void
init_clara()
{
at_32 n,handle;
C(GetAvailableCameras(&n));
C(GetCameraHandle(n-1,&handle));
C(SetCurrentCamera(handle));
C(Initialize("/usr/local/etc/andor"));
// C(SetTriggerMode(1 /*external*/));
C(SetTriggerMode(0 /*internal*/));
C(SetExposureTime(.001));
C(SetReadMode(4 /*image*/));
C(SetAcquisitionMode(1 /*single scan*/));
C(CoolerON());
C(SetADChannel(1 /*fast*/));
C(SetFastExtTrigger(1));
C(SetFrameTransferMode(1));
int h=512, w=512;
clara_h=h;
clara_w=w;
//C(SetIsolatedCropMode(1,h,w,1,1));
C(SetImage(1,1,1,w,1,h));
C(GetSizeOfCircularBuffer(&clara_circ_buf_size));
clara_buf=malloc(sizeof(*clara_buf)*
h*w*clara_circ_buf_size);
if(!clara_buf)
printf("can't allocate memory for pictures\n");
//C(SetAcquisitionMode(5 /*run till abort*/));
C(SetTemperature(-15));
}
int main(int argc, char *argv[])
{
int adcChannel=1, minX=0, minY=0, binX=1, binY=1, sizeX=1024, sizeY=1024;
int triggerMode=0, numExposures=2, numImages=3;
float mAcquireTime=0.1f, mAccumulatePeriod=1.0f, mAcquirePeriod=4.0f;
float acquireTimeAct, accumulatePeriodAct, acquirePeriodAct;
int AAKinetics=3, ATInternal=0;
time_t startTime, endTime;
int acquireStatus;
checkStatus(Initialize("/usr/local/etc/andor"));
printf("SetTriggerMode(%d)\n", triggerMode);
checkStatus(SetTriggerMode(ATInternal));
printf("SetADChannel(%d)\n", adcChannel);
checkStatus(SetADChannel(adcChannel));
//Set fastest HS speed.
printf("SetHSSpeed(0, 0)\n");
checkStatus(SetHSSpeed(0, 0));
printf("SetImage(%d,%d,%d,%d,%d,%d)\n",
binX, binY, minX+1, minX+sizeX, minY+1, minY+sizeY);
checkStatus(SetImage(binX, binY, minX+1, minX+sizeX, minY+1, minY+sizeY));
printf("SetExposureTime(%f)\n", mAcquireTime);
checkStatus(SetExposureTime(mAcquireTime));
printf("SetAcquisitionMode(AAKinetics)\n");
checkStatus(SetAcquisitionMode(AAKinetics));
printf("SetNumberAccumulations(%d)\n", numExposures);
checkStatus(SetNumberAccumulations(numExposures));
printf("SetAccumulationCycleTime(%f)\n", mAccumulatePeriod);
checkStatus(SetAccumulationCycleTime(mAccumulatePeriod));
printf("SetNumberKinetics(%d)\n", numImages);
checkStatus(SetNumberKinetics(numImages));
printf("SetKineticCycleTime(%f)\n", mAcquirePeriod);
checkStatus(SetKineticCycleTime(mAcquirePeriod));
checkStatus(GetAcquisitionTimings(&acquireTimeAct, &accumulatePeriodAct, &acquirePeriodAct));
printf("GetAcquisitionTimings(exposure=%f, accumulate=%f, kinetic=%f)\n",
acquireTimeAct, accumulatePeriodAct, acquirePeriodAct);
time(&startTime);
printf("StartAcquisition()\n");
checkStatus(StartAcquisition());
while (1) {
printf("GetStatus()\n");
checkStatus(GetStatus(&acquireStatus));
if (acquireStatus != DRV_ACQUIRING) break;
printf("WaitForAcquisition()\n");
checkStatus(WaitForAcquisition());
time(&endTime);
printf("Time since start=%f\n", difftime(endTime, startTime));
}
return 0;
}
//------------------------------------------------------------------------------
// FUNCTION NAME: InitializeCamera()
//
// RETURNS: If the function terminates before entering the message loop,
// return FALSE.
// Otherwise, return the WPARAM value sent by the WM_QUIT
// message.
//
// LAST MODIFIED: PMcK 11/11/98
//
// DESCRIPTION: calls initialization function, processes message loop
//
// Windows recognizes this function by name as the initial
// entry point for the program. This function calls the
// application initialization routine, if no other instance of
// the program is running, and always calls the instance
// initialization routine. It then executes a message
// retrieval and dispatch loop that is the top-level control
// structure for the remainder of execution. The loop is
// terminated when a WM_QUIT message is received, at which
// time this function exits the application instance by
// returning the value passed by PostQuitMessage().
//
// If the function must abort before entering the message loop,
// it returns the conventional value NULL.
//
//
// ARGUMENTS: hInstance - The handle to the instance of this application
// that is currently being executed.
//
// hPrevInstance - The handle to the instance of this
// application that was last executed. If this is the only
// instance of this application executing, hPrevInstance is
// NULL. In Win32 applications, this parameter is always NULL.
//
// lpCmdLine - A pointer to a null terminated string specifying
// the command line of the application.
//
// nCmdShow - Specifies how the main window is to be diplayed.
//------------------------------------------------------------------------------
bool ANDOR885_Camera::InitializeCamera()
{
AndorCapabilities caps;
char aBuffer[256];
int errorValue;
bool errorFlag = false;
// int test,test2; //need to pause while camera initializes
float speed, STemp, gain;
int iSpeed, nAD, nAmp, nPreAmp, index, IsPreAmpAvailable;
int i;
caps.ulSize = sizeof(AndorCapabilities);
long numCameras;
GetAvailableCameras(&numCameras);
GetCurrentDirectoryA(256,aBuffer);// Look in current working directory
// for driver files. Note: had to override usual mapping of GetCurrentDirectory to
// GetCurrentDirectoryW because of mismatch of argument types.
errorValue=Initialize(aBuffer); // Initialize driver in current directory
printError(errorValue, "Initialize error", &errorFlag, ANDOR_ERROR);
if (errorFlag)
return true;
// Get camera capabilities
errorValue=GetCapabilities(&caps);
printError(errorValue, "Get Andor Capabilities information Error", &errorFlag, ANDOR_ERROR);
// Get Head Model
errorValue=GetHeadModel(model);
printError(errorValue, "Get Head Model information Error", &errorFlag, ANDOR_ERROR);
// Get detector information
errorValue=GetDetector(&imageWidth,&imageHeight);
printError(errorValue, "Get Detector information Error", &errorFlag, ANDOR_ERROR);
// Set frame transfer mode
errorValue=SetFrameTransferMode((frameTransfer == ANDOR_ON) ? 1 : 0);
printError(errorValue, "Set Frame Transfer Mode Error", &errorFlag, ANDOR_ERROR);
// Set acquisition mode to required setting specified in xxxxWndw.c
errorValue=SetAcquisitionMode(acquisitionMode);
printError(errorValue, "Set Acquisition Mode Error", &errorFlag, ANDOR_ERROR);
if(caps.ulGetFunctions > 32)
{
GetEMCCDGain(&EMCCDGain);
}
if(readMode == READMODE_IMAGE) {
// This function only needs to be called when acquiring an image. It sets
// the horizontal and vertical binning and the area of the image to be
// captured. In this example it is set to 1x1 binning and is acquiring the
// whole image
SetImage(1,1,1,imageWidth,1,imageHeight);
}
// Set read mode to required setting specified in xxxxWndw.c
errorValue=SetReadMode(readMode);
printError(errorValue, "Set Read Mode Error", &errorFlag, ANDOR_ERROR);
// Set Vertical speed to max
/* STemp = 0;
VSnumber = 0;
GetNumberVSSpeeds(&index);
for(iSpeed=0; iSpeed<index; iSpeed++){
GetVSSpeed(iSpeed, &speed);
if(speed > STemp){
STemp = speed;
VSnumber = iSpeed;
}
}
errorValue=SetVSSpeed(VSnumber);
printError(errorValue, "Set Vertical Speed Error", &errorFlag, ANDOR_ERROR);
*/
if (!notDestructed){
STemp = 0;
GetNumberVSSpeeds(&index);
for(iSpeed=0; iSpeed < index; iSpeed++){
GetVSSpeed(iSpeed, &speed);
verticalShiftSpeed_t.choices[iSpeed] = STI::Utils::valueToString(speed);
if(speed > STemp){
STemp = speed;
verticalShiftSpeed = iSpeed;
}
}
verticalShiftSpeed_t.initial = (--verticalShiftSpeed_t.choices.end())->second;
}
errorValue = SetVSSpeed(verticalShiftSpeed);
printError(errorValue, "Set Vertical Speed Error", &errorFlag, ANDOR_ERROR);
/* Set Vertical Clock Voltage;
note: only the fastest vertical shift speeds will benefit from the higher clock voltage;
increasing clock voltage adds noise.
*/
if (!notDestructed) {
index = 0;
errorValue = GetNumberVSAmplitudes(&index);
if (errorValue == DRV_SUCCESS) {
for (i = 0; i < index; i++){
if (i == 0){
verticalClockVoltage_t.choices[i] = "Normal";
} else {
verticalClockVoltage_t.choices[i] = STI::Utils::valueToString(i);
}
}
verticalClockVoltage_t.initial = (verticalClockVoltage_t.choices.begin())->second;
}
}
errorValue = SetVSAmplitude(0);
printError(errorValue, "Set Vertical Clock Voltage Error", &errorFlag, ANDOR_ERROR);
// Set Horizontal Speed to max and check bit depth
//(scan over all possible AD channels; although, the 885 has only one 14-bit channel)
STemp = 0;
// HSnumber = 0;
ADnumber = 0;
if (!notDestructed) {
errorValue = GetNumberADChannels(&nAD);
if (errorValue != DRV_SUCCESS){
std::cerr << "Get number AD Channel Error\n";
errorFlag = true;
}
else if (nAD != 1) {
std::cerr << "Expect 1 AD channel for this camera. The following code will miss channels\n";
errorFlag = true;
}
else {
errorValue = GetNumberHSSpeeds(0, 0, &index);
if(errorValue == DRV_SUCCESS){
for (iSpeed = 0; iSpeed < index; iSpeed++) {
GetHSSpeed(0, 0, iSpeed, &speed);
horizontalShiftSpeed_t.choices[iSpeed] = STI::Utils::valueToString(speed);
if(speed < STemp){
STemp = speed;
horizontalShiftSpeed = iSpeed;
}
}
horizontalShiftSpeed_t.initial = horizontalShiftSpeed_t.choices.find(horizontalShiftSpeed)->second;
}
//getBitDepth
if (DRV_SUCCESS != GetBitDepth(0, &bitDepth))
return true;
}
errorValue = GetNumberAmp(&nAmp);
printError(errorValue, "Get Number Amplifiers Error", &errorFlag, ANDOR_ERROR);
errorValue = GetNumberPreAmpGains(&nPreAmp);
printError(errorValue, "Get Number Preamplifiers Error", &errorFlag, ANDOR_ERROR);
if (nAmp == 1 && nAD == 1) {
for (i = 0; i < nPreAmp; i++) {
errorValue = GetPreAmpGain(i, &gain);
errorValue = IsPreAmpGainAvailable(0,0,horizontalShiftSpeed,i,&IsPreAmpAvailable);
if (IsPreAmpAvailable == 1) {
preAmpGain_t.choices[i] = STI::Utils::valueToString(gain);
}
}
if (!preAmpGain_t.choices.empty()) {
preAmpGain = preAmpGain_t.choices.begin()->first;
//preAmpGainPos = 0;
preAmpGain_t.initial = (preAmpGain_t.choices.begin())->second; // set the initial condition for the preamplifier gain
errorValue = SetPreAmpGain(preAmpGain);
printError(errorValue, "Set AD Channel Error", &errorFlag, ANDOR_ERROR);
} else {
std::cerr << "No gains available at this speed. Weird.";
errorFlag = true;
}
} else {
std::cerr << "Unexpected number of A/D's or output amps" << std::endl;
std::cerr << "Expected A/D's: 1 \t Measured: " << nAD << std::endl;
std::cerr << "Expected output Amps: 1 \t Measured: " << nAmp << std::endl;
errorFlag = true;
}
}
else {
errorValue = SetPreAmpGain(preAmpGain);
printError(errorValue, "Set AD Channel Error", &errorFlag, ANDOR_ERROR);
}
errorValue=SetADChannel(ADnumber);
printError(errorValue, "Set AD Channel Error", &errorFlag, ANDOR_ERROR);
errorValue=SetHSSpeed(0,horizontalShiftSpeed);
printError(errorValue, "Set Horizontal Speed Error", &errorFlag, ANDOR_ERROR);
if(errorFlag)
//MessageBox(GetActiveWindow(),aBuffer,"Error!",MB_OK); SMD
std::cerr<<aBuffer<<std::endl;
// Wait for 2 seconds to allow MCD to calibrate fully before allowing an
// acquisition to begin
// test=GetTickCount();
// do{
// test2=GetTickCount()-test;
// }while(test2<2000);
Sleep(2000);
errorValue = SetExposureTime(exposureTime);
printError(errorValue, "Exposure time error", &errorFlag, ANDOR_ERROR);
// It is necessary to get the actual times as the system will calculate the
// nearest possible time. eg if you set exposure time to be 0, the system
// will use the closest value (around 0.01s)
GetAcquisitionTimings(&exposureTime,&accumulateTime,&kineticTime);
std::cerr << "Actual Exposure Time is " << exposureTime << " s.\n";
// Set Shutter is made up of ttl level, shutter and open close time
//Check Get open close time
if(openTime==0)
openTime=1;
if(closeTime==0)
closeTime=1;
// Set shutter
errorValue=SetShutter(ttl,shutterMode,closeTime,openTime);
if(errorValue!=DRV_SUCCESS){
std::cerr << "Shutter error\n";
errorFlag = true;
}
else
std::cerr << "Shutter set to specifications\n";
/*// Determine availability of trigger option and set trigger selection
std::map<int,std::string>::iterator it;
std::vector<int> triggerKeys;
for (it = triggerMode_t.choices.begin(); it != triggerMode_t.choices.end(); it++)
{
errorValue = SetTriggerMode(it->first);
if (errorValue != DRV_SUCCESS)
triggerKeys.push_back(it->first);
}
for (int i = 0; i < triggerKeys.size(); i++)
triggerMode_t.choices.erase(triggerKeys.at(i));
if (triggerMode_t.choices.empty()) {
std::cerr << "No triggerModes found" << std::endl;
return true;
}
else if (triggerMode_t.choices.find(TRIGGERMODE_EXTERNAL_EXPOSURE) !=
triggerMode_t.choices.end())
triggerMode = TRIGGERMODE_EXTERNAL_EXPOSURE;
else if (triggerMode_t.choices.find(TRIGGERMODE_EXTERNAL) !=
triggerMode_t.choices.end())
triggerMode = TRIGGERMODE_EXTERNAL;
else
triggerMode = triggerMode_t.choices.begin()->first;
errorValue=SetTriggerMode(triggerMode);
printError(errorValue, "Set Trigger Mode Error", &errorFlag, ANDOR_ERROR);
triggerMode_t.initial = triggerMode_t.choices.find(triggerMode)->second;
*/
// Determine availability of trigger option and set trigger selection
std::map<int,std::string>::iterator it;
std::vector<int> triggerKeys;
for (it = triggerMode_t.choices.begin(); it != triggerMode_t.choices.end(); it++)
{
errorValue = SetTriggerMode(it->first);
if (errorValue != DRV_SUCCESS)
triggerKeys.push_back(it->first);
}
for (int i = 0; i < triggerKeys.size(); i++)
triggerMode_t.choices.erase(triggerKeys.at(i));
if (triggerMode_t.choices.empty()) {
std::cerr << "No triggerModes found" << std::endl;
return true;
}
else if (triggerMode_t.choices.find(TRIGGERMODE_EXTERNAL_EXPOSURE) !=
triggerMode_t.choices.end())
triggerMode = TRIGGERMODE_EXTERNAL_EXPOSURE;
else if (triggerMode_t.choices.find(TRIGGERMODE_EXTERNAL) !=
triggerMode_t.choices.end())
triggerMode = TRIGGERMODE_EXTERNAL;
else
triggerMode = triggerMode_t.choices.begin()->first;
errorValue=SetTriggerMode(triggerMode);
printError(errorValue, "Set Trigger Mode Error", &errorFlag, ANDOR_ERROR);
triggerMode_t.initial = triggerMode_t.choices.find(triggerMode)->second;
errorValue = GetTemperatureRange(&minTemp, &maxTemp);
if (errorValue != DRV_SUCCESS){
std::cerr << "Error finding temperature range or camera is not on" << std::endl;
errorFlag = true;
}
else {
std::cerr << "Temperature must be between " << minTemp << " and " << maxTemp << std::endl;
std::cerr << "Warning: Water cooling is required for temperatures < -58 deg C" << std::endl;
//Set temperature
if (coolerSetpt > maxTemp || coolerSetpt < minTemp) {
std::cerr << "Chosen temperature out of range." << std::endl;
if (coolerSetpt > maxTemp)
coolerSetpt = maxTemp;
else
coolerSetpt = minTemp;
std::cerr << "Resetting temp to nearest acceptable value " << std::endl;
}
errorValue = SetTemperature(coolerSetpt);
printError(errorValue, "Error setting cooler temperature", &errorFlag, ANDOR_ERROR);
int i;
errorValue = IsCoolerOn(&i);
if (i == 0) {
// if it's off and it's supposed to be on, turn it on
if (coolerStat == ANDOR_ON) {
std::cerr << "Turning on cooler." << std::endl;
errorValue = CoolerON();
printError(errorValue, "Error turning on cooler", &errorFlag, ANDOR_ERROR);
}
} else if (i == 1) {
std::cerr << "Cooler is on." << std::endl;
//if it's on and it's supposed to be off, turn it off
if (coolerStat == ANDOR_OFF)
{
errorValue = CoolerOFF();
printError(errorValue, "Error turning off cooler", &errorFlag, ANDOR_ERROR);
} else {
errorValue = GetTemperature(&i);
switch(errorValue){
case DRV_TEMP_STABILIZED:
std::cerr << "Cooler temp has stabilized at " << i << " deg C" << std::endl;
break;
case DRV_TEMP_NOT_REACHED:
std::cerr << "Cooler temp is " << i << " deg C" << std::endl;
std::cerr << "Cooler setpoint has not been reached." << std::endl;
std::cerr << "This may be because water cooling is required for setpoints < -58 deg C" << std::endl;
std::cerr << "Either wait or try resetting cooler setpoint" << std::endl;
break;
case DRV_TEMP_DRIFT:
std::cerr << "Cooler temp is " << i << " deg C" << std::endl;
std::cerr << "Cooler temperature has drifted. Try resetting setpoint" << std::endl;
break;
case DRV_TEMP_NOT_STABILIZED:
std::cerr << "Cooler temp is " << i << " deg C" << std::endl;
std::cerr << "Temperature has been reached, but cooler has not stabilized" << std::endl;
std::cerr << "Either wait or try resetting cooler setpoint" << std::endl;
break;
default:
std::cerr << "Unrecognized error sequence. Camera may be off or acquiring" << std::endl;
break;
}
}
}
if(!errorFlag){
std::cerr << "Cooler temperature set to: " << coolerSetpt << std::endl;
}
}
errorValue = SetSpool(0,0,NULL,10); //Disable spooling
printError(errorValue, "Spool mode error", &errorFlag, ANDOR_ERROR);
// Returns the value from PostQuitMessage
return errorFlag;
}