int main(int argc, char * argv[]){
FILE * output = stdout;
const char * bigram_filename = SYSTEM_BIGRAM;
SystemTableInfo system_table_info;
bool retval = system_table_info.load(SYSTEM_TABLE_INFO);
if (!retval) {
fprintf(stderr, "load table.conf failed.\n");
exit(ENOENT);
}
FacadePhraseIndex phrase_index;
const pinyin_table_info_t * phrase_files =
system_table_info.get_table_info();
if (!load_phrase_index(phrase_files, &phrase_index))
exit(ENOENT);
Bigram bigram;
bigram.attach(bigram_filename, ATTACH_READONLY);
begin_data(output);
gen_unigram(output, &phrase_index);
gen_bigram(output, &phrase_index, &bigram);
end_data(output);
return 0;
}
int main(int argc, char * argv[]){
FILE * output = stdout;
const char * bigram_filename = "bigram.db";
FacadePhraseIndex phrase_index;
//gb_char binary file
MemoryChunk * chunk = new MemoryChunk;
chunk->load("gb_char.bin");
phrase_index.load(1, chunk);
//gbk_char binary file
chunk = new MemoryChunk;
chunk->load("gbk_char.bin");
phrase_index.load(2, chunk);
Bigram bigram;
bigram.attach(bigram_filename, ATTACH_READONLY);
begin_data(output);
gen_unigram(output, &phrase_index);
gen_bigram(output, &phrase_index, &bigram);
end_data(output);
return 0;
}
int main(int argc, char * argv[]){
int i = 1;
const char * k_mixture_model_filename = NULL;
FILE * output = stdout;
while ( i < argc ){
if ( strcmp ("--help", argv[i]) == 0 ){
print_help();
exit(0);
} else if ( strcmp ("--k-mixture-model-file", argv[i]) == 0 ){
if ( ++i > argc ){
print_help();
exit(EINVAL);
}
k_mixture_model_filename = argv[i];
} else {
print_help();
exit(EINVAL);
}
++i;
}
FacadePhraseIndex phrase_index;
//gb_char binary file
MemoryChunk * chunk = new MemoryChunk;
chunk->load("gb_char.bin");
phrase_index.load(1, chunk);
//gbk_char binary file
chunk = new MemoryChunk;
chunk->load("gbk_char.bin");
phrase_index.load(2, chunk);
KMixtureModelBigram bigram(K_MIXTURE_MODEL_MAGIC_NUMBER);
bigram.attach(k_mixture_model_filename, ATTACH_READONLY);
print_k_mixture_model_magic_header(output, &bigram);
print_k_mixture_model_array_headers(output, &bigram, &phrase_index);
print_k_mixture_model_array_items(output, &bigram, &phrase_index);
end_data(output);
return 0;
}
int main(int argc, char * argv[]){
FILE * output = stdout;
const char * bigram_filename = "bigram.db";
MemoryChunk * chunk = NULL;
FacadePhraseIndex phrase_index;
if (!load_phrase_index(&phrase_index))
exit(ENOENT);
Bigram bigram;
bigram.attach(bigram_filename, ATTACH_READONLY);
begin_data(output);
gen_unigram(output, &phrase_index);
gen_bigram(output, &phrase_index, &bigram);
end_data(output);
return 0;
}
bool CSeqDBTaxInfo::GetTaxNames(Int4 tax_id,
SSeqDBTaxInfo & info )
{
static CTaxDBFileInfo t;
if (t.IsMissingTaxInfo()) return false;
Int4 low_index = 0;
Int4 high_index = t.GetTaxidCount() - 1;
const char * Data = t.GetDataPtr();
const CSeqDBTaxId* Index = t.GetIndexPtr();
Int4 low_taxid = Index[low_index ].GetTaxId();
Int4 high_taxid = Index[high_index].GetTaxId();
if((tax_id < low_taxid) || (tax_id > high_taxid))
return false;
Int4 new_index = (low_index+high_index)/2;
Int4 old_index = new_index;
while(1) {
Int4 curr_taxid = Index[new_index].GetTaxId();
if (tax_id < curr_taxid) {
high_index = new_index;
} else if (tax_id > curr_taxid){
low_index = new_index;
} else { /* Got it ! */
break;
}
new_index = (low_index+high_index)/2;
if (new_index == old_index) {
if (tax_id > curr_taxid) {
new_index++;
}
break;
}
old_index = new_index;
}
if (tax_id == Index[new_index].GetTaxId()) {
info.taxid = tax_id;
Uint4 begin_data(Index[new_index].GetOffset());
Uint4 end_data(0);
if (new_index == high_index) {
// Last index is special...
end_data = Uint4(t.GetDataFileSize());
if (end_data < begin_data) {
// Should not happen.
ERR_POST( "Error: Offset error at end of taxdb file.");
return false;
}
} else {
end_data = (Index[new_index+1].GetOffset());
}
const char * start_ptr = &Data[begin_data];
CSeqDB_Substring buffer(start_ptr, start_ptr + (end_data - begin_data));
CSeqDB_Substring sci, com, blast, king;
bool rc1, rc2, rc3;
rc1 = SeqDB_SplitString(buffer, sci, '\t');
rc2 = SeqDB_SplitString(buffer, com, '\t');
rc3 = SeqDB_SplitString(buffer, blast, '\t');
king = buffer;
if (rc1 && rc2 && rc3 && buffer.Size()) {
sci .GetString(info.scientific_name);
com .GetString(info.common_name);
blast .GetString(info.blast_name);
king .GetString(info.s_kingdom);
return true;
}
}
return false;
}
