static
bool isExclusive(const NGHolder &h,
const u32 num, unordered_set<u32> &tailId,
map<u32, unordered_set<u32>> &skipList,
const RoleInfo<role_id> &role1,
const RoleInfo<role_id> &role2) {
const u32 id1 = role1.id;
const u32 id2 = role2.id;
if (contains(skipList, id1) && contains(skipList[id1], id2)) {
return false;
}
const auto &triggers1 = role1.literals;
const auto &triggers2 = role2.literals;
if (isSuffix(triggers1, triggers2)) {
skipList[id2].insert(id1);
return false;
}
DEBUG_PRINTF("role id2:%u\n", id2);
const auto &cr1 = role1.cr;
if (overlaps(cr1, role2.last_cr)) {
CharReach cr = cr1 | role1.prefix_cr;
flat_set<NFAVertex> states;
for (const auto &lit : triggers2) {
auto lit1 = findStartPos(cr, lit);
if (lit1.empty()) {
continue;
}
states.clear();
if (lit1.size() < lit.size()) {
// Only starts.
states.insert(h.start);
states.insert(h.startDs);
} else {
// All vertices.
insert(&states, vertices(h));
}
auto activeStates = execute_graph(h, lit1, states);
// Check if only literal states are on
for (const auto &s : activeStates) {
if ((!is_any_start(s, h) && h[s].index <= num) ||
contains(tailId, h[s].index)) {
skipList[id2].insert(id1);
return false;
}
}
}
}
return true;
}
int main()
{
int rows;
int cols;
int c;
//scanf("%d %d\n", &rows, &cols);
scanf("%d", &rows);
scanf("%d", &cols);
while ((c = getchar()) != '\n');
if(rows < 0 || cols < 0) //error check for senseless lengths of rows or columns
{
fprintf(stderr,"Error: Invalid number of columns or rows.");
exit(2);
}
else
{
rows = rows + 2; //rows and cols incremented to add border around
cols = cols + 2;
int **table = makeTable(rows, cols);
int tableFilled = fillTable(table, rows, cols);
if(tableFilled == 0)
{
int **workTable = makeWorkTable(table, rows, cols);
int temp = 1;
if(findStartPos(table, workTable, rows, cols))
{
fillTableWithPaths(workTable, rows, cols);
temp = findEndPos(table, workTable, rows, cols);
}
if(temp == 0 || temp == 1)
{
int i, j;
for(i = 1; i < rows - 1; i++) //print the maze with the path and without the border
{
for(j = 1; j < cols - 1; j++)
{
printf("%c", table[i][j]);
}
printf("%s", "\n");
}
}
freeSpace(table, workTable, rows);
}
else
{
fprintf(stderr,"Error: Invalid input with the specified rows and columns.");
exit(2);
}
}
return 0;
}
void doPrintGenes(char *chromName, struct dnaSeq *seq)
{
struct genePred *genes = NULL;
struct genePred *gene = NULL;
struct snp *snps = NULL;
struct snp *snp = NULL;
int startPos = 0;
int endPos = 0;
int exonPos = 0;
genes = readGenes(chromName);
for (gene = genes; gene != NULL; gene = gene->next)
{
// printf("gene = %s %s:%d-%d\n", gene->name, chromName, gene->txStart, gene->txEnd);
snps = readSnpsFromGene(gene, chromName);
for (snp = snps; snp != NULL; snp = snp->next)
{
// for each SNP, figure out flanking start and stop
// first figure out which exon contains the snp
exonPos = findExonPos(gene, snp->chromStart);
// exonPos will return -1 if the position isn't in any exon
if (exonPos == -1) continue;
// exonPos should also never be 0
if (exonPos == 0) continue;
// printf(" snp %s at %d\n", snp->name, snp->chromStart);
// printf(" exonPos = %d\n", exonPos);
startPos = findStartPos(FLANKSIZE, snp->chromStart, gene, exonPos);
endPos = findEndPos(FLANKSIZE, snp->chromStart, gene, exonPos);
// printf("flank start = %d, flank end = %d\n", startPos, endPos);
printExons(snp->name, gene, chromName, startPos, endPos, seq);
}
snpFreeList(&snps);
}
geneFreeList(&genes);
}
