CGridSampleLimits::CGridSampleLimits(wxWindow *parent, wxWindowID id) :
_CGridEdit(parent,id),
m_pValidatePct(NULL),
m_pData(NULL),
m_pMessageBook(NULL)
//,m_bReadOnly(false)
{
wxString PEAKS(_T("peaks"));
CreateGrid(ROW_MESSAGE_BOOK_OFFSET,2);
EnableDragColSize(false);
EnableDragRowSize(false);
EnableScrolling(false,true);
SetRowLabelValue(ROW_PULLUP,_T("Max. No. of pullups peaks per sample"));
SetCellValue(ROW_PULLUP,1,PEAKS);
SetRowLabelValue(ROW_STUTTER,_T("Max. No. of stutter peaks per sample"));
SetCellValue(ROW_STUTTER,1,PEAKS);
SetRowLabelValue(ROW_ADENYLATION,_T("Max. No. of adenylation peaks per sample"));
SetCellValue(ROW_ADENYLATION,1,PEAKS);
SetRowLabelValue(ROW_OFF_LADDER,_T("Max. off-ladder alleles per sample:"));
SetCellValue(ROW_OFF_LADDER,1,PEAKS);
SetRowLabelValue(ROW_RESIDUAL,_T("Max. residual for allele (<0.5 bp):"));
SetCellValue(ROW_RESIDUAL,1,_T("Sample/Ladder BP alignment"));
SetCellEditor(ROW_RESIDUAL,0,new wxGridCellFloatEditor(-1,4));
SetDefaultCellValidator(new nwxGridCellUIntRangeValidator(0,1000000,true));
SetCellValidator(
new nwxGridCellDoubleRangeValidator(0.0,0.5,true),
ROW_RESIDUAL,0);
SetRowLabelValue(ROW_EXCESSIVE_RESIDUAL,_T("Max. No. of peaks with excessive residual:"));
SetCellValue(ROW_EXCESSIVE_RESIDUAL,1,PEAKS);
SetRowLabelValue(ROW_RFU_INCOMPLETE_SAMPLE,_T("Incomplete profile threshold for Reamp More/Reamp Less:"));
SetCellValue(ROW_RFU_INCOMPLETE_SAMPLE,1,_T("RFU"));
SetRowLabelValue(ROW_MIN_BPS_ARTIFACTS,_T("Ignore artifacts smaller than:"));
SetCellValue(ROW_MIN_BPS_ARTIFACTS,1,_T("bps"));
m_clrBackground = GetLabelBackgroundColour();
wxFont fnLabel = GetLabelFont();
for(int nRow = 0; nRow < ROW_MESSAGE_BOOK_OFFSET; nRow++)
{
SetCellBackgroundColour(nRow,1,m_clrBackground);
SetReadOnly(nRow,1,true);
SetCellFont(nRow,1,fnLabel);
SetCellAlignment(nRow,0,wxALIGN_RIGHT, wxALIGN_CENTRE);
}
SetDefaultEditor(new wxGridCellFloatEditor(1,0));
SetColLabelValue(0,_T("Value"));
SetColLabelValue(1,_T("Units"));
SetRowLabelAlignment(wxALIGN_LEFT, wxALIGN_CENTRE);
SetColLabelAlignment(wxALIGN_CENTRE, wxALIGN_CENTRE);
}
void CGridRFULimits::_Build()
{
wxFont fontChannel = GetDefaultCellFont();
wxFont fontDefault = fontChannel;
fontChannel.SetWeight(wxFONTWEIGHT_BOLD);
const CChannelColors *pChannelColors = NULL;
int nCurrentColCount = GetNumberCols();
int i;
int j;
if(nCurrentColCount < m_nCOL_COUNT)
{
InsertCols(m_nCOL_CHANNEL_START, m_nCOL_COUNT - nCurrentColCount);
_UpdateReadOnly();
}
else if(nCurrentColCount > m_nCOL_COUNT)
{
DeleteCols(m_nCOL_CHANNEL_START,nCurrentColCount - m_nCOL_COUNT);
}
InitValidators();
SetDefaultCellValidator(
new nwxGridCellUIntRangeValidator(
mainApp::RFU_MIN_ENTER,mainApp::RFU_MAX_ENTER,true));
nwxGridCellUIntRangeValidator *pVreqd =
new nwxGridCellUIntRangeValidator(
mainApp::RFU_MIN_ENTER,mainApp::RFU_MAX_ENTER,false); // does not allow empty
SetCellValidator(pVreqd,ROW_RFU_MIN,m_nCOL_SAMPLE);
SetCellValidator(pVreqd,ROW_RFU_MIN,m_nCOL_ILS);
SetCellValidator(pVreqd,ROW_RFU_MIN,m_nCOL_LADDER);
EnableDragColSize(false);
EnableDragRowSize(false);
SetDefaultCellAlignment(wxALIGN_RIGHT,wxALIGN_CENTRE);
for(i = 0; i < ROW_COUNT; i++)
{
for(j = 0; j < m_nCOL_COUNT; j++)
{
SetCellValue(i,j,"00000000"); // used for size
if(_DisabledCell(i,j))
{
SetCellBackgroundColour(i,j,GetGridLineColour());
}
}
}
SetDefaultEditor(new wxGridCellFloatEditor(1,0));
SetColLabelValue(m_nCOL_SAMPLE,"Sample");
SetColLabelValue(m_nCOL_LADDER,"Ladder");
SetColLabelValue(m_nCOL_ILS," ILS ");
SetRowLabelValue(ROW_RFU_MIN,"Analysis Threshold (RFU)");
SetRowLabelValue(ROW_RFU_INTERLOCUS,"Min. Interlocus RFU");
SetRowLabelValue(ROW_RFU_MAX,"Max. RFU");
SetRowLabelValue(ROW_DETECTION,"Detection Threshold (RFU)");
SetRowLabelAlignment(wxALIGN_LEFT, wxALIGN_CENTRE);
SetMargins(0,0);
ChannelNumberIterator itrChannelCol;
int nCol;
const wxChar *psDye = NULL;
wxString sLabel;
for(itrChannelCol = m_vnChannelNumbers.begin(),
nCol = m_nCOL_CHANNEL_START;
itrChannelCol != m_vnChannelNumbers.end();
++itrChannelCol, ++nCol)
{
if(m_pKitColors != NULL)
{
pChannelColors = m_pKitColors->GetColorChannel(*itrChannelCol);
psDye = (pChannelColors == NULL) ? NULL : (const wxChar *) pChannelColors->GetDyeName();
}
CGridLocusColumns::FORMAT_CHANNEL_DYE(&sLabel,*itrChannelCol,psDye);
SetColLabelValue(nCol,sLabel);
if(pChannelColors != NULL)
{
_SetupChannelColumn(nCol,pChannelColors->GetColorAnalyzed(),fontChannel);
}
else
{
_SetupDefaultChannelColumn(nCol);
}
}
nwxGrid::UpdateLabelSizes(this);
AutoSize();
_DisableUnused();
}
void CGridSampleLimits::SetData(
CLabThresholds *pData, const CXMLmessageBook *pMessageBook)
{
m_pData = pData;
m_pMessageBook = pMessageBook;
typedef map<wxString,size_t> MSG_THRESHOLDS;
set<wxString> setMsgThresholds; // message names for thresholds already used
size_t nCount =
((m_pMessageBook != NULL) && m_pMessageBook->IsOK())
? m_pMessageBook->GetMessageCount()
: 0;
if(nCount)
{
const wxString sEmpty;
const wxString sUnitPCT(_T("%"));
const CXMLmessageBookSM *pmsgSM;
size_t nCountKeep = 0;
bool bPct;
// the following 5 will not use the message book
setMsgThresholds.insert(CLabThresholds::g_psmNumberOfPullUpsInSample);
setMsgThresholds.insert(CLabThresholds::g_psmNumberOfStuttersInSample);
setMsgThresholds.insert(CLabThresholds::g_psmNumberOfAdenylationsInSample);
setMsgThresholds.insert(CLabThresholds::g_psmNumberOfOffLadderAllelesInSample);
setMsgThresholds.insert(CLabThresholds::g_psmNumberOfExcessiveResidualsInSample);
m_vpMsgBookSM.clear();
m_vpMsgBookSM.reserve(nCount);
for(size_t i = 0; i < nCount; i++)
{
pmsgSM = m_pMessageBook->GetMessage(i);
if(setMsgThresholds.find(pmsgSM->GetName()) == setMsgThresholds.end())
{
m_vpMsgBookSM.push_back(pmsgSM);
setMsgThresholds.insert(pmsgSM->GetName());
if(!pmsgSM->EmptyDescriptor())
{
nCountKeep++;
}
}
}
SetMessageBookRows((int)nCountKeep);
if(nCountKeep)
{
wxFont fn = GetLabelFont();
vector<const CXMLmessageBookSM *>::iterator itrSM;
int nRow = ROW_MESSAGE_BOOK_OFFSET;
for(itrSM = m_vpMsgBookSM.begin();
itrSM != m_vpMsgBookSM.end();
++itrSM)
{
pmsgSM = *itrSM;
if(!pmsgSM->EmptyDescriptor())
{
bPct = pmsgSM->IsPercent();
if(bPct)
{
SetCellValidator(GetPctValidator(),nRow,0);
}
SetRowLabelValue(nRow,pmsgSM->GetDescriptor());
SetCellBackgroundColour(nRow,1,m_clrBackground);
SetCellFont(nRow,1,fn);
SetCellValue(nRow,1,bPct ? sUnitPCT : sEmpty);
SetReadOnly(nRow,1,true);
if(pmsgSM->IsPreset())
{
SetCellAlignment(nRow,0,wxALIGN_RIGHT,wxALIGN_CENTRE);
}
nRow++;
}
}
}
}
SetCellValue(0,0,"00000000");
SetMargins(0,0);
nwxGrid::UpdateLabelSizes(this);
AutoSize();
}
