static void test_cov(){/*not good */ rand_t rstat; int seed=4; double r0=0.2; double dx=1./64; long N=1+1024; long nx=N; long ny=N; long nframe=1; seed_rand(&rstat, seed); map_t *atm=mapnew(nx, ny, dx,dx, NULL); cmat *atmhat=cnew((N+1)*3,(N+1)*3); dmat *atmhattot=dnew((N+1)*3,(N+1)*3); //cfft2plan(atmhat,-1); //cfft2plan(atmhat, 1); dset((dmat*)atm,1); cembedd(atmhat, (dmat*)atm, 0); cfft2(atmhat, -1); cabs22d(&atmhattot, 1, atmhat, 1); ccpd(&atmhat, atmhattot); cfft2i(atmhat, 1); cfftshift(atmhat); dmat *denom=dnew((N+1)*3,(N+1)*3); dmat *cov=dnew((N+1)*3,(N+1)*3); creal2d(&denom, 0, atmhat, 1); writebin(denom, "denom.bin"); dzero(atmhattot); for(long i=0; i<nframe; i++){ info("%ld of %ld\n", i, nframe); for(long j=0; j<nx*ny; j++){ atm->p[j]=randn(&rstat); } fractal_do((dmat*)atm, dx, r0,L0,ninit); /*mapwrite(atm, "atm_%ld.bin", i); */ cembedd(atmhat, (dmat*)atm, 0); cfft2(atmhat, -1); cabs22d(&atmhattot, 1, atmhat, 1); if(i==0 || (i+1)%10==0){ dscale(atmhattot, 1./(i+1)); ccpd(&atmhat, atmhattot); writebin(atmhattot, "atm_psf_%ld.bin",i+1); cfft2i(atmhat, 1); cfftshift(atmhat); creal2d(&cov, 0, atmhat, 1); for(long k=0; k<cov->nx*cov->ny; k++){ cov->p[k]/=denom->p[k]; } writebin(cov, "atm_cov_%ld.bin",i+1); } } }
/** Setup the detector transfer functions. See maos/setup_powfs.c */ static void setup_powfs_dtf(POWFS_S *powfs, const PARMS_S* parms){ const int npowfs=parms->maos.npowfs; for(int ipowfs=0; ipowfs<npowfs; ipowfs++){ const int ncomp=parms->maos.ncomp[ipowfs]; const int ncomp2=ncomp>>1; const int embfac=parms->maos.embfac[ipowfs]; const int pixpsa=parms->skyc.pixpsa[ipowfs]; const double pixtheta=parms->skyc.pixtheta[ipowfs]; const double blur=parms->skyc.pixblur[ipowfs]*pixtheta; const double e0=exp(-2*M_PI*M_PI*blur*blur); const double dxsa=parms->maos.dxsa[ipowfs]; const double pixoffx=parms->skyc.pixoffx[ipowfs]; const double pixoffy=parms->skyc.pixoffy[ipowfs]; const double pxo=-(pixpsa/2-0.5+pixoffx)*pixtheta; const double pyo=-(pixpsa/2-0.5+pixoffy)*pixtheta; loc_t *loc_ccd=mksqloc(pixpsa, pixpsa, pixtheta, pixtheta, pxo, pyo); powfs[ipowfs].dtf=mycalloc(parms->maos.nwvl,DTF_S); for(int iwvl=0; iwvl<parms->maos.nwvl; iwvl++){ const double wvl=parms->maos.wvl[iwvl]; const double dtheta=wvl/(dxsa*embfac); const double pdtheta=pixtheta*pixtheta/(dtheta*dtheta); const double du=1./(dtheta*ncomp); const double du2=du*du; const double dupth=du*pixtheta; cmat *nominal=cnew(ncomp,ncomp); //cfft2plan(nominal,-1); //cfft2plan(nominal,1); cmat* pn=nominal; const double theta=0; const double ct=cos(theta); const double st=sin(theta); for(int iy=0; iy<ncomp; iy++){ int jy=iy-ncomp2; for(int ix=0; ix<ncomp; ix++){ int jx=ix-ncomp2; double ir=ct*jx+st*jy; double ia=-st*jx+ct*jy; IND(pn,ix,iy)=sinc(ir*dupth)*sinc(ia*dupth) *pow(e0,ir*ir*du2)*pow(e0,ia*ia*du2) *pdtheta; } } if(parms->skyc.fnpsf1[ipowfs]){ warning("powfs %d has additional otf to be multiplied\n", ipowfs); dcell *psf1c=dcellread("%s", parms->skyc.fnpsf1[ipowfs]); dmat *psf1=NULL; if(psf1c->nx == 1){ psf1=dref(psf1c->p[0]); }else if(psf1c->nx==parms->maos.nwvl){ psf1=dref(psf1c->p[iwvl]); }else{ error("skyc.fnpsf1 has wrong dimension\n"); } dcellfree(psf1c); if(psf1->ny!=2){ error("skyc.fnpsf1 has wrong dimension\n"); } dmat *psf1x=dnew_ref(psf1->nx, 1, psf1->p); dmat *psf1y=dnew_ref(psf1->nx, 1, psf1->p+psf1->nx); dmat *psf2x=dnew(ncomp*ncomp, 1); for(int iy=0; iy<ncomp; iy++){ int jy=iy-ncomp2; for(int ix=0; ix<ncomp; ix++){ int jx=ix-ncomp2; psf2x->p[ix+iy*ncomp]=sqrt(jx*jx+jy*jy)*dtheta; } } info("powfs %d, iwvl=%d, dtheta=%g\n", ipowfs, iwvl, dtheta*206265000); writebin(psf2x, "powfs%d_psf2x_%d", ipowfs,iwvl); dmat *psf2=dinterp1(psf1x, psf1y, psf2x, 0); normalize_sum(psf2->p, psf2->nx*psf2->ny, 1); psf2->nx=ncomp; psf2->ny=ncomp; writebin(psf2, "powfs%d_psf2_%d", ipowfs,iwvl); cmat *otf2=cnew(ncomp, ncomp); //cfft2plan(otf2, -1); ccpd(&otf2, psf2);//peak in center cfftshift(otf2);//peak in corner cfft2(otf2, -1); cfftshift(otf2);//peak in center writebin(otf2, "powfs%d_otf2_%d", ipowfs, iwvl); writebin(nominal, "powfs%d_dtf%d_nominal_0",ipowfs,iwvl); for(int i=0; i<ncomp*ncomp; i++){ nominal->p[i]*=otf2->p[i]; } writebin(nominal, "powfs%d_dtf%d_nominal_1",ipowfs,iwvl); dfree(psf1x); dfree(psf1y); dfree(psf2x); dfree(psf1); cfree(otf2); dfree(psf2); } cfftshift(nominal);//peak in corner cfft2(nominal,-1); cfftshift(nominal);//peak in center cfft2i(nominal,1); warning_once("double check nominal for off centered skyc.fnpsf1\n"); /*This nominal will multiply to OTF with peak in corner. But after inverse fft, peak will be in center*/ ccp(&powfs[ipowfs].dtf[iwvl].nominal, nominal); cfree(nominal); loc_t *loc_psf=mksqloc(ncomp, ncomp, dtheta, dtheta, -ncomp2*dtheta, -ncomp2*dtheta); powfs[ipowfs].dtf[iwvl].si=mkh(loc_psf,loc_ccd,0,0,1); locfree(loc_psf); if(parms->skyc.dbg){ writebin(powfs[ipowfs].dtf[iwvl].nominal, "%s/powfs%d_dtf%d_nominal",dirsetup,ipowfs,iwvl); writebin(powfs[ipowfs].dtf[iwvl].si, "%s/powfs%d_dtf%d_si",dirsetup,ipowfs,iwvl); } powfs[ipowfs].dtf[iwvl].U=cnew(ncomp,1); dcomplex *U=powfs[ipowfs].dtf[iwvl].U->p; for(int ix=0; ix<ncomp; ix++){ int jx=ix<ncomp2?ix:(ix-ncomp); U[ix]=COMPLEX(0, -2.*M_PI*jx*du); } }/*iwvl */ locfree(loc_ccd); }/*ipowfs */ }
/** Time domain physical simulation. noisy: - 0: no noise at all; - 1: poisson and read out noise. - 2: only poisson noise. */ dmat *skysim_sim(dmat **mresout, const dmat *mideal, const dmat *mideal_oa, double ngsol, ASTER_S *aster, const POWFS_S *powfs, const PARMS_S *parms, int idtratc, int noisy, int phystart){ int dtratc=0; if(!parms->skyc.multirate){ dtratc=parms->skyc.dtrats->p[idtratc]; } int hasphy; if(phystart>-1 && phystart<aster->nstep){ hasphy=1; }else{ hasphy=0; } const int nmod=mideal->nx; dmat *res=dnew(6,1);/*Results. 1-2: NGS and TT modes., 3-4:On axis NGS and TT modes, 4-6: On axis NGS and TT wihtout considering un-orthogonality.*/ dmat *mreal=NULL;/*modal correction at this step. */ dmat *merr=dnew(nmod,1);/*modal error */ dcell *merrm=dcellnew(1,1);dcell *pmerrm=NULL; const int nstep=aster->nstep?aster->nstep:parms->maos.nstep; dmat *mres=dnew(nmod,nstep); dmat* rnefs=parms->skyc.rnefs; dcell *zgradc=dcellnew3(aster->nwfs, 1, aster->ngs, 0); dcell *gradout=dcellnew3(aster->nwfs, 1, aster->ngs, 0); dmat *gradsave=0; if(parms->skyc.dbg){ gradsave=dnew(aster->tsa*2,nstep); } SERVO_T *st2t=0; kalman_t *kalman=0; dcell *mpsol=0; dmat *pgm=0; dmat *dtrats=0; int multirate=parms->skyc.multirate; if(multirate){ kalman=aster->kalman[0]; dtrats=aster->dtrats; }else{ if(parms->skyc.servo>0){ const double dtngs=parms->maos.dt*dtratc; st2t=servo_new(merrm, NULL, 0, dtngs, aster->gain->p[idtratc]); pgm=aster->pgm->p[idtratc]; }else{ kalman=aster->kalman[idtratc]; } } if(kalman){ kalman_init(kalman); mpsol=dcellnew(aster->nwfs, 1); //for psol grad. } const long nwvl=parms->maos.nwvl; dcell **psf=0, **mtche=0, **ints=0; ccell *wvf=0,*wvfc=0, *otf=0; if(hasphy){ psf=mycalloc(aster->nwfs,dcell*); wvf=ccellnew(aster->nwfs,1); wvfc=ccellnew(aster->nwfs,1); mtche=mycalloc(aster->nwfs,dcell*); ints=mycalloc(aster->nwfs,dcell*); otf=ccellnew(aster->nwfs,1); for(long iwfs=0; iwfs<aster->nwfs; iwfs++){ const int ipowfs=aster->wfs[iwfs].ipowfs; const long ncomp=parms->maos.ncomp[ipowfs]; const long nsa=parms->maos.nsa[ipowfs]; wvf->p[iwfs]=cnew(ncomp,ncomp); wvfc->p[iwfs]=NULL; psf[iwfs]=dcellnew(nsa,nwvl); //cfft2plan(wvf->p[iwfs], -1); if(parms->skyc.multirate){ mtche[iwfs]=aster->wfs[iwfs].pistat->mtche[(int)aster->idtrats->p[iwfs]]; }else{ mtche[iwfs]=aster->wfs[iwfs].pistat->mtche[idtratc]; } otf->p[iwfs]=cnew(ncomp,ncomp); //cfft2plan(otf->p[iwfs],-1); //cfft2plan(otf->p[iwfs],1); ints[iwfs]=dcellnew(nsa,1); int pixpsa=parms->skyc.pixpsa[ipowfs]; for(long isa=0; isa<nsa; isa++){ ints[iwfs]->p[isa]=dnew(pixpsa,pixpsa); } } } for(int irep=0; irep<parms->skyc.navg; irep++){ if(kalman){ kalman_init(kalman); }else{ servo_reset(st2t); } dcellzero(zgradc); dcellzero(gradout); if(ints){ for(int iwfs=0; iwfs<aster->nwfs; iwfs++){ dcellzero(ints[iwfs]); } } for(int istep=0; istep<nstep; istep++){ memcpy(merr->p, PCOL(mideal,istep), nmod*sizeof(double)); dadd(&merr, 1, mreal, -1);/*form NGS mode error; */ memcpy(PCOL(mres,istep),merr->p,sizeof(double)*nmod); if(mpsol){//collect averaged modes for PSOL. for(long iwfs=0; iwfs<aster->nwfs; iwfs++){ dadd(&mpsol->p[iwfs], 1, mreal, 1); } } pmerrm=0; if(istep>=parms->skyc.evlstart){/*performance evaluation*/ double res_ngs=dwdot(merr->p,parms->maos.mcc,merr->p); if(res_ngs>ngsol*100){ dfree(res); res=NULL; break; } { res->p[0]+=res_ngs; res->p[1]+=dwdot2(merr->p,parms->maos.mcc_tt,merr->p); double dot_oa=dwdot(merr->p, parms->maos.mcc_oa, merr->p); double dot_res_ideal=dwdot(merr->p, parms->maos.mcc_oa, PCOL(mideal,istep)); double dot_res_oa=0; for(int imod=0; imod<nmod; imod++){ dot_res_oa+=merr->p[imod]*IND(mideal_oa,imod,istep); } res->p[2]+=dot_oa-2*dot_res_ideal+2*dot_res_oa; res->p[4]+=dot_oa; } { double dot_oa_tt=dwdot2(merr->p, parms->maos.mcc_oa_tt, merr->p); /*Notice that mcc_oa_tt2 is 2x5 marix. */ double dot_res_ideal_tt=dwdot(merr->p, parms->maos.mcc_oa_tt2, PCOL(mideal,istep)); double dot_res_oa_tt=0; for(int imod=0; imod<2; imod++){ dot_res_oa_tt+=merr->p[imod]*IND(mideal_oa,imod,istep); } res->p[3]+=dot_oa_tt-2*dot_res_ideal_tt+2*dot_res_oa_tt; res->p[5]+=dot_oa_tt; } }//if evl if(istep<phystart || phystart<0){ /*Ztilt, noise free simulation for acquisition. */ dmm(&zgradc->m, 1, aster->gm, merr, "nn", 1);/*grad due to residual NGS mode. */ for(int iwfs=0; iwfs<aster->nwfs; iwfs++){ const int ipowfs=aster->wfs[iwfs].ipowfs; const long ng=parms->maos.nsa[ipowfs]*2; for(long ig=0; ig<ng; ig++){ zgradc->p[iwfs]->p[ig]+=aster->wfs[iwfs].ztiltout->p[istep*ng+ig]; } } for(int iwfs=0; iwfs<aster->nwfs; iwfs++){ int dtrati=(multirate?(int)dtrats->p[iwfs]:dtratc); if((istep+1) % dtrati==0){ dadd(&gradout->p[iwfs], 0, zgradc->p[iwfs], 1./dtrati); dzero(zgradc->p[iwfs]); if(noisy){ int idtrati=(multirate?(int)aster->idtrats->p[iwfs]:idtratc); dmat *nea=aster->wfs[iwfs].pistat->sanea->p[idtrati]; for(int i=0; i<nea->nx; i++){ gradout->p[iwfs]->p[i]+=nea->p[i]*randn(&aster->rand); } } pmerrm=merrm;//record output. } } }else{ /*Accumulate PSF intensities*/ for(long iwfs=0; iwfs<aster->nwfs; iwfs++){ const double thetax=aster->wfs[iwfs].thetax; const double thetay=aster->wfs[iwfs].thetay; const int ipowfs=aster->wfs[iwfs].ipowfs; const long nsa=parms->maos.nsa[ipowfs]; ccell* wvfout=aster->wfs[iwfs].wvfout[istep]; for(long iwvl=0; iwvl<nwvl; iwvl++){ double wvl=parms->maos.wvl[iwvl]; for(long isa=0; isa<nsa; isa++){ ccp(&wvfc->p[iwfs], IND(wvfout,isa,iwvl)); /*Apply NGS mode error to PSF. */ ngsmod2wvf(wvfc->p[iwfs], wvl, merr, powfs+ipowfs, isa, thetax, thetay, parms); cembedc(wvf->p[iwfs],wvfc->p[iwfs],0,C_FULL); cfft2(wvf->p[iwfs],-1); /*peak in corner. */ cabs22d(&psf[iwfs]->p[isa+nsa*iwvl], 1., wvf->p[iwfs], 1.); }/*isa */ }/*iwvl */ }/*iwfs */ /*Form detector image from accumulated PSFs*/ double igrad[2]; for(long iwfs=0; iwfs<aster->nwfs; iwfs++){ int dtrati=dtratc, idtrat=idtratc; if(multirate){//multirate idtrat=aster->idtrats->p[iwfs]; dtrati=dtrats->p[iwfs]; } if((istep+1) % dtrati == 0){/*has output */ dcellzero(ints[iwfs]); const int ipowfs=aster->wfs[iwfs].ipowfs; const long nsa=parms->maos.nsa[ipowfs]; for(long isa=0; isa<nsa; isa++){ for(long iwvl=0; iwvl<nwvl; iwvl++){ double siglev=aster->wfs[iwfs].siglev->p[iwvl]; ccpd(&otf->p[iwfs],psf[iwfs]->p[isa+nsa*iwvl]); cfft2i(otf->p[iwfs], 1); /*turn to OTF, peak in corner */ ccwm(otf->p[iwfs], powfs[ipowfs].dtf[iwvl].nominal); cfft2(otf->p[iwfs], -1); dspmulcreal(ints[iwfs]->p[isa]->p, powfs[ipowfs].dtf[iwvl].si, otf->p[iwfs]->p, siglev); } /*Add noise and apply matched filter. */ #if _OPENMP >= 200805 #pragma omp critical #endif switch(noisy){ case 0:/*no noise at all. */ break; case 1:/*both poisson and read out noise. */ { double bkgrnd=aster->wfs[iwfs].bkgrnd*dtrati; addnoise(ints[iwfs]->p[isa], &aster->rand, bkgrnd, bkgrnd, 0,0,IND(rnefs,idtrat,ipowfs)); } break; case 2:/*there is still poisson noise. */ addnoise(ints[iwfs]->p[isa], &aster->rand, 0, 0, 0,0,0); break; default: error("Invalid noisy\n"); } igrad[0]=0; igrad[1]=0; double pixtheta=parms->skyc.pixtheta[ipowfs]; if(parms->skyc.mtch){ dmulvec(igrad, mtche[iwfs]->p[isa], ints[iwfs]->p[isa]->p, 1); } if(!parms->skyc.mtch || fabs(igrad[0])>pixtheta || fabs(igrad[1])>pixtheta){ if(!parms->skyc.mtch){ warning2("fall back to cog\n"); }else{ warning_once("mtch is out of range\n"); } dcog(igrad, ints[iwfs]->p[isa], 0, 0, 0, 3*IND(rnefs,idtrat,ipowfs), 0); igrad[0]*=pixtheta; igrad[1]*=pixtheta; } gradout->p[iwfs]->p[isa]=igrad[0]; gradout->p[iwfs]->p[isa+nsa]=igrad[1]; }/*isa */ pmerrm=merrm; dcellzero(psf[iwfs]);/*reset accumulation.*/ }/*if iwfs has output*/ }/*for wfs*/ }/*if phystart */ //output to mreal after using it to ensure two cycle delay. if(st2t){//Type I or II control. if(st2t->mint->p[0]){//has output. dcp(&mreal, st2t->mint->p[0]->p[0]); } }else{//LQG control kalman_output(kalman, &mreal, 0, 1); } if(kalman){//LQG control int indk=0; //Form PSOL grads and obtain index to LQG M for(int iwfs=0; iwfs<aster->nwfs; iwfs++){ int dtrati=(multirate?(int)dtrats->p[iwfs]:dtratc); if((istep+1) % dtrati==0){ indk|=1<<iwfs; dmm(&gradout->p[iwfs], 1, aster->g->p[iwfs], mpsol->p[iwfs], "nn", 1./dtrati); dzero(mpsol->p[iwfs]); } } if(indk){ kalman_update(kalman, gradout->m, indk-1); } }else if(st2t){ if(pmerrm){ dmm(&merrm->p[0], 0, pgm, gradout->m, "nn", 1); } servo_filter(st2t, pmerrm);//do even if merrm is zero. to simulate additional latency } if(parms->skyc.dbg){ memcpy(PCOL(gradsave, istep), gradout->m->p, sizeof(double)*gradsave->nx); } }/*istep; */ } if(parms->skyc.dbg){ int dtrati=(multirate?(int)dtrats->p[0]:dtratc); writebin(gradsave,"%s/skysim_grads_aster%d_dtrat%d",dirsetup, aster->iaster,dtrati); writebin(mres,"%s/skysim_sim_mres_aster%d_dtrat%d",dirsetup,aster->iaster,dtrati); } dfree(mreal); dcellfree(mpsol); dfree(merr); dcellfree(merrm); dcellfree(zgradc); dcellfree(gradout); dfree(gradsave); if(hasphy){ dcellfreearr(psf, aster->nwfs); dcellfreearr(ints, aster->nwfs); ccellfree(wvf); ccellfree(wvfc); ccellfree(otf); free(mtche); } servo_free(st2t); /*dfree(mres); */ if(mresout) { *mresout=mres; }else{ dfree(mres); } dscale(res, 1./((nstep-parms->skyc.evlstart)*parms->skyc.navg)); return res; }