float monge_elkan_similarity(const char *str1, const char *str2) {
float ret;
affine_idx_cost_t *aff_idx_c = affine_gap_5_1();
sub_cost_t *sub_cost = sub_cost_5_3_min_3();
comp_idx_cost_t comp_cost = { .gap_cost = aff_idx_c, .sub_cost = sub_cost };
w_comp_idx_cost_t conf = { .win_size = 100, .comp_conf = &comp_cost };
ret = monge_elkan_similarity_custom(str1, str2, &conf);
free_affine_sub_cost(aff_idx_c);
free_sub_cost(sub_cost);
return (ret);
}
if (d[i][j] > max_so_far)
max_so_far = d[i][j];
}
}
return max_so_far;
}
float smith_waterman_gotoh(const char *str1, const char *str2) {
comp_idx_cost_t comp_cost = {
.gap_cost = affine_gap_5_1(),
.sub_cost = sub_cost_5_3_min_3()
};
w_comp_idx_cost_t conf = {
.win_size = 100,
.comp_conf = &comp_cost
};
return custom_smith_waterman_gotoh(str1, str2, &conf);
}
float custom_smith_waterman_gotoh_similarity(const char *str1, const char *str2, const void *v_conf) {
const w_comp_idx_cost_t *conf = v_conf;
