int convert (MagickWand *input, MagickWand **output, convert_t *opts, unsigned char* data, size_t size) {
if (convert_density(input, opts) != MagickPass) return -7;
if (MagickReadImageBlob(input, data, size) != MagickPass) return -2;
if (convert_adjoin(input, output, opts) != MagickPass) return -8;
input = *output;
MagickResetIterator(input);
MagickNextImage(input); // Has to be called after MagickResetIterator to set the first picture as the current
do {
if (convert_format(input, opts) != MagickPass) return -3;
if (convert_scale(input, opts) != MagickPass) return -4;
if (convert_rotate(input, opts) != MagickPass) return -5;
if (convert_crop(input, opts) != MagickPass) return -6;
} while (MagickNextImage(input));
return 0;
}
void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[])
{
register int i;
float x;
int max_len = 6;
int p;
int ns0 = 29;
static area_function *af0;
if (CheckArguments(nlhs, plhs, nrhs, prhs) ){
mexErrMsgTxt("AMgetdata argument checking failed.");
return ;
}
/* read nasal tract area function from the file */
//printf("Reading nasal tract file.\n");
read_af(NTAFpath , &nna, &afnt );
//printf("Finished Reading nasal tract file.\n");
/* Initialization */
//read_rad();
// update all constants and variables
if((int)(pTCcfg[0]) == RL_CIRCUIT) rad_boundary = RL_CIRCUIT;
else rad_boundary = SHORT_CIRCUIT;
//printf("Rad_boundary[%d]\n",rad_boundary);
if((int)(pTCcfg[1]) == YIELDING) wall = YIELDING;
else wall = RIGID;
//printf("wall[%d]\n",wall);
if((int)(pTCcfg[2]) == ON) nasal_tract = ON;
else nasal_tract = OFF;
//printf("nasal_tract[%d]\n",nasal_tract);
if((int)(pTCcfg[3]) == CLOSE) glt_boundary = CLOSE;
else glt_boundary = OPEN;
//printf("glt_boundary[%d]\n",glt_boundary);
ro = (float)(pPCcfg[0]);
//printf("Air density[%f]\n",ro);
c = (float)(pPCcfg[1]);
//printf("Sound velocity[%f]\n",c);
wall_resi = (float)(pPCcfg[2]);
//printf("wall_resi[%f]\n",wall_resi);
wall_mass = (float)(pPCcfg[3]);
//printf("wall_mass[%f]\n",wall_mass);
wall_comp = (float)(pPCcfg[4]);
//printf("wall_comp[%f]\n",wall_comp);
for(i=0;i<7;i++)
{
AMpar[i] = (float)(pAMcfg[i]);
//printf("AMpar[%d][%f]\n",i,AMpar[i]);
}
anc = (float)(pAMcfg[7]);
//printf("nasal area[%f]\n",anc);
/* Initialization */
read_model_spec();
af0 = (area_function *) calloc( ns0, sizeof(area_function) );
nph = 9;
nbu = 8;
nss = nbu + nph;
afvt = (area_function *) calloc( nss, sizeof(area_function) );
convert_scale();
semi_polar();
oAf = mxCreateDoubleMatrix(2,nss, mxREAL);
pAf = mxGetPr(oAf);
/* Compute VT profile and area function, and plot them */
lam( AMpar ); /* profile */
sagittal_to_area( &ns0, af0 ); /* area function */
for(i=0;i<ns0;i++)
{
//printf("AreaNS0[%d][%f]\n",i,af0[i]);
}
appro_area_function( ns0, af0, nss, afvt);
for(i=0;i<nss;i++)
{
//printf("AreaAF[%d][%f]\n",i,afvt[i]);
pAf[2*i] = afvt[i].A;
pAf[2*i+1] = afvt[i].x;
}
if( nasal_tract == ON )
{
anc = (float) min( anc, afvt[nph].A );
afvt[nph].A -= anc;
pAf[2*nph] = afvt[nph].A;
pAf[2*nph+1] = afvt[nph].x;
}
calplot_tf_FBA(nfrmmax, frm, bw, amp, &nfrms, tfunc, &ntf);
//printf("Finished calculations.\n");
oPdat1 = mxCreateDoubleMatrix(4,NP, mxREAL);
pPdat1 = mxGetPr(oPdat1);
for(i=0;i<NP;i++)
{
pPdat1[4*i] = ivt[i].x;
pPdat1[4*i+1] = ivt[i].y;
pPdat1[4*i+2] = evt[i].x;
pPdat1[4*i+3] = evt[i].y;
}
oPdat2 = mxCreateDoubleMatrix(1,2,mxREAL);
pPdat2 = mxGetPr(oPdat2);
pPdat2[0] = lip_w;
pPdat2[1] = lip_h;
oTf = mxCreateDoubleMatrix(ntf, 1, mxREAL);
pTf = mxGetPr(oTf);
for(i=0;i<ntf;i++)
{
pTf[i] = tfunc[i];
}
oFmt = mxCreateDoubleMatrix(nfrms, 1, mxREAL);
pFmt = mxGetPr(oFmt);
oBw = mxCreateDoubleMatrix(nfrms, 1, mxREAL);
pBw = mxGetPr(oBw);
oAmp = mxCreateDoubleMatrix(nfrms, 1, mxREAL);
pAmp = mxGetPr(oAmp);
for(i=0;i<nfrms;i++)
{
pFmt[i] = frm[i];
pBw[i] = bw[i];
pAmp[i] = amp[i];
}
/* Assign output pointers */
plhs[0] = oAf;
plhs[1] = oTf;
plhs[2] = oFmt;
plhs[3] = oBw;
plhs[4] = oAmp;
plhs[5] = oPdat1;
plhs[6] = oPdat2;
// do cleanup
//free( rad_re );
//free( rad_im );
free( afnt );
free( af0 );
free( afvt );
}
void CVTract::SetSize(double size)
{
int nfs, nafs;
/* semi-polar coordinate specs. */
// skiplines( in, 9 );
//fscanf(in, "%d %d %d %f %f %f %d %d\n",
// &m1, &m2, &m3, &dl, &omega, &theta, &ix0, &iy0 );
m1 = 14;
m2 = 11;
m3 = 6;
dl = 0.50000;
omega = -11.25000;
theta = 11.25000;
ix0 = 3000;
iy0 = 1850;
//skiplines( in, 1 );
//fscanf(in, "%f %f \n", &TEKvt, &TEKlip);
TEKvt = 188.679245;
TEKlip = 0.000000;
//skiplines( in, 1 );
//for(i=0; i<m1+m2+m3; i++)
// fscanf(in, "%d %f %f \n", &dummy, &alph[i], &beta[i]);
alph[0] = 1.800000; beta[0] = 1.200000;
alph[1] = 1.800000; beta[1] = 1.200000;
alph[2] = 1.800000; beta[2] = 1.200000;
alph[3] = 1.800000; beta[3] = 1.200000;
alph[4] = 1.800000; beta[4] = 1.200000;
alph[5] = 1.800000; beta[5] = 1.200000;
alph[6] = 1.800000; beta[6] = 1.200000;
alph[7] = 1.800000; beta[7] = 1.200000;
alph[8] = 1.800000; beta[8] = 1.200000;
alph[9] = 1.800000; beta[9] = 1.200000;
alph[10] = 1.800000; beta[10] = 1.200000;
alph[11] = 1.800000; beta[11] = 1.200000;
alph[12] = 1.800000; beta[12] = 1.200000;
alph[13] = 1.800000; beta[13] = 1.200000;
alph[14] = 1.800000; beta[14] = 1.200000;
alph[15] = 1.800000; beta[15] = 1.200000;
alph[16] = 1.800000; beta[16] = 1.300000;
alph[17] = 1.700000; beta[17] = 1.400000;
alph[18] = 1.700000; beta[18] = 1.400000;
alph[19] = 1.700000; beta[19] = 1.500000;
alph[20] = 1.700000; beta[20] = 1.500000;
alph[21] = 1.700000; beta[21] = 1.500000;
alph[22] = 1.700000; beta[22] = 1.500000;
alph[23] = 1.700000; beta[23] = 1.500000;
alph[24] = 1.700000; beta[24] = 1.500000;
alph[25] = 1.700000; beta[25] = 1.500000;
alph[26] = 1.800000; beta[26] = 1.500000;
alph[27] = 1.800000; beta[27] = 1.500000;
alph[28] = 1.900000; beta[28] = 1.500000;
alph[29] = 2.000000; beta[29] = 1.500000;
alph[30] = 2.600000; beta[30] = 1.500000;
/* Lip specifications */
//skiplines( in, 2 );
//fscanf(in, "%d %d %d %d %d %d\n",
// &nvrs_lip, &jaw_lip, &dummy, &dummy, &nfs, &nafs);
nvrs_lip = 4;
jaw_lip = 1;
nfs = 4;
nafs = 2;
//if( jaw_lip != JAW || nfs < JAW+LIP )
//{ printf("Not enough factors in the lip spec..");
// exit(1);
//}
//skiplines( in, nafs + 2 );
//for(i=0; i<nvrs_lip; i++) fscanf(in, "%s\n", vlab_dummy);
//skiplines( in, 1 );
//for(i=0; i<JAW+LIP; i++) fscanf(in, "%s\n", flab_lip[i]);
strcpy(flab_lip[0],"JW");
strcpy(flab_lip[1],"HT");
strcpy(flab_lip[2],"P1");
//skiplines( in, 2 );
//for(i=0; i<nvrs_lip; i++) fscanf(in, "%f \n", &u_lip[i]);
u_lip[0] = 104.271675;
u_lip[1] = 122.812141;
u_lip[2] = 135.938339;
u_lip[3] = 460.440857;
//skiplines( in, 1 );
//for(i=0; i<nvrs_lip; i++) fscanf(in, "%f \n", &s_lip[i]);
s_lip[0] = 27.674635;
s_lip[1] = 33.068081;
s_lip[2] = 99.392258;
s_lip[3] = 213.996170;
//skiplines( in, 1 );
//fscanf(in, "%f %f \n", &inci_x, &inci_y);
inci_x = 2212.354492;
inci_y = 1999.574219;
//skiplines( in, 3 );
//for(i=0; i<nvrs_lip; i++)
//{ for(j=0; j<JAW+LIP; j++) fscanf(in, "%f \n", &A_lip[i][j]);
// skiplines( in, 1 );
//}
A_lip[0][0] = 1.000000; A_lip[0][1] = 0.000000; A_lip[0][2] = 0.000000;
A_lip[1][0] = 0.178244; A_lip[1][1] =-0.395733; A_lip[1][2] = 0.888897;
A_lip[2][0] =-0.154638; A_lip[2][1] = 0.987971; A_lip[2][2] = 0.000000;
A_lip[3][0] =-0.217332; A_lip[3][1] = 0.825187; A_lip[3][2] =-0.303429;
//skiplines( in, 1 + nvrs_lip );
/* Tongue */
//skiplines( in, 2 );
//fscanf(in, "%d %d %d %d %d %d\n",
// &nvrs_tng, &jaw_tng, &iniva_tng, &lstva_tng, &nfs, &nafs);
nvrs_tng = 26;
jaw_tng = 1;
iniva_tng = 7;
lstva_tng = 31;
nfs = 7;
nafs = 1;
//if( jaw_tng != JAW || nfs < JAW+TNG )
//{ printf("Not enough factors in the tongue spec..");
// exit(1);
//}
iniva_tng--; /* coordinate address for C, now same as lable */
lstva_tng--;
//skiplines( in, nafs + 2 );
//for(i=0; i<nvrs_tng; i++) fscanf(in, "%s\n", vlab_dummy);
//skiplines( in, 1 );
//for(i=0; i<JAW+TNG; i++) fscanf(in, "%s\n", flab_tng[i]);
strcpy(flab_tng[0],"JW");
strcpy(flab_tng[1],"P1");
strcpy(flab_tng[2],"P2");
strcpy(flab_tng[3],"P3");
//skiplines( in, 2 );
//for(i=0; i<nvrs_tng; i++) fscanf(in, "%f \n", &u_tng[i]);
u_tng[0] = 104.271675;
u_tng[1] = 443.988434;
u_tng[2] = 450.481689;
u_tng[3] = 399.942200;
u_tng[4] = 348.603088;
u_tng[5] = 351.181122;
u_tng[6] = 365.404633;
u_tng[7] = 370.290955;
u_tng[8] = 356.202301;
u_tng[9] = 341.890167;
u_tng[10] = 332.117523;
u_tng[11] = 326.826599;
u_tng[12] = 326.512512;
u_tng[13] = 331.631989;
u_tng[14] = 343.175323;
u_tng[15] = 361.265900;
u_tng[16] = 385.231201;
u_tng[17] = 411.826599;
u_tng[18] = 435.691711;
u_tng[19] = 455.040466;
u_tng[20] = 462.736023;
u_tng[21] = 453.025055;
u_tng[22] = 432.250488;
u_tng[23] = 407.358368;
u_tng[24] = 384.551056;
u_tng[25] = 363.836212;
//skiplines( in, 1 );
//for(i=0; i<nvrs_tng; i++) fscanf(in, "%f \n", &s_tng[i]);
//s_tng[0] = 27.674635;
s_tng[1] = 29.947931;
s_tng[2] = 44.694466;
s_tng[3] = 99.310226;
s_tng[4] = 96.871323;
s_tng[5] = 84.140404;
s_tng[6] = 78.357513;
s_tng[7] = 73.387718;
s_tng[8] = 72.926758;
s_tng[9] = 71.453232;
s_tng[10] = 69.288765;
s_tng[11] = 66.615509;
s_tng[12] = 63.603722;
s_tng[13] = 59.964859;
s_tng[14] = 56.695446;
s_tng[15] = 56.415058;
s_tng[16] = 62.016468;
s_tng[17] = 73.235176;
s_tng[18] = 84.008438;
s_tng[19] = 91.488312;
s_tng[20] = 94.124176;
s_tng[21] = 95.246323;
s_tng[22] = 93.516365;
s_tng[23] = 93.000343;
s_tng[24] = 100.934669;
s_tng[25] = 106.512482;
//skiplines( in, 1 );
//for(i=0; i<nvrs_tng; i++)
//{ for(j=0; j<JAW+TNG; j++) fscanf(in, "%f \n", &A_tng[i][j]);
// skiplines( in, 1 );
//}
A_tng[0][0] = 1.000000; A_tng[0][1] = 0.000000; A_tng[0][2] = 0.000000; A_tng[0][3] = 0.000000;
A_tng[1][0] =-0.464047; A_tng[1][1] = 0.098776; A_tng[1][2] =-0.251690; A_tng[1][3] = 0.228351;
A_tng[2][0] =-0.328015; A_tng[2][1] = 0.337579; A_tng[2][2] =-0.283667; A_tng[2][3] = 0.568234;
A_tng[3][0] =-0.213039; A_tng[3][1] = 0.485565; A_tng[3][2] =-0.283533; A_tng[3][3] = 0.653696;
A_tng[4][0] =-0.302565; A_tng[4][1] = 0.705432; A_tng[4][2] =-0.379044; A_tng[4][3] = 0.392917;
A_tng[5][0] =-0.327806; A_tng[5][1] = 0.786897; A_tng[5][2] =-0.388116; A_tng[5][3] = 0.245703;
A_tng[6][0] =-0.325065; A_tng[6][1] = 0.852409; A_tng[6][2] =-0.285125; A_tng[6][3] = 0.176843;
A_tng[7][0] =-0.325739; A_tng[7][1] = 0.904725; A_tng[7][2] =-0.142602; A_tng[7][3] = 0.138558;
A_tng[8][0] =-0.313741; A_tng[8][1] = 0.926339; A_tng[8][2] = 0.021042; A_tng[8][3] = 0.122976;
A_tng[9][0] =-0.288138; A_tng[9][1] = 0.924019; A_tng[9][2] = 0.131949; A_tng[9][3] = 0.116762;
A_tng[10][0] =-0.249008; A_tng[10][1] = 0.909585; A_tng[10][2] = 0.250320; A_tng[10][3] = 0.112433;
A_tng[11][0] =-0.196936; A_tng[11][1] = 0.882236; A_tng[11][2] = 0.369083; A_tng[11][3] = 0.112396;
A_tng[12][0] =-0.128884; A_tng[12][1] = 0.830243; A_tng[12][2] = 0.499894; A_tng[12][3] = 0.115700;
A_tng[13][0] =-0.040825; A_tng[13][1] = 0.730520; A_tng[13][2] = 0.651662; A_tng[13][3] = 0.112048;
A_tng[14][0] = 0.073420; A_tng[14][1] = 0.543080; A_tng[14][2] = 0.807947; A_tng[14][3] = 0.126204;
A_tng[15][0] = 0.202726; A_tng[15][1] = 0.230555; A_tng[15][2] = 0.919065; A_tng[15][3] = 0.163735;
A_tng[16][0] = 0.298853; A_tng[16][1] =-0.162541; A_tng[16][2] = 0.899074; A_tng[16][3] = 0.213884;
A_tng[17][0] = 0.332785; A_tng[17][1] =-0.491647; A_tng[17][2] = 0.748869; A_tng[17][3] = 0.243163;
A_tng[18][0] = 0.349955; A_tng[18][1] =-0.681313; A_tng[18][2] = 0.567615; A_tng[18][3] = 0.245295;
A_tng[19][0] = 0.377277; A_tng[19][1] =-0.771200; A_tng[19][2] = 0.410502; A_tng[19][3] = 0.249425;
A_tng[20][0] = 0.422713; A_tng[20][1] =-0.804874; A_tng[20][2] = 0.270513; A_tng[20][3] = 0.274015;
A_tng[21][0] = 0.474635; A_tng[21][1] =-0.797704; A_tng[21][2] = 0.129324; A_tng[21][3] = 0.314454;
A_tng[22][0] = 0.526087; A_tng[22][1] =-0.746938; A_tng[22][2] =-0.026201; A_tng[22][3] = 0.366149;
A_tng[23][0] = 0.549466; A_tng[23][1] =-0.643572; A_tng[23][2] =-0.190005; A_tng[23][3] = 0.422848;
A_tng[24][0] = 0.494200; A_tng[24][1] =-0.504012; A_tng[24][2] =-0.350434; A_tng[24][3] = 0.488056;
A_tng[25][0] = 0.448797; A_tng[25][1] =-0.417352; A_tng[25][2] =-0.445410; A_tng[25][3] = 0.500909;
//skiplines( in, 1 + nvrs_tng );
/* Larynx */
//skiplines( in, 2 );
//fscanf(in, "%d %d %d %d %d %d\n",
// &nvrs_lrx, &jaw_lrx, &iniva_lrx, &lstva_lrx, &nfs, &nafs);
nvrs_lrx = 5;
jaw_lrx = 1;
iniva_lrx = 7;
lstva_lrx = 6;
nfs = 5;
nafs = 2;
//if( jaw_lrx != JAW || nfs < JAW+LRX )
//{ printf("No enough factors in the larynx spec..");
// exit(1);
//}
//skiplines( in, nafs + 2 );
//for(i=0; i<nvrs_lrx; i++) fscanf(in, "%s\n", vlab_dummy);
//skiplines( in, 1 );
//for(i=0; i<JAW+LRX; i++) fscanf(in, "%s\n", flab_lrx[i]);
strcpy(flab_lrx[0],"JW");
strcpy(flab_lrx[1],"Y1");
//skiplines( in, 2 );
//for(i=0; i<nvrs_lrx; i++) fscanf(in, "%f \n", &u_lrx[i]);
u_lrx[0] = 104.271675;
u_lrx[1] = 143.138733;
u_lrx[2] = -948.229309;
u_lrx[3] = 404.678223;
u_lrx[4] = -962.936401;
//skiplines( in, 1 );
//for(i=0; i<nvrs_lrx; i++) fscanf(in, "%f \n", &s_lrx[i]);
s_lrx[0] = 27.674635;
s_lrx[1] = 41.593315;
s_lrx[2] = 65.562340;
s_lrx[3] = 44.372742;
s_lrx[4] = 66.147499;
//skiplines( in, 1 );
//for(i=0; i<nvrs_lrx; i++)
//{ for(j=0; j<JAW+LRX; j++) fscanf(in, "%f \n", &A_lrx[i][j]);
// skiplines( in, 1 );
//}
A_lrx[0][0] = 1.000000; A_lrx[0][1] = 0.000000;
A_lrx[1][0] =-0.208338; A_lrx[1][1] = 0.262446;
A_lrx[2][0] = 0.127814; A_lrx[2][1] = 0.991798;
A_lrx[3][0] =-0.131840; A_lrx[3][1] = 0.300784;
A_lrx[4][0] = 0.097688; A_lrx[4][1] = 0.934267;
//skiplines( in, 1 + nvrs_lrx );
/* Wall */
//skiplines( in, 2 );
//fscanf(in, "%d %d %d %d %d %d\n",
//&nvrs_wal, &jaw_wal, &iniva_wal, &lstva_wal, &nfs, &nafs);
nvrs_wal = 25;
jaw_wal = 0;
iniva_wal = 7;
lstva_wal = 31;
nfs = 7;
nafs = 0;
iniva_wal--; /* coordinate address for C, now same as lable */
lstva_wal--;
//skiplines( in, nafs + 2 );
//for(i=0; i<nvrs_wal; i++) fscanf(in, "%s\n", vlab_dummy);
//skiplines( in, 3 );
//for(i=0; i<nvrs_wal; i++) fscanf(in, "%f \n", &u_wal[i]);
u_wal[0] = 550.196533;
u_wal[1] = 604.878601;
u_wal[2] = 674.127197;
u_wal[3] = 678.776489;
u_wal[4] = 665.905579;
u_wal[5] = 653.312134;
u_wal[6] = 643.223511;
u_wal[7] = 633.836243;
u_wal[8] = 636.994202;
u_wal[9] = 668.834290;
u_wal[10] = 703.098267;
u_wal[11] = 657.815002;
u_wal[12] = 649.919067;
u_wal[13] = 565.194580;
u_wal[14] = 529.824646;
u_wal[15] = 573.250488;
u_wal[16] = 603.023132;
u_wal[17] = 621.433533;
u_wal[18] = 643.055847;
u_wal[19] = 650.136780;
u_wal[20] = 630.809265;
u_wal[21] = 589.867065;
u_wal[22] = 556.134888;
u_wal[23] = 541.551086;
u_wal[24] = 525.210022;
// other initialisation
vp_map = 1.0f;
size_correction = 1.10f;
vp_width_cm = 10.0f;
inci_lip = 0.8f;
inci_lip_vp = 0;
size_correction = size;
vp_width_cm = 1.1 * 10.0 / size;
convert_scale();
semi_polar();
}