static void recoverBrokenAdjacencies(Flower *flower, stList *recoveredCaps, Name referenceEventName) {
/*
* Find reference intervals that are book-ended by stubs created in a child flower.
*/
Flower_GroupIterator *groupIt = flower_getGroupIterator(flower);
Group *group;
while((group = flower_getNextGroup(groupIt)) != NULL) {
Flower *nestedFlower;
if((nestedFlower = group_getNestedFlower(group)) != NULL) {
Flower_EndIterator *endIt = flower_getEndIterator(nestedFlower);
End *childEnd;
while((childEnd = flower_getNextEnd(endIt)) != NULL) {
if(end_isStubEnd(childEnd) && flower_getEnd(flower, end_getName(childEnd)) == NULL) { //We have a thread we need to promote
Cap *childCap = getCapForReferenceEvent(childEnd, referenceEventName); //The cap in the reference
assert(childCap != NULL);
assert(!end_isAttached(childEnd));
childCap = cap_getStrand(childCap) ? childCap : cap_getReverse(childCap);
if (!cap_getSide(childCap)) {
Cap *adjacentChildCap = NULL;
int64_t adjacencyLength = traceThreadLength(childCap, &adjacentChildCap);
Cap *cap = copyCapToParent(childCap, recoveredCaps);
assert(adjacentChildCap != NULL);
assert(!end_isAttached(cap_getEnd(adjacentChildCap)));
assert(!cap_getSide(cap));
Cap *adjacentCap = copyCapToParent(adjacentChildCap, recoveredCaps);
cap_makeAdjacent(cap, adjacentCap);
setAdjacencyLength(cap, adjacentCap, adjacencyLength);
}
}
}
flower_destructEndIterator(endIt);
}
}
flower_destructGroupIterator(groupIt);
}
void testEnd_isAttachedOrFree(CuTest* testCase) {
cactusEndTestSetup();
End *end2 = end_construct(1, flower);
End *end3 = end_construct(0, flower);
Block *block = block_construct(2, flower);
End *end4 = block_get5End(block);
End *end5 = block_get3End(block);
CuAssertTrue(testCase, end_isAttached(end2));
CuAssertTrue(testCase, !end_isAttached(end3));
CuAssertTrue(testCase, !end_isFree(end2));
CuAssertTrue(testCase, end_isFree(end3));
CuAssertTrue(testCase, !end_isAttached(end4));
CuAssertTrue(testCase, !end_isAttached(end5));
CuAssertTrue(testCase, end_isFree(end4));
CuAssertTrue(testCase, end_isFree(end5));
cactusEndTestTeardown();
}
