);
}
}
else
{
fprintf ( stderr, "Option Error: start-flow-plus-interval format wrong, not size = 2\n" );
exit ( EXIT_FAILURE );
}
}
void FlowContext::SetOpts(OptArgs &opts, Json::Value& json_params)
{
string fo = RetrieveParameterString(opts, json_params, '-', "flow-order", "");
if(fo.length() > 0)
{
if ( flowOrder )
free ( flowOrder );
// upgrade floworder to all-caps(!)
// otherwise problems as the code does direct char compares
for (unsigned int i=0; i<fo.size(); i++){
fo.at(i) = toupper(fo.at(i));
}
flowOrder = strdup ( fo.c_str() );
numFlowsPerCycle = strlen ( flowOrder );
flowOrderOverride = true;
}
int tmp_flowlimit = RetrieveParameterInt(opts, json_params, '-', "flowlimit", -1);
if(tmp_flowlimit >= 0)
{
SetFlowLimit( tmp_flowlimit );
}
vector<int> vec;
RetrieveParameterVectorInt(opts, json_params, '-', "start-flow-plus-interval", "0,0", vec);
if(vec.size() == 2)
{
if( vec[1] > 0)
{
SetFlowRange(vec[0], vec[1]);
}
}
else
{
fprintf ( stderr, "Option Error: start-flow-plus-interval format wrong, not size = 2\n" );
exit ( EXIT_FAILURE );
}
}
void SpatialContext::SetOpts(OptArgs &opts, Json::Value& json_params)
{
chipType = GetParamsString(json_params, "chipType", "");
vector<int> vec1;
RetrieveParameterVectorInt(opts, json_params, '-', "region-size", "", vec1);
if(vec1.size() > 0)
{
if(vec1.size() == 2)
{
regionXSize = vec1[0];
regionYSize = vec1[1];
}
else
{
fprintf ( stderr, "Option Error: region-size format wrong, not size = 2\n" );
exit ( EXIT_FAILURE );
}
}
vector<int> vec2;
RetrieveParameterVectorInt(opts, json_params, '-', "cropped", "", vec2);
if(vec2.size() > 0)
{
if(vec2.size() == 4)
{
numCropRegions++;
cropRegions = ( Region * ) realloc ( cropRegions, sizeof ( Region ) * numCropRegions );
cropRegions[numCropRegions-1].col = vec2[0];
cropRegions[numCropRegions-1].row = vec2[1];
cropRegions[numCropRegions-1].w = vec2[2];
cropRegions[numCropRegions-1].h = vec2[3];
isCropped = true;
}
else
{
fprintf ( stderr, "Option Error: cropped format wrong, not size = 4\n" );
exit ( EXIT_FAILURE );
}
}
vector<int> vec3;
RetrieveParameterVectorInt(opts, json_params, '-', "analysis-region", "", vec3);
if(vec3.size() > 0)
{
if(vec3.size() == 4)
{
chipRegion.col = vec3[0];
chipRegion.row = vec3[1];
chipRegion.w = vec3[2];
chipRegion.h = vec3[3];
}
else
{
fprintf ( stderr, "Option Error: analysis-region format wrong, not size = 4\n" );
exit ( EXIT_FAILURE );
}
}
vector<int> vec4;
RetrieveParameterVectorInt(opts, json_params, '-', "cropped-region-origin", "", vec4);
if(vec4.size() > 0)
{
if(vec4.size() == 2)
{
cropped_region_x_offset = vec4[0];
cropped_region_y_offset = vec4[1];
}
else
{
fprintf ( stderr, "Option Error: cropped-region-origin format wrong, not size = 2\n" );
exit ( EXIT_FAILURE );
}
}
}