METHODDEF boolean get_app0(j_decompress_ptr cinfo)
/* Process an APP0 marker */
{
#define JFIF_LEN 14
INT32 length;
UINT8 b[JFIF_LEN];
int buffp;
INPUT_VARS(cinfo);
INPUT_2BYTES(cinfo, length, return FALSE);
length -= 2;
/* See if a JFIF APP0 marker is present */
if(length >= JFIF_LEN)
{
for(buffp = 0; buffp < JFIF_LEN; buffp++)
INPUT_BYTE(cinfo, b[buffp], return FALSE);
length -= JFIF_LEN;
if(b[0] == 0x4A && b[1] == 0x46 && b[2] == 0x49 && b[3] == 0x46 && b[4] == 0)
{
/* Found JFIF APP0 marker: check version */
/* Major version must be 1, anything else signals an incompatible change.
* We used to treat this as an error, but now it's a nonfatal warning,
* because some bozo at Hijaak couldn't read the spec.
* Minor version should be 0..2, but process anyway if newer.
*/
if(b[5] != 1)
WARNMS2(cinfo, JWRN_JFIF_MAJOR, b[5], b[6]);
else if(b[6] > 2)
TRACEMS2(cinfo, 1, JTRC_JFIF_MINOR, b[5], b[6]);
/* Save info */
cinfo->saw_JFIF_marker = TRUE;
cinfo->density_unit = b[7];
cinfo->X_density = (b[8] << 8) + b[9];
cinfo->Y_density = (b[10] << 8) + b[11];
TRACEMS3(cinfo, 1, JTRC_JFIF, cinfo->X_density, cinfo->Y_density, cinfo->density_unit);
if(b[12] | b[13])
TRACEMS2(cinfo, 1, JTRC_JFIF_THUMBNAIL, b[12], b[13]);
if(length != ((INT32) b[12] * (INT32) b[13] * (INT32) 3))
TRACEMS1(cinfo, 1, JTRC_JFIF_BADTHUMBNAILSIZE, (int)length);
}
else
{
/* Start of APP0 does not match "JFIF" */
TRACEMS1(cinfo, 1, JTRC_APP0, (int)length + JFIF_LEN);
}
}
else
{
LOCAL boolean open_ems_store(j_common_ptr cinfo, backing_store_ptr info, long total_bytes_needed)
{
EMScontext ctx;
/* Is EMS driver there? */
if(!jems_available())
return FALSE;
/* Get status, make sure EMS is OK */
ctx.ax = 0x4000;
jems_calldriver((EMScontext far *) & ctx);
if(HIBYTE(ctx.ax) != 0)
return FALSE;
/* Get version, must be >= 4.0 */
ctx.ax = 0x4600;
jems_calldriver((EMScontext far *) & ctx);
if(HIBYTE(ctx.ax) != 0 || LOBYTE(ctx.ax) < 0x40)
return FALSE;
/* Try to allocate requested space */
ctx.ax = 0x4300;
ctx.bx = (unsigned short)((total_bytes_needed + EMSPAGESIZE - 1L) / EMSPAGESIZE);
jems_calldriver((EMScontext far *) & ctx);
if(HIBYTE(ctx.ax) != 0)
return FALSE;
/* Succeeded, save the handle and away we go */
info->handle.ems_handle = ctx.dx;
info->read_backing_store = read_ems_store;
info->write_backing_store = write_ems_store;
info->close_backing_store = close_ems_store;
TRACEMS1(cinfo, 1, JTRC_EMS_OPEN, ctx.dx);
return TRUE; /* succeeded */
}
open_xms_store (j_common_ptr cinfo, backing_store_ptr info,
long total_bytes_needed)
{
XMScontext ctx;
/* Get address of XMS driver */
jxms_getdriver((XMSDRIVER far *) & xms_driver);
if (xms_driver == NULL)
return FALSE; /* no driver to be had */
/* Get version number, must be >= 2.00 */
ctx.ax = 0x0000;
jxms_calldriver(xms_driver, (XMScontext far *) & ctx);
if (ctx.ax < (unsigned short) 0x0200)
return FALSE;
/* Try to get space (expressed in kilobytes) */
ctx.dx = (unsigned short) ((total_bytes_needed + 1023L) >> 10);
ctx.ax = 0x0900;
jxms_calldriver(xms_driver, (XMScontext far *) & ctx);
if (ctx.ax != 1)
return FALSE;
/* Succeeded, save the handle and away we go */
info->handle.xms_handle = ctx.dx;
info->read_backing_store = read_xms_store;
info->write_backing_store = write_xms_store;
info->close_backing_store = close_xms_store;
TRACEMS1(cinfo, 1, JTRC_XMS_OPEN, ctx.dx);
return TRUE; /* succeeded */
}
/*LOCAL*/static void create_colormap (j_decompress_ptr cinfo)
{
my_cquantize_ptr cquantize = (my_cquantize_ptr) cinfo->cquantize;
JSAMPARRAY colormap; /* Created colormap */
int total_colors; /* Number of distinct output colors */
int i, j, k, nci, blksize, blkdist, ptr, val;
/* Select number of colors for each component */
total_colors = select_ncolors(cinfo, cquantize->Ncolors);
/* Report selected color counts */
if (cinfo->out_color_components == 3)
{ TRACEMS4(cinfo, 1, JTRC_QUANT_3_NCOLORS,
total_colors, cquantize->Ncolors[0],
cquantize->Ncolors[1], cquantize->Ncolors[2]);
}
else
{ TRACEMS1(cinfo, 1, JTRC_QUANT_NCOLORS, total_colors);
}
/* Allocate and fill in the colormap. */
/* The colors are ordered in the map in standard row-major order, */
/* i.e. rightmost (highest-indexed) color changes most rapidly. */
colormap = (*cinfo->mem->alloc_sarray)
((j_common_ptr) cinfo, JPOOL_IMAGE,
(JDIMENSION) total_colors, (JDIMENSION) cinfo->out_color_components);
/* blksize is number of adjacent repeated entries for a component */
/* blkdist is distance between groups of identical entries for a component */
blkdist = total_colors;
for (i = 0; i < cinfo->out_color_components; i++)
{
/* fill in colormap entries for i'th color component */
nci = cquantize->Ncolors[i]; /* # of distinct values for this color */
blksize = blkdist / nci;
for (j = 0; j < nci; j++)
{
/* Compute j'th output value (out of nci) for component */
val = output_value(cinfo, i, j, nci-1);
/* Fill in all colormap entries that have this value of this component */
for (ptr = j * blksize; ptr < total_colors; ptr += blkdist)
{
/* fill in blksize entries beginning at ptr */
for (k = 0; k < blksize; k++)
{ colormap[i][ptr+k] = (JSAMPLE) val; }
}
}
blkdist = blksize; /* blksize of this color is blkdist of next */
}
/* Save the colormap in private storage,
* where it will survive color quantization mode changes.
*/
cquantize->sv_colormap = colormap;
cquantize->sv_actual = total_colors;
}
METHODDEF boolean
get_app0 (j_decompress_ptr cinfo)
/* Process an APP0 marker */
{
#define JFIF_LEN 14
INT32 length;
UINT8 b[JFIF_LEN];
int buffp;
INPUT_VARS(cinfo);
INPUT_2BYTES(cinfo, length, return FALSE);
length -= 2;
/* See if a JFIF APP0 marker is present */
if (length >= JFIF_LEN) {
for (buffp = 0; buffp < JFIF_LEN; buffp++)
INPUT_BYTE(cinfo, b[buffp], return FALSE);
length -= JFIF_LEN;
if (b[0]==0x4A && b[1]==0x46 && b[2]==0x49 && b[3]==0x46 && b[4]==0) {
/* Found JFIF APP0 marker: check version */
/* Major version must be 1 */
if (b[5] != 1)
ERREXIT2(cinfo, JERR_JFIF_MAJOR, b[5], b[6]);
/* Minor version should be 0..2, but try to process anyway if newer */
if (b[6] > 2)
TRACEMS2(cinfo, 1, JTRC_JFIF_MINOR, b[5], b[6]);
/* Save info */
cinfo->saw_JFIF_marker = TRUE;
cinfo->density_unit = b[7];
cinfo->X_density = (b[8] << 8) + b[9];
cinfo->Y_density = (b[10] << 8) + b[11];
TRACEMS3(cinfo, 1, JTRC_JFIF,
cinfo->X_density, cinfo->Y_density, cinfo->density_unit);
if (b[12] | b[13])
TRACEMS2(cinfo, 1, JTRC_JFIF_THUMBNAIL, b[12], b[13]);
if (length != ((INT32) b[12] * (INT32) b[13] * (INT32) 3))
TRACEMS1(cinfo, 1, JTRC_JFIF_BADTHUMBNAILSIZE, (int) length);
} else {
/* Start of APP0 does not match "JFIF" */
TRACEMS1(cinfo, 1, JTRC_APP0, (int) length + JFIF_LEN);
}
} else {
close_xms_store (j_common_ptr cinfo, backing_store_ptr info)
{
XMScontext ctx;
ctx.dx = info->handle.xms_handle;
ctx.ax = 0x0a00;
jxms_calldriver(xms_driver, (XMScontext far *) & ctx);
TRACEMS1(cinfo, 1, JTRC_XMS_CLOSE, info->handle.xms_handle);
/* we ignore any error return from the driver */
}
close_ems_store (j_common_ptr cinfo, backing_store_ptr info)
{
EMScontext ctx;
ctx.ax = 0x4500;
ctx.dx = info->handle.ems_handle;
jems_calldriver((EMScontext far *) & ctx);
TRACEMS1(cinfo, 1, JTRC_EMS_CLOSE, info->handle.ems_handle);
/* we ignore any error return from the driver */
}
METHODDEF void
close_file_store (backing_store_ptr info)
{
jdos_close(info->handle.file_handle); /* close the file */
remove(info->temp_name); /* delete the file */
/* If your system doesn't have remove(), try unlink() instead.
* remove() is the ANSI-standard name for this function, but
* unlink() was more common in pre-ANSI systems.
*/
TRACEMS1(methods, 1, "Closed DOS file %d", info->handle.file_handle);
}
METHODDEF void
close_ems_store (backing_store_ptr info)
{
EMScontext ctx;
ctx.ax = 0x4500;
ctx.dx = info->handle.ems_handle;
jems_calldriver((EMScontext far *) & ctx);
TRACEMS1(methods, 1, "Freed EMS handle %u", info->handle.ems_handle);
/* we ignore any error return from the driver */
}
METHODDEF void
close_xms_store (backing_store_ptr info)
{
XMScontext ctx;
ctx.dx = info->handle.xms_handle;
ctx.ax = 0x0a00;
jxms_calldriver(xms_driver, (XMScontext far *) & ctx);
TRACEMS1(methods, 1, "Freed XMS handle %u", info->handle.xms_handle);
/* we ignore any error return from the driver */
}
/*{{{ write_synamps_exit(transform_info_ptr tinfo) {*/
METHODDEF void
write_synamps_exit(transform_info_ptr tinfo) {
struct write_synamps_storage *local_arg=(struct write_synamps_storage *)tinfo->methods->local_storage;
#define SETUP_OFFSET_NSWEEPS 360
#define SETUP_OFFSET_NUMSAMPLES 864
#define SETUP_OFFSET_EVENTTABLEPOS 886
/* Apparently NeuroScan write this even for epoched files although there's no event table there...
* It is important there to compute bytes_per_sample */
local_arg->EEG.EventTablePos=ftell(local_arg->SCAN);
if (local_arg->output_format==FORMAT_CNTFILE) {
TEEG TagType;
EVENT1 event;
int const nevents=local_arg->triggers.current_length/sizeof(struct trigger);
int n;
TagType.Teeg=TEEG_EVENT_TAB1;
TagType.Size=(nevents+1)*sm_EVENT1[0].offset; /* sm_EVENT1[0].offset is sizeof(EVENT1) in the file. */
TagType.p_o.Offset=0L;
# ifndef LITTLE_ENDIAN
change_byteorder((char *)&TagType, sm_TEEG);
# endif
write_struct((char *)&TagType, sm_TEEG, local_arg->SCAN);
for (n=0; n<nevents; n++) {
struct trigger * const intrig=((struct trigger *)local_arg->triggers.buffer_start)+n;
int acc=NAV_STARTSTOP, type=0, resp=0, keyboard=0;
while (acc>=0 && intrig->code!=neuroscan_accept_translation[acc]) acc--;
if (acc<0) {
acc=0;
if (intrig->code>0) {
type=intrig->code;
} else {
resp=(-intrig->code)&0xf;
if (resp==0) {
keyboard=(-intrig->code)>>4;
if (keyboard==0) {
TRACEMS1(tinfo->emethods, 1, "write_synamps_exit: Can't decipher event code %d\n", MSGPARM(intrig->code));
} else {
keyboard--;
}
}
}
}
/* This subroutine encapsulates the coding of the different event codes
* into a unified signed code */
LOCAL void
read_synamps_push_keys(transform_info_ptr tinfo, long position, int TrigVal, int KeyPad, int KeyBoard, enum NEUROSCAN_ACCEPTVALUES Accept) {
struct read_synamps_storage * const local_arg=(struct read_synamps_storage *)tinfo->methods->local_storage;
int code;
if (Accept!=0 && (Accept<NAV_DCRESET || Accept>NAV_STARTSTOP)) {
TRACEMS2(tinfo->emethods, 0, "read_synamps_push_keys: Unknown Accept value %d at position %d!\n", MSGPARM(Accept), MSGPARM(position));
return;
}
code=TrigVal-KeyPad+neuroscan_accept_translation[Accept];
if (code==0) {
/* At least in Edit 4.x, KeyPad F2 is written as KeyBoard=0 with everything else 0 too... */
code= -(((KeyBoard&0xf)+1)<<4);
}
if (code==0) {
TRACEMS1(tinfo->emethods, 0, "read_synamps_push_keys: Trigger with trigcode 0 at position %d!\n", MSGPARM(position));
} else {
push_trigger(&local_arg->triggers, position, code, NULL);
}
}
/*{{{ get_mfxepoch(transform_info_ptr tinfo)*/
METHODDEF DATATYPE *
get_mfxepoch(transform_info_ptr tinfo) {
struct get_mfxepoch_storage *local_arg=(struct get_mfxepoch_storage *)tinfo->methods->local_storage;
transform_argument *args=tinfo->methods->arguments;
DATATYPE *newepoch;
int again=FALSE;
long epochlength;
if (local_arg->epochs--==0) return NULL;
do {
again=FALSE;
if ((newepoch=(DATATYPE *)mfx_getepoch(local_arg->fileptr, &epochlength, local_arg->beforetrig-local_arg->offset, local_arg->aftertrig+local_arg->offset, local_arg->trigname, args[ARGS_TRIGCODE].arg.i))==NULL) {
/* MFX_READERR4 is the normal end-of-file 'error' */
TRACEMS1(tinfo->emethods, (mfx_lasterr==MFX_READERR4 ? 1 : 0), "get_mfxepoch: mfx error >%s<\n", MSGPARM(mfx_errors[mfx_lasterr]));
/* If the error was due to the beforetrig time being too long, try to
* skip this epoch and try the next one */
if (mfx_lasterr==MFX_NEGSEEK) {
again=TRUE;
mfx_seektrigger(local_arg->fileptr, local_arg->trigname, args[ARGS_TRIGCODE].arg.i);
TRACEMS(tinfo->emethods, 1, "get_mfxepoch: Retrying...\n");
}
}
} while (again);
if (newepoch!=NULL) {
/* TOUCH TINFO ONLY IF GETEPOCH WAS SUCCESSFUL */
get_mfxinfo(local_arg->fileptr, tinfo);
tinfo->z_label=NULL;
tinfo->nr_of_points=epochlength;
tinfo->length_of_output_region=epochlength*tinfo->nr_of_channels;
tinfo->beforetrig=local_arg->beforetrig;
tinfo->aftertrig=tinfo->nr_of_points-tinfo->beforetrig;
tinfo->multiplexed=TRUE;
tinfo->sfreq=1.0/(local_arg->fileptr)->fileheader.sample_period;
tinfo->data_type=TIME_DATA;
tinfo->itemsize=1; /* Still, mfx doesn't support tuple data */
tinfo->leaveright=0;
tinfo->nrofaverages=1;
}
return newepoch;
}
LOCAL boolean
get_sos (j_decompress_ptr cinfo)
/* Process a SOS marker */
{
INT32 length;
int i, ci, n, c, cc, ccc;
jpeg_component_info * compptr;
INPUT_VARS(cinfo);
if (! cinfo->marker->saw_SOF)
ERREXIT(cinfo, JERR_SOS_NO_SOF);
INPUT_2BYTES(cinfo, length, return FALSE);
INPUT_BYTE(cinfo, n, return FALSE); /* Number of components */
if (length != (n * 2 + 6) || n < 1 || n > MAX_COMPS_IN_SCAN)
ERREXIT(cinfo, JERR_BAD_LENGTH);
TRACEMS1(cinfo, 1, JTRC_SOS, n);
cinfo->comps_in_scan = n;
/* Collect the component-spec parameters */
for (i = 0; i < n; i++) {
INPUT_BYTE(cinfo, cc, return FALSE);
INPUT_BYTE(cinfo, c, return FALSE);
for (ci = 0, compptr = cinfo->comp_info; ci < cinfo->num_components;
ci++, compptr++) {
if (cc == compptr->component_id)
goto id_found;
}
ERREXIT1(cinfo, JERR_BAD_COMPONENT_ID, cc);
id_found:
cinfo->cur_comp_info[i] = compptr;
compptr->dc_tbl_no = (c >> 4) & 15;
compptr->ac_tbl_no = (c ) & 15;
TRACEMS3(cinfo, 1, JTRC_SOS_COMPONENT, cc,
compptr->dc_tbl_no, compptr->ac_tbl_no);
}
/* Collect the additional scan parameters Ss, Se, Ah/Al.
* Currently we just validate that they are right for sequential JPEG.
* This ought to be an error condition, but we make it a warning because
* there are some baseline files out there with all zeroes in these bytes.
* (Thank you, Logitech :-(.)
*/
INPUT_BYTE(cinfo, c, return FALSE);
INPUT_BYTE(cinfo, cc, return FALSE);
INPUT_BYTE(cinfo, ccc, return FALSE);
if (c != 0 || cc != DCTSIZE2-1 || ccc != 0)
WARNMS(cinfo, JWRN_NOT_SEQUENTIAL);
/* Prepare to scan data & restart markers */
cinfo->marker->next_restart_num = 0;
INPUT_SYNC(cinfo);
return TRUE;
}
get_sos (j_decompress_ptr cinfo)
/* Process a SOS marker */
{
INT32 length;
int i, ci, n, c, cc;
jpeg_component_info * compptr;
INPUT_VARS(cinfo);
if (! cinfo->marker->saw_SOF)
ERREXIT(cinfo, JERR_SOS_NO_SOF);
INPUT_2BYTES(cinfo, length, return FALSE);
INPUT_BYTE(cinfo, n, return FALSE); /* Number of components */
if (length != (n * 2 + 6) || n < 1 || n > MAX_COMPS_IN_SCAN)
ERREXIT(cinfo, JERR_BAD_LENGTH);
TRACEMS1(cinfo, 1, JTRC_SOS, n);
cinfo->comps_in_scan = n;
/* Collect the component-spec parameters */
for (i = 0; i < n; i++) {
INPUT_BYTE(cinfo, cc, return FALSE);
INPUT_BYTE(cinfo, c, return FALSE);
for (ci = 0, compptr = cinfo->comp_info; ci < cinfo->num_components;
ci++, compptr++) {
if (cc == compptr->component_id)
goto id_found;
}
ERREXIT1(cinfo, JERR_BAD_COMPONENT_ID, cc);
id_found:
cinfo->cur_comp_info[i] = compptr;
compptr->dc_tbl_no = (c >> 4) & 15;
compptr->ac_tbl_no = (c ) & 15;
TRACEMS3(cinfo, 1, JTRC_SOS_COMPONENT, cc,
compptr->dc_tbl_no, compptr->ac_tbl_no);
}
/* Collect the additional scan parameters Ss, Se, Ah/Al. */
INPUT_BYTE(cinfo, c, return FALSE);
cinfo->Ss = c;
INPUT_BYTE(cinfo, c, return FALSE);
cinfo->Se = c;
INPUT_BYTE(cinfo, c, return FALSE);
cinfo->Ah = (c >> 4) & 15;
cinfo->Al = (c ) & 15;
TRACEMS4(cinfo, 1, JTRC_SOS_PARAMS, cinfo->Ss, cinfo->Se,
cinfo->Ah, cinfo->Al);
/* Prepare to scan data & restart markers */
cinfo->marker->next_restart_num = 0;
/* Count another SOS marker */
cinfo->input_scan_number++;
INPUT_SYNC(cinfo);
return TRUE;
}
/*{{{ read_freiburg_init(transform_info_ptr tinfo) {*/
METHODDEF void
read_freiburg_init(transform_info_ptr tinfo) {
struct read_freiburg_storage *local_arg=(struct read_freiburg_storage *)tinfo->methods->local_storage;
transform_argument *args=tinfo->methods->arguments;
struct stat statbuf;
/*{{{ Process options*/
local_arg->fromepoch=(args[ARGS_FROMEPOCH].is_set ? args[ARGS_FROMEPOCH].arg.i : 1);
local_arg->epochs=(args[ARGS_EPOCHS].is_set ? args[ARGS_EPOCHS].arg.i : -1);
/*}}} */
local_arg->channelnames=NULL;
local_arg->uV_per_bit=NULL;
growing_buf_init(&local_arg->segment_table); /* This sets buffer_start=NULL */
local_arg->nr_of_channels=0;
if (args[ARGS_CONTINUOUS].is_set) {
/*{{{ Open a continuous (sleep, Bernd Tritschler) file*/
FILE *infile;
local_arg->in_channels= &sleep_channels[0];
if (stat(args[ARGS_IFILE].arg.s, &statbuf)!= 0 || !S_ISREG(statbuf.st_mode)) {
/* File does not exist or isn't a regular file: Try BT format */
#ifdef __GNUC__
char co_name[strlen(args[ARGS_IFILE].arg.s)+4];
char coa_name[strlen(args[ARGS_IFILE].arg.s)+5];
#else
char co_name[MAX_PATHLEN];
char coa_name[MAX_PATHLEN];
#endif
char coa_buf[MAX_COALINE];
FILE *coafile;
strcpy(co_name, args[ARGS_IFILE].arg.s); strcat(co_name, ".co");
if((infile=fopen(co_name,"rb"))==NULL) {
ERREXIT1(tinfo->emethods, "read_freiburg_init: Can't open file %s\n", MSGPARM(co_name));
}
local_arg->infile=infile;
if (args[ARGS_REPAIR_OFFSET].is_set) {
fseek(infile, args[ARGS_REPAIR_OFFSET].arg.i, SEEK_SET);
} else {
if (read_struct((char *)&local_arg->btfile, sm_BT_file, infile)==0) {
ERREXIT1(tinfo->emethods, "read_freiburg_init: Header read error in file %s\n", MSGPARM(co_name));
}
# ifndef LITTLE_ENDIAN
change_byteorder((char *)&local_arg->btfile, sm_BT_file);
# endif
}
strcpy(coa_name, args[ARGS_IFILE].arg.s); strcat(coa_name, ".coa");
if((coafile=fopen(coa_name,"rb"))==NULL) {
TRACEMS1(tinfo->emethods, 0, "read_freiburg_init: No file %s found\n", MSGPARM(coa_name));
} else {
while (!feof(coafile)) {
Bool repeat;
fgets(coa_buf, MAX_COALINE-1, coafile);
do {
repeat=FALSE;
if (strncmp(coa_buf, "Channel_Table ", 14)==0) {
int havechannels=0, stringlength=0;
long tablepos=ftell(coafile);
char *innames;
while (!feof(coafile)) {
char *eol;
fgets(coa_buf, MAX_COALINE-1, coafile);
if (!isdigit(*coa_buf)) break;
if (strncmp(coa_buf, "0 0 ", 4)==0) {
/* Empty channel descriptors: Don't generate channelnames */
} else {
for (eol=coa_buf+strlen(coa_buf)-1; eol>=coa_buf && (*eol=='\n' || *eol=='\r'); eol--) *eol='\0';
/* This includes 1 for the zero at the end: */
stringlength+=strlen(strrchr(coa_buf, ' '));
}
havechannels++;
}
if (havechannels==0) continue; /* Channel table is unuseable */
local_arg->nr_of_channels=havechannels;
innames=NULL;
if ((stringlength!=0 &&
((local_arg->channelnames=(char **)malloc(havechannels*sizeof(char *)))==NULL ||
(innames=(char *)malloc(stringlength))==NULL)) ||
(local_arg->uV_per_bit=(float *)malloc(havechannels*sizeof(float)))==NULL) {
ERREXIT(tinfo->emethods, "read_freiburg_init: Error allocating .coa memory\n");
}
fseek(coafile, tablepos, SEEK_SET);
havechannels=0;
while (!feof(coafile)) {
char *eol;
fgets(coa_buf, MAX_COALINE-1, coafile);
if (!isdigit(*coa_buf)) break;
for (eol=coa_buf+strlen(coa_buf)-1; eol>=coa_buf && (*eol=='\n' || *eol=='\r'); eol--) *eol='\0';
if (innames!=NULL) {
strcpy(innames, strrchr(coa_buf, ' ')+1);
local_arg->channelnames[havechannels]=innames;
innames+=strlen(innames)+1;
}
/* The sensitivity in .coa files is given as nV/Bit */
local_arg->uV_per_bit[havechannels]=atoi(strchr(coa_buf, ' ')+1)/1000.0;
if (local_arg->uV_per_bit[havechannels]==0.0) {
local_arg->uV_per_bit[havechannels]=0.086;
TRACEMS1(tinfo->emethods, 1, "read_freiburg_init: Sensitivity for channel %d set to 86 nV/Bit\n", MSGPARM(havechannels));
}
havechannels++;
}
repeat=TRUE;
} else if (strncmp(coa_buf, SEGMENT_TABLE_STRING, strlen(SEGMENT_TABLE_STRING))==0) {
long current_offset=0;
char *inbuf=coa_buf;
Bool havesomething=FALSE;
growing_buf_allocate(&local_arg->segment_table, 0);
while (!feof(coafile)) {
int const nextchar=fgetc(coafile);
if (nextchar=='\r' || nextchar=='\n' || nextchar==' ') {
if (havesomething) {
*inbuf = '\0';
current_offset+=atoi(coa_buf);
growing_buf_append(&local_arg->segment_table, (char *)¤t_offset, sizeof(long));
inbuf=coa_buf;
havesomething=FALSE;
}
if (nextchar=='\n') break;
} else {
*inbuf++ = nextchar;
havesomething=TRUE;
}
}
repeat=FALSE;
}
} while (repeat);
}
fclose(coafile);
if (local_arg->uV_per_bit==NULL) {
TRACEMS1(tinfo->emethods, 0, "read_freiburg_init: No channel table found in file %s\n", MSGPARM(coa_name));
}
if (local_arg->segment_table.buffer_start==NULL) {
TRACEMS1(tinfo->emethods, 0, "read_freiburg_init: No segment table found in file %s\n", MSGPARM(coa_name));
}
/* Determine the exact number of points in file: Start with the previous
* segment and add the last segment. */
fstat(fileno(infile),&statbuf);
//printf("File size is %ld\n", statbuf.st_size);
//printf("Last segment (EOF) at %ld\n", ((long *)local_arg->segment_table.buffer_start)[local_arg->segment_table.current_length/sizeof(long)-1]);
while (local_arg->segment_table.current_length>=1 && ((long *)local_arg->segment_table.buffer_start)[local_arg->segment_table.current_length/sizeof(long)-1]>=statbuf.st_size) {
//printf("%ld - Removing last segment!\n", ((long *)local_arg->segment_table.buffer_start)[local_arg->segment_table.current_length/sizeof(long)-1]);
local_arg->segment_table.current_length--;
}
/* Size without the last segment */
tinfo->points_in_file=(local_arg->segment_table.current_length/sizeof(long)-1)*SEGMENT_LENGTH;
/* Count the points in the last segment */
{
array myarray;
int length_of_last_segment=0;
myarray.element_skip=tinfo->itemsize=1;
myarray.nr_of_vectors=1;
myarray.nr_of_elements=local_arg->nr_of_channels;
if (array_allocate(&myarray)==NULL) {
ERREXIT(tinfo->emethods, "read_freiburg_init: Error allocating myarray\n");
}
fseek(infile, ((long *)local_arg->segment_table.buffer_start)[local_arg->segment_table.current_length/sizeof(long)-1], SEEK_SET);
//printf("Seeking to %ld\n", ((long *)local_arg->segment_table.buffer_start)[local_arg->segment_table.current_length/sizeof(long)-1]);
tinfo->nr_of_channels=local_arg->nr_of_channels; /* This is used by freiburg_get_segment_init! */
freiburg_get_segment_init(tinfo);
while (freiburg_get_segment(tinfo, &myarray)==0) length_of_last_segment++;
freiburg_get_segment_free(tinfo);
tinfo->points_in_file+=length_of_last_segment;
TRACEMS1(tinfo->emethods, 1, "read_freiburg_init: Last segment has %ld points\n",length_of_last_segment);
array_free(&myarray);
}
}
if (local_arg->channelnames==NULL && local_arg->btfile.text[0]=='\0') {
local_arg->in_channels= &goeppi_channels[0];
TRACEMS(tinfo->emethods, 0, "read_freiburg_init: Assuming Goeppingen style setup!\n");
}
local_arg->continuous_type=SLEEP_BT_TYPE;
TRACEMS(tinfo->emethods, 1, "read_freiburg_init: Opened file in BT format\n");
} else {
if((infile=fopen(args[ARGS_IFILE].arg.s,"rb"))==NULL) {
ERREXIT1(tinfo->emethods, "read_freiburg_init: Can't open file %s\n", MSGPARM(args[ARGS_IFILE].arg.s));
}
if (args[ARGS_REPAIR_OFFSET].is_set) {
fseek(infile, args[ARGS_REPAIR_OFFSET].arg.i, SEEK_SET);
} else {
if (read_struct((char *)&local_arg->btfile, sm_BT_file, infile)==0) {
ERREXIT1(tinfo->emethods, "read_freiburg_init: Header read error in file %s\n", MSGPARM(args[ARGS_IFILE].arg.s));
}
# ifdef LITTLE_ENDIAN
change_byteorder((char *)&local_arg->btfile, sm_BT_file);
# endif
}
local_arg->continuous_type=SLEEP_KL_TYPE;
/* Year and day are swapped in KL format with respect to BT format... */
{short buf=local_arg->btfile.start_year; local_arg->btfile.start_year=local_arg->btfile.start_day; local_arg->btfile.start_day=buf;}
/* Well, sometimes or most of the time, in KL files the sampling interval
* was not set correctly... */
if (!args[ARGS_SFREQ].is_set && local_arg->btfile.sampling_interval_us!=9765 && local_arg->btfile.sampling_interval_us!=9766) {
TRACEMS1(tinfo->emethods, 0, "read_freiburg_init: sampling_interval_us was %d, corrected!\n", MSGPARM(local_arg->btfile.sampling_interval_us));
local_arg->btfile.sampling_interval_us=9766;
}
TRACEMS(tinfo->emethods, 1, "read_freiburg_init: Opened file in KL format\n");
}
if (args[ARGS_REPAIR_CHANNELS].is_set) local_arg->btfile.nr_of_channels=args[ARGS_REPAIR_CHANNELS].arg.i;
tinfo->nr_of_channels=local_arg->btfile.nr_of_channels;
if (tinfo->nr_of_channels<=0 || tinfo->nr_of_channels>MAX_NUMBER_OF_CHANNELS_IN_EP) {
ERREXIT1(tinfo->emethods, "read_freiburg_init: Impossible: %d channels?\n", MSGPARM(tinfo->nr_of_channels));
}
if (local_arg->nr_of_channels==0) {
local_arg->nr_of_channels=tinfo->nr_of_channels;
} else {
if (local_arg->nr_of_channels!=tinfo->nr_of_channels) {
ERREXIT2(tinfo->emethods, "read_freiburg_init: Setup has %d channels, but the file has %d!\n", MSGPARM(local_arg->nr_of_channels), MSGPARM(tinfo->nr_of_channels));
}
}
local_arg->sfreq=(args[ARGS_SFREQ].is_set ? args[ARGS_SFREQ].arg.d : 1.0e6/local_arg->btfile.sampling_interval_us);
tinfo->sfreq=local_arg->sfreq;
if (tinfo->sfreq<=0.0 || tinfo->sfreq>MAX_POSSIBLE_SFREQ) {
ERREXIT1(tinfo->emethods, "read_freiburg_init: Impossible: sfreq=%gHz?\n", MSGPARM(tinfo->sfreq));
}
/*{{{ Parse arguments that can be in seconds*/
tinfo->nr_of_points=gettimeslice(tinfo, args[ARGS_NCHANNELS].arg.s);
if (tinfo->nr_of_points<=0) {
/* Read the whole file as one epoch */
TRACEMS1(tinfo->emethods, 1, "read_freiburg_init: Reading %ld points\n",tinfo->points_in_file);
tinfo->nr_of_points=tinfo->points_in_file;
}
local_arg->offset=(args[ARGS_OFFSET].is_set ? gettimeslice(tinfo, args[ARGS_OFFSET].arg.s) : 0);
local_arg->epochlength=tinfo->nr_of_points;
/*}}} */
tinfo->beforetrig= -local_arg->offset;
tinfo->aftertrig=tinfo->nr_of_points+local_arg->offset;
/*}}} */
} else {
local_arg->in_channels= &freiburg_channels[0];
local_arg->current_trigger=0;
if (stat(args[ARGS_IFILE].arg.s, &statbuf)!=0) {
ERREXIT1(tinfo->emethods, "read_freiburg_init: Can't stat file %s\n", MSGPARM(args[ARGS_IFILE].arg.s));
}
local_arg->nr_of_channels=atoi(args[ARGS_NCHANNELS].arg.s);
/* average mode if the name does not belong to a directory */
local_arg->average_mode= !S_ISDIR(statbuf.st_mode);
tinfo->nr_of_channels=MAX_NUMBER_OF_CHANNELS_IN_EP;
}
freiburg_get_segment_init(tinfo);
local_arg->current_point=0;
tinfo->methods->init_done=TRUE;
}
/*{{{ write_synamps_init(transform_info_ptr tinfo) {*/
METHODDEF void
write_synamps_init(transform_info_ptr tinfo) {
struct write_synamps_storage *local_arg=(struct write_synamps_storage *)tinfo->methods->local_storage;
transform_argument *args=tinfo->methods->arguments;
double xmin, xmax, ymin, ymax;
int NoOfChannels=tinfo->nr_of_channels;
int channel;
growing_buf_init(&local_arg->triggers);
local_arg->output_format=(args[ARGS_OUTPUTFORMAT].is_set ? (enum output_formats)args[ARGS_OUTPUTFORMAT].arg.i : FORMAT_EEGFILE);
local_arg->SCAN=fopen(args[ARGS_OFILE].arg.s, "r+b");
if (!args[ARGS_APPEND].is_set || local_arg->SCAN==NULL) { /* target does not exist*/
/*{{{ Create file*/
if (local_arg->SCAN!=NULL) fclose(local_arg->SCAN);
/*{{{ Calculate the span in x-y channel positions*/
xmin=ymin= FLT_MAX;
xmax=ymax= -FLT_MAX;
for (channel=0; channel<tinfo->nr_of_channels; channel++) {
const double this_x=tinfo->probepos[3*channel], this_y=tinfo->probepos[3*channel+1];
if (this_x>xmax) xmax=this_x;
if (this_x<xmin) xmin=this_x;
if (this_y>ymax) ymax=this_y;
if (this_y<ymin) ymin=this_y;
}
if (xmax==xmin) {
xmax+=0.5;
xmin-=0.5;
}
if (ymax==ymin) {
ymax+=0.5;
ymin-=0.5;
}
/*}}} */
if ((local_arg->SCAN=fopen(args[ARGS_OFILE].arg.s, "wb"))==NULL) {
ERREXIT1(tinfo->emethods, "write_synamps_init: Can't open %s\n", MSGPARM(args[ARGS_OFILE].arg.s));
}
/*{{{ Many settings, taken from example files...*/
strcpy(local_arg->EEG.rev, "Version 3.0");
local_arg->EEG.AdditionalFiles=local_arg->EEG.NextFile=local_arg->EEG.PrevFile=0;
switch (local_arg->output_format) {
case FORMAT_EEGFILE:
local_arg->EEG.review = 1;
local_arg->EEG.savemode=NSM_EEGF;
local_arg->EEG.type = NTY_EPOCHED;
local_arg->EEG.ContinousType=0;
local_arg->EEG.nsweeps=local_arg->EEG.compsweeps=local_arg->EEG.acceptcnt=0;
break;
case FORMAT_CNTFILE:
local_arg->EEG.review = 1;
local_arg->EEG.savemode=NSM_CONT;
local_arg->EEG.type = 0;
local_arg->EEG.ContinousType=NST_SYNAMPS-NST_CONT0;
local_arg->EEG.nsweeps=1;
local_arg->EEG.compsweeps=local_arg->EEG.acceptcnt=0;
break;
case FORMAT_AVGFILE:
local_arg->EEG.review = 0;
local_arg->EEG.savemode=NSM_AVGD;
local_arg->EEG.type = NTY_AVERAGED;
local_arg->EEG.ContinousType=0;
local_arg->EEG.nsweeps=local_arg->EEG.compsweeps=local_arg->EEG.acceptcnt=(tinfo->nrofaverages>0 ? tinfo->nrofaverages : 1);
break;
}
/* Since the comment can be of arbitrary length and thus also larger than the
* rest of the header, we should limit ourselves to the size of the id field */
strncpy(local_arg->EEG.id, tinfo->comment, sizeof(local_arg->EEG.id));
/* The date is coded in the comment, and read_synamps appends the date and time
* from the corresponding fields and the contents of the id field, so that
* the comment2time reader could be confused by the two date/time fields if we
* would not somehow invalidate remnants of the date field here... */
{char *slash;
while ((slash=strchr(local_arg->EEG.id, '/'))!=NULL) {
*slash='|';
}
}
strcpy(local_arg->EEG.oper, "Unspecified");
strcpy(local_arg->EEG.doctor, "Unspecified");
strcpy(local_arg->EEG.referral, "Unspecified");
strcpy(local_arg->EEG.hospital, "Unspecified");
strcpy(local_arg->EEG.patient, "Unspecified");
local_arg->EEG.age = 0;
local_arg->EEG.sex = 'U';
local_arg->EEG.hand = 'U';
strcpy(local_arg->EEG.med, "Unspecified");
strcpy(local_arg->EEG.category, "Unspecified");
strcpy(local_arg->EEG.state, "Unspecified");
strcpy(local_arg->EEG.label, "Unspecified");
{short dd, mm, yy, yyyy, hh, mi, ss;
if (comment2time(tinfo->comment, &dd, &mm, &yy, &yyyy, &hh, &mi, &ss)) {
char buffer[16]; /* Must be long enough to fit date (10) and time (12) +1 */
/* This is necessary because the date field was devised for 2-digit years.
* With 4-digit years it uses all 10 bytes and the trailing zero
* does not fit in any more. */
snprintf(buffer, 16, "%02d/%02d/%04d", mm, dd, yyyy);
strncpy(local_arg->EEG.date, buffer, sizeof(local_arg->EEG.date));
snprintf(buffer, 16, "%02d:%02d:%02d", hh, mi, ss);
strncpy(local_arg->EEG.time, buffer, sizeof(local_arg->EEG.time));
}
}
local_arg->EEG.rejectcnt = 0;
local_arg->EEG.pnts=(tinfo->data_type==FREQ_DATA ? tinfo->nroffreq : tinfo->nr_of_points);
local_arg->EEG.nchannels=NoOfChannels;
local_arg->EEG.avgupdate=1;
local_arg->EEG.domain=(tinfo->data_type==FREQ_DATA ? 1 : 0);
local_arg->EEG.variance=0;
local_arg->EEG.rate=(uint16_t)rint(tinfo->sfreq);
if (tinfo->data_type==FREQ_DATA) {
/* I know that this field is supposed to contain the taper window size in %,
but we need some way to store basefreq and 'rate' is only integer... */
local_arg->EEG.SpectWinLength=tinfo->basefreq;
}
if (local_arg->EEG.rate==0) {
local_arg->EEG.rate=1;
TRACEMS(tinfo->emethods, 0, "write_synamps_init: Rate was zero, corrected to 1!\n");
}
local_arg->EEG.scale=3.4375; /* This is a common sensitivity factor, used if sensitivities for channels are zero */
local_arg->EEG.veogcorrect=0;
local_arg->EEG.heogcorrect=0;
local_arg->EEG.aux1correct=0;
local_arg->EEG.aux2correct=0;
local_arg->EEG.veogtrig=15; /* Trigger threshold in percent of the maximum */
local_arg->EEG.heogtrig=10;
local_arg->EEG.aux1trig=10;
local_arg->EEG.aux2trig=10;
local_arg->EEG.veogchnl=find_channel_number(tinfo, "VEOG");
local_arg->EEG.heogchnl=find_channel_number(tinfo, "HEOG");
local_arg->EEG.veogdir=0; /* 0=positive, 1=negative */
local_arg->EEG.veog_n=10; /* "Number of points per waveform", really: minimum acceptable # averages */
local_arg->EEG.heog_n=10;
local_arg->EEG.veogmaxcnt=(int16_t)rint(0.3*tinfo->sfreq); /* "Number of observations per point", really: event window size in points */
local_arg->EEG.heogmaxcnt=(int16_t)rint(0.5*tinfo->sfreq);
local_arg->EEG.AmpSensitivity=10; /* External Amplifier gain */
local_arg->EEG.baseline=0;
local_arg->EEG.reject=0;
local_arg->EEG.trigtype=2; /* 2=Port */
local_arg->EEG.trigval=255; /* Hold */
local_arg->EEG.dir=0; /* Invert (negative up)=0 */
local_arg->EEG.dispmin= -1; /* displayed y range */
local_arg->EEG.dispmax= +1;
local_arg->EEG.DisplayXmin=local_arg->EEG.AutoMin=local_arg->EEG.rejstart=local_arg->EEG.offstart=local_arg->EEG.xmin= -tinfo->beforetrig/tinfo->sfreq;
local_arg->EEG.DisplayXmax=local_arg->EEG.AutoMax=local_arg->EEG.rejstop=local_arg->EEG.offstop=local_arg->EEG.xmax= tinfo->aftertrig/tinfo->sfreq;
local_arg->EEG.zmin=0.0;
local_arg->EEG.zmax=0.1;
strcpy(local_arg->EEG.ref, "A1-A2");
strcpy(local_arg->EEG.screen, "--------");
local_arg->EEG.CalMode=2;
local_arg->EEG.CalMethod=0;
local_arg->EEG.CalUpdate=1;
local_arg->EEG.CalBaseline=0;
local_arg->EEG.CalSweeps=5;
local_arg->EEG.CalAttenuator=1;
local_arg->EEG.CalPulseVolt=1;
local_arg->EEG.CalPulseStart=0;
local_arg->EEG.CalPulseStop=0;
local_arg->EEG.CalFreq=10;
strcpy(local_arg->EEG.taskfile, "--------");
strcpy(local_arg->EEG.seqfile, "--------"); /* Otherwise tries to read a seqfile */
local_arg->EEG.HeadGain=150;
local_arg->EEG.FspFValue=2.5;
local_arg->EEG.FspBlockSize=200;
local_arg->EEG.fratio=1.0;
local_arg->EEG.minor_rev=12; /* Necessary ! Otherwise a different file structure is assumed... */
local_arg->EEG.eegupdate=1;
local_arg->EEG.xscale=local_arg->EEG.yscale=0;
local_arg->EEG.xsize=40;
local_arg->EEG.ysize=20;
local_arg->EEG.ACmode=0;
local_arg->EEG.XScaleValue=XSCALEVALUE;
local_arg->EEG.XScaleInterval=XSCALEINTERVAL;
local_arg->EEG.YScaleValue=YSCALEVALUE;
local_arg->EEG.YScaleInterval=YSCALEINTERVAL;
local_arg->EEG.ScaleToolX1=20;
local_arg->EEG.ScaleToolY1=170;
local_arg->EEG.ScaleToolX2=23.1535;
local_arg->EEG.ScaleToolY2=153.87;
local_arg->EEG.port=715;
local_arg->EEG.NumSamples=0;
local_arg->EEG.FilterFlag=0;
local_arg->EEG.LowCutoff=4;
local_arg->EEG.LowPoles=2;
local_arg->EEG.HighCutoff=50;
local_arg->EEG.HighPoles=2;
local_arg->EEG.FilterType=3;
local_arg->EEG.FilterDomain=1;
local_arg->EEG.SnrFlag=0;
local_arg->EEG.CoherenceFlag=0;
local_arg->EEG.ContinousSeconds=4;
local_arg->EEG.ChannelOffset=sizeof(int16_t);
local_arg->EEG.AutoCorrectFlag=0;
local_arg->EEG.DCThreshold='F';
/*}}} */
/*{{{ Write SETUP structure*/
# ifndef LITTLE_ENDIAN
change_byteorder((char *)&local_arg->EEG, sm_SETUP);
# endif
write_struct((char *)&local_arg->EEG, sm_SETUP, local_arg->SCAN);
# ifndef LITTLE_ENDIAN
change_byteorder((char *)&local_arg->EEG, sm_SETUP);
# endif
/*}}} */
if ((local_arg->Channels=(ELECTLOC *)calloc(NoOfChannels,sizeof(ELECTLOC)))==NULL) {
ERREXIT(tinfo->emethods, "write_synamps_init: Error allocating Channels list\n");
}
for (channel=0; channel<NoOfChannels; channel++) {
/*{{{ Settings in the channel structure*/
strncpy(local_arg->Channels[channel].lab, tinfo->channelnames[channel],sizeof(local_arg->Channels[channel].lab));
local_arg->Channels[channel].reference=0;
local_arg->Channels[channel].skip=0;
local_arg->Channels[channel].reject=0;
local_arg->Channels[channel].display=1;
local_arg->Channels[channel].bad=0;
local_arg->Channels[channel].n=(local_arg->output_format==FORMAT_AVGFILE ? local_arg->EEG.acceptcnt : (local_arg->output_format==FORMAT_CNTFILE ? 0 : 1));
local_arg->Channels[channel].avg_reference=0;
local_arg->Channels[channel].ClipAdd=0;
local_arg->Channels[channel].x_coord= (tinfo->probepos[3*channel ]-xmin)/(xmax-xmin)*RANGE_TO_COVER+XOFFSET;
local_arg->Channels[channel].y_coord=((ymax-tinfo->probepos[3*channel+1])/(ymax-ymin)*RANGE_TO_COVER+YOFFSET)/3;
local_arg->Channels[channel].veog_wt=0;
local_arg->Channels[channel].veog_std=0;
local_arg->Channels[channel].heog_wt=0;
local_arg->Channels[channel].heog_std=0;
local_arg->Channels[channel].baseline=0;
local_arg->Channels[channel].Filtered=0;
local_arg->Channels[channel].sensitivity=204.8/args[ARGS_CONVFACTOR].arg.d; /* This arranges for conv_factor to act as the expected product before integer truncation */
local_arg->Channels[channel].Gain=5;
local_arg->Channels[channel].HiPass=0; /* 0=DC */
local_arg->Channels[channel].LoPass=4;
local_arg->Channels[channel].Page=0;
local_arg->Channels[channel].Size=0;
local_arg->Channels[channel].Impedance=0;
local_arg->Channels[channel].PhysicalChnl=channel; /* Channel mapping */
local_arg->Channels[channel].Rectify=0;
local_arg->Channels[channel].calib=1.0;
/*}}} */
/*{{{ Write ELECTLOC struct*/
# ifndef LITTLE_ENDIAN
change_byteorder((char *)&local_arg->Channels[channel], sm_ELECTLOC);
# endif
write_struct((char *)&local_arg->Channels[channel], sm_ELECTLOC, local_arg->SCAN);
# ifndef LITTLE_ENDIAN
change_byteorder((char *)&local_arg->Channels[channel], sm_ELECTLOC);
# endif
/*}}} */
}
local_arg->SizeofHeader = ftell(local_arg->SCAN);
TRACEMS2(tinfo->emethods, 1, "write_synamps_init: Creating file %s, format `%s'\n", MSGPARM(args[ARGS_OFILE].arg.s), MSGPARM(neuroscan_subtype_names[NEUROSCAN_SUBTYPE(&local_arg->EEG)]));
/*}}} */
} else {
/*{{{ Append to file*/
enum NEUROSCAN_SUBTYPES SubType;
if (read_struct((char *)&local_arg->EEG, sm_SETUP, local_arg->SCAN)==0) {
ERREXIT(tinfo->emethods, "write_synamps_init: Can't read file header.\n");
}
# ifndef LITTLE_ENDIAN
change_byteorder((char *)&local_arg->EEG, sm_SETUP);
# endif
NoOfChannels = local_arg->EEG.nchannels;
/*{{{ Allocate channel header*/
if ((local_arg->Channels=(ELECTLOC *)malloc(NoOfChannels*sizeof(ELECTLOC)))==NULL) {
ERREXIT(tinfo->emethods, "write_synamps_init: Error allocating Channels list\n");
}
/*}}} */
for (channel=0; channel<NoOfChannels; channel++) {
if (read_struct((char *)&local_arg->Channels[channel], sm_ELECTLOC, local_arg->SCAN)==0) {
ERREXIT(tinfo->emethods, "write_synamps_init: Can't read channel headers.\n");
}
# ifndef LITTLE_ENDIAN
change_byteorder((char *)&local_arg->Channels[channel], sm_ELECTLOC);
# endif
}
local_arg->SizeofHeader = ftell(local_arg->SCAN);
SubType=NEUROSCAN_SUBTYPE(&local_arg->EEG);
switch (SubType) {
case NST_EPOCHS:
if (local_arg->output_format!=FORMAT_EEGFILE) {
TRACEMS(tinfo->emethods, 0, "write_synamps_init: Appending to epoch file, discarding option -c\n");
local_arg->output_format=FORMAT_EEGFILE;
}
fseek(local_arg->SCAN, 0, SEEK_END);
break;
case NST_CONTINUOUS:
case NST_SYNAMPS: {
TEEG TagType;
EVENT1 event;
if (local_arg->output_format!=FORMAT_CNTFILE) {
TRACEMS(tinfo->emethods, 0, "write_synamps_init: Appending to continuous file, assuming option -c\n");
local_arg->output_format=FORMAT_CNTFILE;
}
fseek(local_arg->SCAN, local_arg->EEG.EventTablePos, SEEK_SET);
/* Here we face two evils in one header: Coding enums as chars and
* allowing longs at odd addresses. Well... */
if (1==read_struct((char *)&TagType, sm_TEEG, local_arg->SCAN)) {
# ifndef LITTLE_ENDIAN
change_byteorder((char *)&TagType, sm_TEEG);
# endif
if (TagType.Teeg==TEEG_EVENT_TAB1) {
/*{{{ Read the event table*/
int tag;
int const ntags=TagType.Size/sm_EVENT1[0].offset; /* sm_EVENT1[0].offset is sizeof(EVENT1) in the file. */
for (tag=0; tag<ntags; tag++) {
if (1!=read_struct((char *)&event, sm_EVENT1, local_arg->SCAN)) {
ERREXIT(tinfo->emethods, "write_synamps_init: Can't read an event table entry.\n");
break;
}
# ifndef LITTLE_ENDIAN
change_byteorder((char *)&event, sm_EVENT1);
# endif
{
int const TrigVal=event.StimType &0xff;
int const KeyBoard=event.KeyBoard&0xf;
int const KeyPad=Event_KeyPad_value(event);
int const Accept=Event_Accept_value(event);
int code=TrigVal-KeyPad+neuroscan_accept_translation[Accept];
if (code==0) {
code= -((KeyBoard+1)<<4);
}
push_trigger(&local_arg->triggers,offset2point(tinfo, event.Offset),code,NULL);
}
}
/*}}} */
} else {
ERREXIT(tinfo->emethods, "write_synamps_init: Type 2 events are not yet supported.\n");
}
} else {
ERREXIT(tinfo->emethods, "write_synamps_init: Can't read the event table header.\n");
}
fseek(local_arg->SCAN, local_arg->EEG.EventTablePos, SEEK_SET);
}
break;
default:
ERREXIT1(tinfo->emethods, "write_synamps: Cannot append to file type `%s'\n", MSGPARM(neuroscan_subtype_names[SubType]));
break;
}
/* Conformance to the incoming epochs is checked in write_synamps */
TRACEMS1(tinfo->emethods, 1, "write_synamps_init: Appending to file %s\n", MSGPARM(args[ARGS_OFILE].arg.s));
/*}}} */
}
tinfo->methods->init_done=TRUE;
}
METHODDEF DATATYPE *
read_freiburg(transform_info_ptr tinfo) {
struct read_freiburg_storage *local_arg=(struct read_freiburg_storage *)tinfo->methods->local_storage;
transform_argument *args=tinfo->methods->arguments;
struct freiburg_channels_struct *in_channels=local_arg->in_channels;
array myarray;
FILE *infile;
int i, point, channel;
int trial_not_accepted;
long length_of_data;
short header[FREIBURG_HEADER_LENGTH/sizeof(short)];
char const *last_sep=strrchr(args[ARGS_IFILE].arg.s, PATHSEP);
char const *last_component=(last_sep==NULL ? args[ARGS_IFILE].arg.s : last_sep+1);
char comment[MAX_COMMENTLEN];
tinfo->nrofaverages=1;
if (args[ARGS_CONTINUOUS].is_set) {
/*{{{ Read an epoch from a continuous file*/
infile=local_arg->infile;
if (local_arg->epochs--==0) return NULL;
/*{{{ Configure myarray*/
myarray.element_skip=tinfo->itemsize=1;
myarray.nr_of_vectors=tinfo->nr_of_points=local_arg->epochlength;
myarray.nr_of_elements=tinfo->nr_of_channels=local_arg->nr_of_channels;
if (array_allocate(&myarray)==NULL) {
ERREXIT(tinfo->emethods, "read_freiburg: Error allocating data\n");
}
tinfo->multiplexed=TRUE;
/*}}} */
do {
do {
if (local_arg->segment_table.buffer_start!=NULL && local_arg->current_point%SEGMENT_LENGTH==0) {
int const segment=local_arg->current_point/SEGMENT_LENGTH;
long const nr_of_segments=local_arg->segment_table.current_length/sizeof(long);
if (segment>=nr_of_segments) {
array_free(&myarray);
return NULL;
}
fseek(infile, ((long *)local_arg->segment_table.buffer_start)[segment], SEEK_SET);
local_arg->no_last_values=TRUE;
}
if (freiburg_get_segment(tinfo, &myarray)!=0) {
array_free(&myarray);
return NULL;
}
} while (myarray.message!=ARRAY_ENDOFSCAN);
} while (--local_arg->fromepoch>0);
snprintf(comment, MAX_COMMENTLEN, "%s %s %02d/%02d/%04d,%02d:%02d:%02d", (local_arg->continuous_type==SLEEP_BT_TYPE ? "sleep_BT" : "sleep_KL"), last_component, local_arg->btfile.start_month, local_arg->btfile.start_day, local_arg->btfile.start_year, local_arg->btfile.start_hour, local_arg->btfile.start_minute, local_arg->btfile.start_second);
tinfo->sfreq=local_arg->sfreq;
/*}}} */
} else
/*{{{ Read an epoch from a single (epoched or averaged) file*/
do { /* Return here if trial was not accepted */
trial_not_accepted=FALSE;
if (local_arg->epochs--==0 || (local_arg->average_mode && local_arg->current_trigger>=1)) return NULL;
if (local_arg->average_mode) {
/*{{{ Prepare reading an averaged file*/
if((infile=fopen(args[ARGS_IFILE].arg.s,"rb"))==NULL) {
ERREXIT1(tinfo->emethods, "read_freiburg: Can't open file %s\n", MSGPARM(args[ARGS_IFILE].arg.s));
}
fseek(infile, 0, SEEK_END);
length_of_data=ftell(infile)-FREIBURG_HEADER_LENGTH;
local_arg->current_trigger++;
snprintf(comment, MAX_COMMENTLEN, "Freiburg-avg %s", last_component);
/*}}} */
} else {
/*{{{ Build pathname of the single trial to read*/
/* A directory name was given. */
char const * const expnumber=args[ARGS_IFILE].arg.s+strlen(args[ARGS_IFILE].arg.s)-2;
#ifdef __GNUC__
#define NEWFILENAME_SIZE (strlen(args[ARGS_IFILE].arg.s)+strlen(last_component)+20)
#else
#define NEWFILENAME_SIZE MAX_PATHLEN
#endif
char newfilename[NEWFILENAME_SIZE];
do { /* Files from which only the parameter part exists are rejected */
int div100=local_arg->current_trigger/100, mod100=local_arg->current_trigger%100;
snprintf(newfilename, NEWFILENAME_SIZE, "%s%c%s%02d%c%c%s%02d%02d", args[ARGS_IFILE].arg.s, PATHSEP, last_component, div100, PATHSEP, tolower(expnumber[-1]), expnumber, div100, mod100);
TRACEMS1(tinfo->emethods, 1, "read_freiburg: Constructed filename %s\n", MSGPARM(newfilename));
if((infile=fopen(newfilename,"rb"))==NULL) {
if (local_arg->current_trigger==0) {
ERREXIT1(tinfo->emethods, "read_freiburg: Can't open file %s\n", MSGPARM(newfilename));
} else {
return NULL;
}
}
fseek(infile, 0, SEEK_END);
length_of_data=ftell(infile)-FREIBURG_HEADER_LENGTH;
local_arg->current_trigger++;
} while (length_of_data==0 || --local_arg->fromepoch>0);
snprintf(comment, MAX_COMMENTLEN, "Freiburg-raw %s", last_component);
/*}}} */
}
/*{{{ Read the 64-Byte header*/
fseek(infile, 0, SEEK_SET);
fread(header, 1, FREIBURG_HEADER_LENGTH, infile);
for (i=0; i<18; i++) {
# ifdef LITTLE_ENDIAN
Intel_int16((uint16_t *)&header[i]);
# endif
TRACEMS2(tinfo->emethods, 3, "read_freiburg: Header %02d: %d\n", MSGPARM(i), MSGPARM(header[i]));
}
/*}}} */
if (local_arg->average_mode) {
if ((length_of_data/sizeof(short))%local_arg->nr_of_channels!=0) {
ERREXIT2(tinfo->emethods, "read_freiburg: length_of_data=%d does not fit with nr_of_channels=%d\n", MSGPARM(length_of_data), MSGPARM(local_arg->nr_of_channels));
}
tinfo->nr_of_points=(length_of_data/sizeof(short))/local_arg->nr_of_channels;
local_arg->sfreq=(args[ARGS_SFREQ].is_set ? args[ARGS_SFREQ].arg.d : 200.0); /* The most likely value */
} else {
local_arg->nr_of_channels=header[14];
/* Note: In a lot of experiments, one point MORE is available in the data
* than specified in the header, but this occurs erratically. We could only
* check for this during decompression, but that's probably too much fuss. */
tinfo->nr_of_points=header[16]/header[15];
local_arg->sfreq=(args[ARGS_SFREQ].is_set ? args[ARGS_SFREQ].arg.d : 1000.0/header[15]);
}
tinfo->sfreq=local_arg->sfreq;
/*{{{ Parse arguments that can be in seconds*/
local_arg->offset=(args[ARGS_OFFSET].is_set ? gettimeslice(tinfo, args[ARGS_OFFSET].arg.s) : 0);
/*}}} */
tinfo->beforetrig= -local_arg->offset;
tinfo->aftertrig=tinfo->nr_of_points+local_arg->offset;
/*{{{ Configure myarray*/
myarray.element_skip=tinfo->itemsize=1;
myarray.nr_of_vectors=tinfo->nr_of_points;
myarray.nr_of_elements=tinfo->nr_of_channels=local_arg->nr_of_channels;
if (array_allocate(&myarray)==NULL) {
ERREXIT(tinfo->emethods, "read_freiburg: Error allocating data\n");
}
tinfo->multiplexed=TRUE;
/*}}} */
fseek(infile, FREIBURG_HEADER_LENGTH, SEEK_SET);
if (local_arg->average_mode) {
/*{{{ Read averaged epoch*/
for (point=0; point<tinfo->nr_of_points; point++) {
#ifdef __GNUC__
short buffer[tinfo->nr_of_channels];
#else
short buffer[MAX_NR_OF_CHANNELS];
#endif
if ((int)fread(buffer, sizeof(short), tinfo->nr_of_channels, infile)!=tinfo->nr_of_channels) {
ERREXIT1(tinfo->emethods, "read_freiburg: Error reading data point %d\n", MSGPARM(point));
}
for (channel=0; channel<tinfo->nr_of_channels; channel++) {
# ifdef LITTLE_ENDIAN
Intel_int16((uint16_t *)&buffer[channel]);
# endif
array_write(&myarray, (DATATYPE)buffer[channel]);
}
}
/*}}} */
} else {
/*{{{ Read compressed single trial*/
# ifdef DISPLAY_ADJECTIVES
char *adjektiv_ende=strchr(((char *)header)+36, ' ');
if (adjektiv_ende!=NULL) *adjektiv_ende='\0';
printf("Single trial: nr_of_points=%d, nr_of_channels=%d, Adjektiv=%s\n", tinfo->nr_of_points, tinfo->nr_of_channels, ((char *)header)+36);
# endif
local_arg->infile=infile;
do {
if (freiburg_get_segment(tinfo, &myarray)!=0) {
TRACEMS1(tinfo->emethods, 0, "read_freiburg: Decompression out of bounds for trial %d - skipped\n", MSGPARM(local_arg->current_trigger-1));
array_free(&myarray);
trial_not_accepted=TRUE;
break;
}
} while (myarray.message!=ARRAY_ENDOFSCAN);
/*}}} */
}
fclose(infile);
} while (trial_not_accepted);
/*}}} */
/*{{{ Look for a Freiburg channel setup for this number of channels*/
/* Force create_channelgrid to really allocate the channel info anew.
* Otherwise, free_tinfo will free someone else's data ! */
tinfo->channelnames=NULL; tinfo->probepos=NULL;
if (local_arg->channelnames!=NULL) {
copy_channelinfo(tinfo, local_arg->channelnames, NULL);
} else {
while (in_channels->nr_of_channels!=0 && in_channels->nr_of_channels!=tinfo->nr_of_channels) in_channels++;
if (in_channels->nr_of_channels==0) {
TRACEMS1(tinfo->emethods, 1, "read_freiburg: Don't have a setup for %d channels.\n", MSGPARM(tinfo->nr_of_channels));
} else {
copy_channelinfo(tinfo, in_channels->channelnames, NULL);
}
}
create_channelgrid(tinfo); /* Create defaults for any missing channel info */
/*}}} */
if ((tinfo->comment=(char *)malloc(strlen(comment)+1))==NULL) {
ERREXIT(tinfo->emethods, "read_freiburg: Error allocating comment memory\n");
}
strcpy(tinfo->comment, comment);
if (local_arg->zero_idiotism_warned==FALSE && local_arg->zero_idiotism_encountered) {
TRACEMS(tinfo->emethods, 0, "read_freiburg: All-zero data points have been encountered and omitted!\n");
local_arg->zero_idiotism_warned=TRUE;
}
tinfo->z_label=NULL;
tinfo->tsdata=myarray.start;
tinfo->length_of_output_region=tinfo->nr_of_channels*tinfo->nr_of_points;
tinfo->leaveright=0;
tinfo->data_type=TIME_DATA;
return tinfo->tsdata;
}
