Esempio n. 1
0
void Foam::CV2D::removeSurfacePointPairs()
{
    for
    (
        Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
        vit != finite_vertices_end();
        ++vit
    )
    {
        if (vit->index() >= startOfSurfacePointPairs_)
        {
            remove(vit);
        }
    }
}
Esempio n. 2
0
void Foam::CV2D::writeTriangles(const fileName& fName, bool internalOnly) const
{
    Info<< "Writing triangles to " << fName << nl << endl;
    OFstream str(fName);

    labelList vertexMap(number_of_vertices(), -2);
    label verti = 0;

    for
    (
        Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
        vit != finite_vertices_end();
        ++vit
    )
    {
        if (!internalOnly || !vit->farPoint())
        {
            vertexMap[vit->index()] = verti++;
            meshTools::writeOBJ(str, toPoint3D(vit->point()));
        }
    }

    for
    (
        Triangulation::Finite_faces_iterator fit = finite_faces_begin();
        fit != finite_faces_end();
        ++fit
    )
    {
        if
        (
            !internalOnly
         || (
                fit->vertex(0)->internalOrBoundaryPoint()
             || fit->vertex(1)->internalOrBoundaryPoint()
             || fit->vertex(2)->internalOrBoundaryPoint()
            )
        )
        {
            str << "f";
            for (label i = 0; i < 3; ++i)
            {
                str << " " << vertexMap[fit->vertex(i)->index()] + 1;
            }
            str << nl;
        }
    }
}
Esempio n. 3
0
void Foam::CV2D::writePoints(const fileName& fName, bool internalOnly) const
{
    Info<< "Writing points to " << fName << nl << endl;
    OFstream str(fName);

    for
    (
        Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
        vit != finite_vertices_end();
        ++vit
    )
    {
        if (!internalOnly || vit->internalOrBoundaryPoint())
        {
            meshTools::writeOBJ(str, toPoint3D(vit->point()));
        }
    }
}
void Foam::conformalVoronoiMesh::cellSizeMeshOverlapsBackground() const
{
    const cellShapeControlMesh& cellSizeMesh =
        cellShapeControl_.shapeControlMesh();

    DynamicList<Foam::point> pts(number_of_vertices());

    for
    (
        Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
        vit != finite_vertices_end();
        ++vit
    )
    {
        if (vit->internalOrBoundaryPoint() && !vit->referred())
        {
            pts.append(topoint(vit->point()));
        }
    }

    boundBox bb(pts);

    boundBox cellSizeMeshBb = cellSizeMesh.bounds();

    bool fullyContained = true;

    if (!cellSizeMeshBb.contains(bb))
    {
        Pout<< "Triangulation not fully contained in cell size mesh."
            << endl;

        Pout<< "Cell Size Mesh Bounds = " << cellSizeMesh.bounds() << endl;
        Pout<< "foamyHexMesh Bounds         = " << bb << endl;

        fullyContained = false;
    }

    reduce(fullyContained, andOp<unsigned int>());

    Info<< "Triangulation is "
        << (fullyContained ? "fully" : "not fully")
        << " contained in the cell size mesh"
        << endl;
}
Foam::label Foam::cellShapeControlMesh::removePoints()
{
    label nRemoved = 0;
    for
    (
        CellSizeDelaunay::Finite_vertices_iterator vit =
            finite_vertices_begin();
        vit != finite_vertices_end();
        ++vit
    )
    {
        std::list<Vertex_handle> verts;
        adjacent_vertices(vit, std::back_inserter(verts));

        bool removePt = true;
        for
        (
            std::list<Vertex_handle>::iterator aVit = verts.begin();
            aVit != verts.end();
            ++aVit
        )
        {
            Vertex_handle avh = *aVit;

            scalar diff =
                mag(avh->targetCellSize() - vit->targetCellSize())
               /max(vit->targetCellSize(), 1e-6);

            if (diff > 0.05)
            {
                removePt = false;
            }
        }

        if (removePt)
        {
            remove(vit);
            nRemoved++;
        }
    }

    return nRemoved;
}
void DualPolyhedron_3::initialize()
{
	DEBUG_START;
	/*
	 * FIXME: Remove these two loops when local initialization will be
	 * implemented
	 */
	for (SupportItem &item : items)
		item.associations.clear();
	for (auto I = cells_begin(), E = cells_end(); I != E; ++I)
		I->info().associations.clear();

	for (auto I = finite_vertices_begin(), E = finite_vertices_end();
			I != E; ++I)
		associateVertex(I);

	if (getenv("INTERNAL_CHECK"))
		verify();
	DEBUG_END;
}
Foam::boundBox Foam::cellShapeControlMesh::bounds() const
{
    DynamicList<Foam::point> pts(number_of_vertices());

    for
    (
        Finite_vertices_iterator vit = finite_vertices_begin();
        vit != finite_vertices_end();
        ++vit
    )
    {
        if (vit->real())
        {
            pts.append(topoint(vit->point()));
        }
    }

    boundBox bb(pts);

    return bb;
}
Esempio n. 8
0
void Foam::CV2D::calcDual
(
    point2DField& dualPoints,
    faceList& dualFaces,
    wordList& patchNames,
    labelList& patchSizes,
    EdgeMap<label>& mapEdgesRegion,
    EdgeMap<label>& indirectPatchEdge
) const
{
    // Dual points stored in triangle order.
    dualPoints.setSize(number_of_faces());
    label dualVerti = 0;

    for
    (
        Triangulation::Finite_faces_iterator fit = finite_faces_begin();
        fit != finite_faces_end();
        ++fit
    )
    {
        if
        (
            fit->vertex(0)->internalOrBoundaryPoint()
         || fit->vertex(1)->internalOrBoundaryPoint()
         || fit->vertex(2)->internalOrBoundaryPoint()
        )
        {
            fit->faceIndex() = dualVerti;

            dualPoints[dualVerti++] = toPoint2D(circumcenter(fit));
        }
        else
        {
            fit->faceIndex() = -1;
        }
    }

    dualPoints.setSize(dualVerti);

    extractPatches(patchNames, patchSizes, mapEdgesRegion, indirectPatchEdge);

    forAll(patchNames, patchi)
    {
        Info<< "Patch " << patchNames[patchi]
            << " has size " << patchSizes[patchi] << endl;
    }

    // Create dual faces
    // ~~~~~~~~~~~~~~~~~

    dualFaces.setSize(number_of_vertices());
    label dualFacei = 0;
    labelList faceVerts(maxNvert);

    for
    (
        Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
        vit != finite_vertices_end();
        ++vit
    )
    {
        if (vit->internalOrBoundaryPoint())
        {
            Face_circulator fcStart = incident_faces(vit);
            Face_circulator fc = fcStart;
            label verti = 0;

            do
            {
                if (!is_infinite(fc))
                {
                    if (fc->faceIndex() < 0)
                    {
                        FatalErrorInFunction
                         << "Dual face uses vertex defined by a triangle"
                            " defined by an external point"
                            << exit(FatalError);
                    }

                    // Look up the index of the triangle
                    faceVerts[verti++] = fc->faceIndex();
                }
            } while (++fc != fcStart);

            if (faceVerts.size() > 2)
            {
                dualFaces[dualFacei++] =
                    face(labelList::subList(faceVerts, verti));
            }
            else
            {
                Info<< "From triangle point:" << vit->index()
                    << " coord:" << toPoint2D(vit->point())
                    << " generated illegal dualFace:" << faceVerts
                    << endl;
            }
        }
    }

    dualFaces.setSize(dualFacei);
}
Esempio n. 9
0
void Foam::CV2D::writeFaces(const fileName& fName, bool internalOnly) const
{
    Info<< "Writing dual faces to " << fName << nl << endl;
    OFstream str(fName);

    label dualVerti = 0;

    for
    (
        Triangulation::Finite_faces_iterator fit = finite_faces_begin();
        fit != finite_faces_end();
        ++fit
    )
    {
        if
        (
            !internalOnly
         || (
                fit->vertex(0)->internalOrBoundaryPoint()
             || fit->vertex(1)->internalOrBoundaryPoint()
             || fit->vertex(2)->internalOrBoundaryPoint()
            )
        )
        {
            fit->faceIndex() = dualVerti++;
            meshTools::writeOBJ(str, toPoint3D(circumcenter(fit)));
        }
        else
        {
            fit->faceIndex() = -1;
        }
    }

    for
    (
        Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
        vit != finite_vertices_end();
        ++vit
    )
    {
        if (!internalOnly || vit->internalOrBoundaryPoint())
        {
            Face_circulator fcStart = incident_faces(vit);
            Face_circulator fc = fcStart;

            str<< 'f';

            do
            {
                if (!is_infinite(fc))
                {
                    if (fc->faceIndex() < 0)
                    {
                        FatalErrorInFunction
                         << "Dual face uses vertex defined by a triangle"
                            " defined by an external point"
                            << exit(FatalError);
                    }

                    str<< ' ' << fc->faceIndex() + 1;
                }
            } while (++fc != fcStart);

            str<< nl;
        }
    }
}
Esempio n. 10
0
void Foam::cellShapeControlMesh::distribute
(
    const backgroundMeshDecomposition& decomposition
)
{
    DynamicList<Foam::point> points(number_of_vertices());
    DynamicList<scalar> sizes(number_of_vertices());
    DynamicList<tensor> alignments(number_of_vertices());

    DynamicList<Vb> farPts(8);

    for
    (
        Finite_vertices_iterator vit = finite_vertices_begin();
        vit != finite_vertices_end();
        ++vit
    )
    {
        if (vit->real())
        {
            points.append(topoint(vit->point()));
            sizes.append(vit->targetCellSize());
            alignments.append(vit->alignment());
        }
        else if (vit->farPoint())
        {
            farPts.append
            (
                Vb
                (
                    vit->point(),
                    -1,
                    Vb::vtFar,
                    Pstream::myProcNo()
                )
            );

            farPts.last().targetCellSize() = vit->targetCellSize();
            farPts.last().alignment() = vit->alignment();
        }
    }

    autoPtr<mapDistribute> mapDist =
        DistributedDelaunayMesh<CellSizeDelaunay>::distribute
        (
            decomposition,
            points
        );

    mapDist().distribute(sizes);
    mapDist().distribute(alignments);

    // Reset the entire tessellation
    DelaunayMesh<CellSizeDelaunay>::reset();


    // Internal points have to be inserted first
    DynamicList<Vb> verticesToInsert(points.size());


    forAll(farPts, ptI)
    {
        verticesToInsert.append(farPts[ptI]);
    }
Esempio n. 11
0
Foam::cellShapeControlMesh::cellShapeControlMesh(const Time& runTime)
:
    DistributedDelaunayMesh<CellSizeDelaunay>
    (
        runTime,
        meshSubDir
    ),
    runTime_(runTime),
    defaultCellSize_(0.0)
{
    if (this->vertexCount())
    {
        fvMesh mesh
        (
            IOobject
            (
                meshSubDir,
                runTime.timeName(),
                runTime,
                IOobject::READ_IF_PRESENT,
                IOobject::NO_WRITE
            )
        );

        if (mesh.nPoints() == this->vertexCount())
        {
            pointScalarField sizes
            (
                IOobject
                (
                    "sizes",
                    runTime.timeName(),
                    meshSubDir,
                    runTime,
                    IOobject::READ_IF_PRESENT,
                    IOobject::NO_WRITE,
                    false
                ),
                pointMesh::New(mesh)
            );

            triadIOField alignments
            (
                IOobject
                (
                    "alignments",
                    mesh.time().timeName(),
                    meshSubDir,
                    mesh.time(),
                    IOobject::READ_IF_PRESENT,
                    IOobject::AUTO_WRITE,
                    false
                )
            );

            if
            (
                sizes.size() == this->vertexCount()
             && alignments.size() == this->vertexCount()
            )
            {
                for
                (
                    Finite_vertices_iterator vit = finite_vertices_begin();
                    vit != finite_vertices_end();
                    ++vit
                )
                {
                    vit->targetCellSize() = sizes[vit->index()];
                    vit->alignment() = alignments[vit->index()];
                }
            }
            else
            {
                FatalErrorInFunction
                    << "Cell size point field is not the same size as the "
                    << "mesh."
                    << abort(FatalError);
            }
        }
    }
}
Esempio n. 12
0
void Foam::CV2D::newPoints()
{
    const scalar relaxation = relaxationModel_->relaxation();

    Info<< "Relaxation = " << relaxation << endl;

    Field<point2D> dualVertices(number_of_faces());

    label dualVerti = 0;

    // Find the dual point of each tetrahedron and assign it an index.
    for
    (
        Triangulation::Finite_faces_iterator fit = finite_faces_begin();
        fit != finite_faces_end();
        ++fit
    )
    {
        fit->faceIndex() = -1;

        if
        (
            fit->vertex(0)->internalOrBoundaryPoint()
         || fit->vertex(1)->internalOrBoundaryPoint()
         || fit->vertex(2)->internalOrBoundaryPoint()
        )
        {
            fit->faceIndex() = dualVerti;

            dualVertices[dualVerti] = toPoint2D(circumcenter(fit));

            dualVerti++;
        }
    }

    dualVertices.setSize(dualVerti);

    Field<vector2D> displacementAccumulator
    (
        startOfSurfacePointPairs_,
        vector2D::zero
    );

    // Calculate target size and alignment for vertices
    scalarField sizes
    (
        number_of_vertices(),
        meshControls().minCellSize()
    );

    Field<vector2D> alignments
    (
        number_of_vertices(),
        vector2D(1, 0)
    );

    for
    (
        Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
        vit != finite_vertices_end();
        ++vit
    )
    {
        if (vit->internalOrBoundaryPoint())
        {
            point2D vert = toPoint2D(vit->point());

            // alignment and size determination
            pointIndexHit pHit;
            label hitSurface = -1;

            qSurf_.findSurfaceNearest
            (
                toPoint3D(vert),
                meshControls().span2(),
                pHit,
                hitSurface
            );

            if (pHit.hit())
            {
                vectorField norm(1);
                allGeometry_[hitSurface].getNormal
                (
                    List<pointIndexHit>(1, pHit),
                    norm
                );

                alignments[vit->index()] = toPoint2D(norm[0]);

                sizes[vit->index()] =
                    cellSizeControl_.cellSize
                    (
                        toPoint3D(vit->point())
                    );
            }
        }
    }

    // Info<< "Calculated alignments" << endl;

    scalar cosAlignmentAcceptanceAngle = 0.68;

    // Upper and lower edge length ratios for weight
    scalar u = 1.0;
    scalar l = 0.7;

    PackedBoolList pointToBeRetained(startOfSurfacePointPairs_, true);

    std::list<Point> pointsToInsert;

    for
    (
        Triangulation::Finite_edges_iterator eit = finite_edges_begin();
        eit != finite_edges_end();
        eit++
    )
    {
        Vertex_handle vA = eit->first->vertex(cw(eit->second));
        Vertex_handle vB = eit->first->vertex(ccw(eit->second));

        if (!vA->internalOrBoundaryPoint() || !vB->internalOrBoundaryPoint())
        {
            continue;
        }

        const point2D& dualV1 = dualVertices[eit->first->faceIndex()];
        const point2D& dualV2 =
            dualVertices[eit->first->neighbor(eit->second)->faceIndex()];

        scalar dualEdgeLength = mag(dualV1 - dualV2);

        point2D dVA = toPoint2D(vA->point());
        point2D dVB = toPoint2D(vB->point());

        Field<vector2D> alignmentDirsA(2);

        alignmentDirsA[0] = alignments[vA->index()];
        alignmentDirsA[1] = vector2D
        (
           -alignmentDirsA[0].y(),
            alignmentDirsA[0].x()
        );

        Field<vector2D> alignmentDirsB(2);

        alignmentDirsB[0] = alignments[vB->index()];
        alignmentDirsB[1] = vector2D
        (
           -alignmentDirsB[0].y(),
            alignmentDirsB[0].x()
        );

        Field<vector2D> alignmentDirs(alignmentDirsA);

        forAll(alignmentDirsA, aA)
        {
            const vector2D& a(alignmentDirsA[aA]);

            scalar maxDotProduct = 0.0;

            forAll(alignmentDirsB, aB)
            {
                const vector2D& b(alignmentDirsB[aB]);

                scalar dotProduct = a & b;

                if (mag(dotProduct) > maxDotProduct)
                {
                    maxDotProduct = mag(dotProduct);

                    alignmentDirs[aA] = a + sign(dotProduct)*b;

                    alignmentDirs[aA] /= mag(alignmentDirs[aA]);
                }
            }
        }

        vector2D rAB = dVA - dVB;

        scalar rABMag = mag(rAB);

        forAll(alignmentDirs, aD)
        {
            vector2D& alignmentDir = alignmentDirs[aD];

            if ((rAB & alignmentDir) < 0)
            {
                // swap the direction of the alignment so that has the
                // same sense as rAB
                alignmentDir *= -1;
            }

            scalar alignmentDotProd = ((rAB/rABMag) & alignmentDir);

            if (alignmentDotProd > cosAlignmentAcceptanceAngle)
            {
                scalar targetFaceSize =
                    0.5*(sizes[vA->index()] + sizes[vB->index()]);

                // Test for changing aspect ratio on second alignment (first
                // alignment is neartest surface normal)
                // if (aD == 1)
                // {
                //     targetFaceSize *= 2.0;
                // }

                alignmentDir *= 0.5*targetFaceSize;

                vector2D delta = alignmentDir - 0.5*rAB;

                if (dualEdgeLength < 0.7*targetFaceSize)
                {
                    delta *= 0;
                }
                else if (dualEdgeLength < targetFaceSize)
                {
                    delta *=
                        (
                            dualEdgeLength
                           /(targetFaceSize*(u - l))
                          - 1/((u/l) - 1)
                        );
                }

                if
                (
                    vA->internalPoint()
                 && vB->internalPoint()
                 && rABMag > 1.75*targetFaceSize
                 && dualEdgeLength > 0.05*targetFaceSize
                 && alignmentDotProd > 0.93
                )
                {
                    // Point insertion
                    pointsToInsert.push_back(toPoint(0.5*(dVA + dVB)));
                }
                else if
                (
                    (vA->internalPoint() || vB->internalPoint())
                 && rABMag < 0.65*targetFaceSize
                )
                {
                    // Point removal

                    // Only insert a point at the midpoint of the short edge
                    // if neither attached point has already been identified
                    // to be removed.
                    if
                    (
                        pointToBeRetained[vA->index()] == true
                     && pointToBeRetained[vB->index()] == true
                    )
                    {
                        pointsToInsert.push_back(toPoint(0.5*(dVA + dVB)));
                    }

                    if (vA->internalPoint())
                    {
                        pointToBeRetained[vA->index()] = false;
                    }

                    if (vB->internalPoint())
                    {
                        pointToBeRetained[vB->index()] = false;
                    }
                }
                else
                {
                    if (vA->internalPoint())
                    {
                        displacementAccumulator[vA->index()] += delta;
                    }

                    if (vB->internalPoint())
                    {
                        displacementAccumulator[vB->index()] += -delta;
                    }
                }
            }
        }
    }