/**
* Build a response text based on result from server method
*/
std::string Proto::build_response(Response& resp) {
JObject* obj = new JObject();
obj->put(Result, resp.get_serializer().getContent());
std::string jsonText = dumps(obj);
delete obj;
return jsonText;
}
/**
* Build an error message given error code
*/
std::string Proto::build_error(int code) {
JObject* obj = new JObject();
obj->put(Error, code);
std::string jsonText = dumps(obj);
delete obj;
return jsonText;
}
std::string Proto::build_request(
int clientno, int serverno,
int messageid, long timestamp,
size_t method_hash, OutSerializer& sout) {
JObject* obj = new JObject();
obj->put(ClientNo, clientno);
obj->put(ServerNo, serverno);
obj->put(Version, 1);
obj->put(Timestamp, timestamp);
obj->put(MessageId, messageid);
obj->put(Method, method_hash);
obj->put(Param, sout.getContent());
std::string msg = dumps(obj);
delete obj;
return msg;
}
void init( void )
{
int i;
/* fill twobits[] */
bzero( twobit, N_ASCII * sizeof( unsigned int ) );
for ( i = 0; i < 4; i++ )
twobit[real_nts[i]] = twobit[real_nts[i]+LOWER_OFF] = i;
#ifdef DEBUG
dumps( "twobit", twobit );
#endif
/* fill no_count[] - don't count anything ...*/
for ( i = 0; i < N_ASCII; i++ )
no_count[i] = 1;
/*... except real nucleotides */
for ( i = 0; i < 4; i++ )
no_count[real_nts[i]] = no_count[real_nts[i]+LOWER_OFF] = 0;
#ifdef DEBUG
dumps( "no_count", no_count );
#endif
/* is_not_space[c] is true for any chars which are not control */
/* chars or whitespace (make whitespace explicit here!) */
for ( i = 0; i < N_ASCII; i++ )
if ( i >= 33 && i <= 126 && i != ' ' && i != '\t' && i != '\n' )
is_not_space[i] = 1;
else
is_not_space[i] = 0;
#ifdef DEBUG
dumps( "is_not_space", is_not_space );
#endif
w_mask = 0;
n_kmers = 1;
for ( i = 0; i < word_size; i++ )
{
w_mask = (w_mask << 2) | 0x3;
n_kmers *= 4;
}
#ifdef DEBUG
printf( "word_size is %d, w_mask is %x, n_kmers is %d (0x%x)\n",
word_size, w_mask, n_kmers, n_kmers );
#endif
for ( i = 0; i < n_kmers; i++ )
{
kmer_seq[i] = strdup( int2seq( i ) );
#ifdef DEBUG
printf( "%10d 0x%08x [%s]\n", i, i, kmer_seq[i] );
#endif
}
for ( i = 0; i < n_kmers; i++ )
{
rc_map[i] = intcomp( i );
#ifdef DEBUG
printf( "%10d 0x%08x [%s] -> %10d 0x%08x [%s]\n",
i, i, kmer_seq[i], rc_map[i], rc_map[i], kmer_seq[rc_map[i]] );
#endif
}
}
