// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void BadDataNeighborOrientationCheck::dataCheck()
{
setErrorCondition(0);
QVector<DataArrayPath> dataArrayPaths;
getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getGoodVoxelsArrayPath().getDataContainerName());
QVector<size_t> cDims(1, 1);
m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_GoodVoxelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getGoodVoxelsArrayPath()); }
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<unsigned int>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 4;
m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
getDataContainerArray()->validateNumberOfTuples(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateMisorientationColors::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
QVector<DataArrayPath> dataArrayPaths;
QVector<size_t> cDims(1, 1);
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
cDims[0] = 4;
m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }
cDims[0] = 1;
m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 3;
tempPath.update(getCellPhasesArrayPath().getDataContainerName(), getCellPhasesArrayPath().getAttributeMatrixName(), getMisorientationColorArrayName() );
m_MisorientationColorPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<uint8_t>, AbstractFilter, uint8_t>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_MisorientationColorPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_MisorientationColor = m_MisorientationColorPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
// The good voxels array is optional, If it is available we are going to use it, otherwise we are going to create it
cDims[0] = 1;
if (getUseGoodVoxels() == true)
{
// The good voxels array is optional, If it is available we are going to use it, otherwise we are going to create it
cDims[0] = 1;
m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_GoodVoxelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getGoodVoxelsArrayPath()); }
}
else
{
m_GoodVoxels = NULL;
}
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindFeaturePhases::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
QVector<DataArrayPath> dataArrayPaths;
QVector<size_t> cDims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getFeatureIdsArrayPath()); }
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
m_FeaturePhasesPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this, getFeaturePhasesArrayPath(), 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeaturePhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeaturePhases = m_FeaturePhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
getDataContainerArray()->validateNumberOfTuples(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindVolFractions::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setVolFractionsArrayPath(reader->readDataArrayPath("VolFractionsArrayPath", getVolFractionsArrayPath()));
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindFeaturePhases::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setFeaturePhasesArrayPath(reader->readDataArrayPath("FeaturePhasesArrayPath", getFeaturePhasesArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void LosAlamosFFTWriter::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setCellEulerAnglesArrayPath(reader->readDataArrayPath("CellEulerAnglesArrayPath", getCellEulerAnglesArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setOutputFile( reader->readString( "OutputFile", getOutputFile() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void INLWriter::dataCheck()
{
setErrorCondition(0);
getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getFeatureIdsArrayPath().getDataContainerName());
if (getOutputFile().isEmpty() == true)
{
QString ss = QObject::tr("The output file must be set");
setErrorCondition(-1);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
QFileInfo fi(getOutputFile());
QDir parentPath = fi.path();
if (parentPath.exists() == false)
{
QString ss = QObject::tr("The directory path for the output file does not exist. DREAM.3D will attempt to create this path during execution of the filter");
notifyWarningMessage(getHumanLabel(), ss, -1);
}
QVector<DataArrayPath> cellDataArrayPaths;
QVector<DataArrayPath> ensembleDataArrayPaths;
QVector<size_t> cDims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { cellDataArrayPaths.push_back(getFeatureIdsArrayPath()); }
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { cellDataArrayPaths.push_back(getCellPhasesArrayPath()); }
m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { ensembleDataArrayPaths.push_back(getCrystalStructuresArrayPath()); }
m_NumFeaturesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getNumFeaturesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_NumFeaturesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_NumFeatures = m_NumFeaturesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { ensembleDataArrayPaths.push_back(getNumFeaturesArrayPath()); }
m_MaterialNamePtr = getDataContainerArray()->getPrereqArrayFromPath<StringDataArray, AbstractFilter>(this, getMaterialNameArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if(getErrorCondition() >= 0) { ensembleDataArrayPaths.push_back(getMaterialNameArrayPath()); }
cDims[0] = 3;
m_CellEulerAnglesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getCellEulerAnglesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellEulerAngles = m_CellEulerAnglesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { cellDataArrayPaths.push_back(getCellEulerAnglesArrayPath()); }
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, cellDataArrayPaths);
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, ensembleDataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindAvgOrientations::dataCheck()
{
setErrorCondition(0);
QVector<DataArrayPath> dataArrayPaths;
QVector<size_t> cDims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); /* Now assign the raw pointer to data from the DataArray<T> object */
}
if(getErrorCondition() >= 0) {
dataArrayPaths.push_back(getFeatureIdsArrayPath());
}
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); /* Now assign the raw pointer to data from the DataArray<T> object */
}
if(getErrorCondition() >= 0) {
dataArrayPaths.push_back(getCellPhasesArrayPath());
}
cDims[0] = 4;
m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_Quats = m_QuatsPtr.lock()->getPointer(0); /* Now assign the raw pointer to data from the DataArray<T> object */
}
if(getErrorCondition() >= 0) {
dataArrayPaths.push_back(getQuatsArrayPath());
}
m_AvgQuatsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, getAvgQuatsArrayPath(), 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_AvgQuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_AvgQuats = m_AvgQuatsPtr.lock()->getPointer(0); /* Now assign the raw pointer to data from the DataArray<T> object */
}
cDims[0] = 3;
m_FeatureEulerAnglesPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, getAvgEulerAnglesArrayPath(), 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_FeatureEulerAngles = m_FeatureEulerAnglesPtr.lock()->getPointer(0); /* Now assign the raw pointer to data from the DataArray<T> object */
}
cDims[0] = 1;
m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); /* Now assign the raw pointer to data from the DataArray<T> object */
}
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void EBSDSegmentFeatures::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
SegmentFeatures::dataCheck();
if(getErrorCondition() < 0) { return; }
// Set the DataContainerName for the Parent Class (SegmentFeatures) to Use
setDataContainerName(m_QuatsArrayPath.getDataContainerName());
DataContainer::Pointer m = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, getDataContainerName(), false);
if(getErrorCondition() < 0 || NULL == m.get()) { return; }
QVector<size_t> tDims(1, 0);
m->createNonPrereqAttributeMatrix<AbstractFilter>(this, getCellFeatureAttributeMatrixName(), tDims, DREAM3D::AttributeMatrixType::CellFeature);
QVector<DataArrayPath> dataArrayPaths;
QVector<size_t> cDims(1, 1);
if(m_UseGoodVoxels == true)
{
m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_GoodVoxelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getGoodVoxelsArrayPath()); }
}
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
tempPath.update(getDataContainerName(), m_QuatsArrayPath.getAttributeMatrixName(), getFeatureIdsArrayName() );
m_FeatureIdsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(getDataContainerName(), getCellFeatureAttributeMatrixName(), getActiveArrayName() );
m_ActivePtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<bool>, AbstractFilter, bool>(this, tempPath, true, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_ActivePtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Active = m_ActivePtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 4;
m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void WriteStatsGenOdfAngleFile::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setConvertToDegrees(reader->readValue("ConvertToDegrees", getConvertToDegrees() ) );
setOutputFile( reader->readString("OutputFile", getOutputFile()));
setUseGoodVoxels(reader->readValue("UseGoodVoxels", getUseGoodVoxels() ) );
setGoodVoxelsArrayPath(reader->readDataArrayPath("GoodVoxelsArrayPath", getGoodVoxelsArrayPath() ) );
setCellEulerAnglesArrayPath(reader->readDataArrayPath("CellEulerAnglesArrayPath", getCellEulerAnglesArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
void FindKernelAvgMisorientations::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setKernelAverageMisorientationsArrayName(reader->readString("KernelAverageMisorientationsArrayName", getKernelAverageMisorientationsArrayName() ) );
setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setKernelSize( reader->readIntVec3("KernelSize", getKernelSize() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindAvgOrientations::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setAvgEulerAnglesArrayPath(reader->readDataArrayPath("AvgEulerAnglesArrayPath", getAvgEulerAnglesArrayPath() ) );
setAvgQuatsArrayPath(reader->readDataArrayPath("AvgQuatsArrayPath", getAvgQuatsArrayPath() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void BadDataNeighborOrientationCheck::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setGoodVoxelsArrayPath(reader->readDataArrayPath("GoodVoxelsArrayPath", getGoodVoxelsArrayPath() ) );
setMisorientationTolerance( reader->readValue("MisorientationTolerance", getMisorientationTolerance()) );
setNumberOfNeighbors( reader->readValue("NumberOfNeighbors", getNumberOfNeighbors()) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void INLWriter::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setCellEulerAnglesArrayPath(reader->readDataArrayPath("CellEulerAnglesArrayPath", getCellEulerAnglesArrayPath() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setNumFeaturesArrayPath(reader->readDataArrayPath("NumFeaturesArrayPath", getNumFeaturesArrayPath() ) );
setMaterialNameArrayPath(reader->readDataArrayPath("MaterialNameArrayPath", getMaterialNameArrayPath()));
setOutputFile( reader->readString( "OutputFile", getOutputFile() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
void FindFeatureReferenceCAxisMisorientations::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setFeatureReferenceCAxisMisorientationsArrayName(reader->readString("FeatureReferenceCAxisMisorientationsArrayName", getFeatureReferenceCAxisMisorientationsArrayName() ) );
setFeatureStdevCAxisMisorientationsArrayName(reader->readString("FeatureStdevCAxisMisorientationsArrayName", getFeatureStdevCAxisMisorientationsArrayName() ) );
setFeatureAvgCAxisMisorientationsArrayName(reader->readString("FeatureAvgCAxisMisorientationsArrayName", getFeatureAvgCAxisMisorientationsArrayName() ) );
setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
setAvgCAxesArrayPath(reader->readDataArrayPath("AvgCAxesArrayPath", getAvgCAxesArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void AlignSectionsMutualInformation::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
AlignSections::readFilterParameters(reader, index);
reader->openFilterGroup(this, index);
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setUseGoodVoxels(reader->readValue("UseGoodVoxels", getUseGoodVoxels() ) );
setGoodVoxelsArrayPath(reader->readDataArrayPath("GoodVoxelsArrayPath", getGoodVoxelsArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
setMisorientationTolerance( reader->readValue("MisorientationTolerance", getMisorientationTolerance()) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void WritePoleFigure::dataCheck()
{
setErrorCondition(0);
QDir path(getOutputPath());
getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getCellPhasesArrayPath().getDataContainerName());
if (m_OutputPath.isEmpty() == true)
{
setErrorCondition(-1003);
notifyErrorMessage(getHumanLabel(), "The output directory must be set", getErrorCondition());
}
else if (path.exists() == false)
{
QString ss = QObject::tr("The directory path for the output file does not exist. DREAM.3D will attempt to create this path during execution of the filter");
notifyWarningMessage(getHumanLabel(), ss, -1);
}
QVector<DataArrayPath> dataArrayPaths;
QVector<size_t> cDims(1, 3);
m_CellEulerAnglesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getCellEulerAnglesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellEulerAngles = m_CellEulerAnglesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellEulerAnglesArrayPath()); }
cDims[0] = 1;
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
// The good voxels array is optional, If it is available we are going to use it, otherwise we are going to create it
cDims[0] = 1;
m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if (NULL != m_GoodVoxelsPtr.lock().get())
{
if( NULL != m_GoodVoxelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getGoodVoxelsArrayPath()); }
}
else
{
m_GoodVoxels = NULL;
}
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateIPFColors::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setUseGoodVoxels(reader->readValue("UseGoodVoxels", getUseGoodVoxels() ) );
setGoodVoxelsArrayPath(reader->readDataArrayPath("GoodVoxelsArrayPath", getGoodVoxelsArrayPath() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setCellEulerAnglesArrayPath(reader->readDataArrayPath("CellEulerAnglesArrayPath", getCellEulerAnglesArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setCellIPFColorsArrayName(reader->readString("CellIPFColorsArrayName", getCellIPFColorsArrayName() ) );
setReferenceDir( reader->readFloatVec3("ReferenceDir", getReferenceDir() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateMisorientationColors::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setUseGoodVoxels(reader->readValue("UseGoodVoxels", getUseGoodVoxels() ) );
setMisorientationColorArrayName(reader->readString("MisorientationColorArrayName", getMisorientationColorArrayName() ) );
setGoodVoxelsArrayPath(reader->readDataArrayPath("GoodVoxelsArrayPath", getGoodVoxelsArrayPath() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setReferenceAxis( reader->readFloatVec3("ReferenceAxis", getReferenceAxis() ) );
setReferenceAngle( reader->readValue("ReferenceAngle", getReferenceAngle() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void EBSDSegmentFeatures::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setActiveArrayName(reader->readString("ActiveArrayName", getActiveArrayName() ) );
setCellFeatureAttributeMatrixName(reader->readString("CellFeatureAttributeMatrixName", getCellFeatureAttributeMatrixName() ) );
setFeatureIdsArrayName(reader->readString("FeatureIdsArrayName", getFeatureIdsArrayName() ) );
setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setGoodVoxelsArrayPath(reader->readDataArrayPath("GoodVoxelsArrayPath", getGoodVoxelsArrayPath() ) );
setUseGoodVoxels(reader->readValue("UseGoodVoxels", getUseGoodVoxels() ) );
setMisorientationTolerance( reader->readValue("MisorientationTolerance", getMisorientationTolerance()) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void WritePoleFigure::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setGoodVoxelsArrayPath(reader->readDataArrayPath("GoodVoxelsArrayPath", getGoodVoxelsArrayPath() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setCellEulerAnglesArrayPath(reader->readDataArrayPath("CellEulerAnglesArrayPath", getCellEulerAnglesArrayPath() ) );
setImagePrefix( reader->readString("ImagePrefix", getImagePrefix()));
setOutputPath( reader->readString("OutputPath", getOutputPath()));
setImageFormat( reader->readValue("ImageFormat", getImageFormat()));
setImageLayout( reader->readValue("ImageLayout", getImageLayout()));
setImageSize( reader->readValue("ImageSize", getImageSize()));
setLambertSize( reader->readValue("LambertSize", getLambertSize()));
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void AdaptiveAlignmentMutualInformation::dataCheck()
{
setErrorCondition(0);
// Set the DataContainerName and AttributematrixName for the Parent Class (AdaptiveAlignment) to Use.
setDataContainerName(m_QuatsArrayPath.getDataContainerName());
setCellAttributeMatrixName(m_QuatsArrayPath.getAttributeMatrixName());
AdaptiveAlignment::dataCheck();
if (getErrorCondition() < 0) { return; }
INIT_DataArray(m_FeatureCounts, int32_t);
QVector<DataArrayPath> dataArrayPaths;
QVector<size_t> cDims(1, 4);
m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if (NULL != m_QuatsPtr.lock().get()) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_Quats = m_QuatsPtr.lock()->getPointer(0);
} /* Now assign the raw pointer to data from the DataArray<T> object */
if (getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }
cDims[0] = 1;
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray< int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if (NULL != m_CellPhasesPtr.lock().get()) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0);
} /* Now assign the raw pointer to data from the DataArray<T> object */
if (getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
if (m_UseGoodVoxels == true)
{
m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if (NULL != m_GoodVoxelsPtr.lock().get()) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0);
} /* Now assign the raw pointer to data from the DataArray<T> object */
if (getErrorCondition() >= 0) { dataArrayPaths.push_back(getGoodVoxelsArrayPath()); }
}
m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<unsigned int>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if (NULL != m_CrystalStructuresPtr.lock().get()) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0);
} /* Now assign the raw pointer to data from the DataArray<T> object */
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindFeatureReferenceCAxisMisorientations::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getFeatureIdsArrayPath().getDataContainerName());
QVector<DataArrayPath> dataArrayPaths;
QVector<size_t> cDims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getFeatureIdsArrayPath()); }
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
tempPath.update(m_AvgCAxesArrayPath.getDataContainerName(), getAvgCAxesArrayPath().getAttributeMatrixName(), getFeatureAvgCAxisMisorientationsArrayName() );
m_FeatureAvgCAxisMisorientationsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureAvgCAxisMisorientationsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureAvgCAxisMisorientations = m_FeatureAvgCAxisMisorientationsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(m_AvgCAxesArrayPath.getDataContainerName(), getAvgCAxesArrayPath().getAttributeMatrixName(), getFeatureStdevCAxisMisorientationsArrayName() );
m_FeatureStdevCAxisMisorientationsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureStdevCAxisMisorientationsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureStdevCAxisMisorientations = m_FeatureStdevCAxisMisorientationsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(m_FeatureIdsArrayPath.getDataContainerName(), getFeatureIdsArrayPath().getAttributeMatrixName(), getFeatureReferenceCAxisMisorientationsArrayName() );
m_FeatureReferenceCAxisMisorientationsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureReferenceCAxisMisorientationsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureReferenceCAxisMisorientations = m_FeatureReferenceCAxisMisorientationsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 3;
m_AvgCAxesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getAvgCAxesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_AvgCAxesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AvgCAxes = m_AvgCAxesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 4;
m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void MergeColonies::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
GroupFeatures::readFilterParameters(reader, index);
reader->openFilterGroup(this, index);
setNewCellFeatureAttributeMatrixName(reader->readString("NewCellFeatureAttributeMatrixName", getNewCellFeatureAttributeMatrixName() ) );
setActiveArrayName(reader->readString("ActiveArrayName", getActiveArrayName() ) );
setFeatureParentIdsArrayName(reader->readString("FeatureParentIdsArrayName", getFeatureParentIdsArrayName() ) );
setGlobAlphaArrayName(reader->readString("GlobAlphaArrayName", getGlobAlphaArrayName() ) );
setCellParentIdsArrayName(reader->readString("CellParentIdsArrayName", getCellParentIdsArrayName() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setAvgQuatsArrayPath(reader->readDataArrayPath("AvgQuatsArrayPath", getAvgQuatsArrayPath() ) );
setFeaturePhasesArrayPath(reader->readDataArrayPath("FeaturePhasesArrayPath", getFeaturePhasesArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setAxisTolerance( reader->readValue("AxisTolerance", getAxisTolerance()) );
setAngleTolerance( reader->readValue("AngleTolerance", getAngleTolerance()) );
setIdentifyGlobAlpha( reader->readValue("IdentifyGlobAlpha", getIdentifyGlobAlpha()) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void EBSDSegmentFeatures::setupFilterParameters()
{
FilterParameterVector parameters;
parameters.push_back(DoubleFilterParameter::New("Misorientation Tolerance (Degrees)", "MisorientationTolerance", getMisorientationTolerance(), FilterParameter::Parameter));
QStringList linkedProps("GoodVoxelsArrayPath");
parameters.push_back(LinkedBooleanFilterParameter::New("Use Mask Array", "UseGoodVoxels", getUseGoodVoxels(), linkedProps, FilterParameter::Parameter));
parameters.push_back(SeparatorFilterParameter::New("Cell Data", FilterParameter::RequiredArray));
parameters.push_back(DataArraySelectionFilterParameter::New("Quaternions", "QuatsArrayPath", getQuatsArrayPath(), FilterParameter::RequiredArray));
parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray));
parameters.push_back(DataArraySelectionFilterParameter::New("Mask", "GoodVoxelsArrayPath", getGoodVoxelsArrayPath(), FilterParameter::RequiredArray));
parameters.push_back(SeparatorFilterParameter::New("Cell Ensemble Data", FilterParameter::RequiredArray));
parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray));
parameters.push_back(SeparatorFilterParameter::New("Cell Data", FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Cell Feature Ids", "FeatureIdsArrayName", getFeatureIdsArrayName(), FilterParameter::CreatedArray));
parameters.push_back(SeparatorFilterParameter::New("Cell Feature Data", FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Cell Feature Attribute Matrix", "CellFeatureAttributeMatrixName", getCellFeatureAttributeMatrixName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Active", "ActiveArrayName", getActiveArrayName(), FilterParameter::CreatedArray));
setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindAvgOrientations::setupFilterParameters()
{
FilterParameterVector parameters;
parameters.push_back(SeparatorFilterParameter::New("Element Data", FilterParameter::RequiredArray));
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateCategoryRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixObjectType::Element);
parameters.push_back(DataArraySelectionFilterParameter::New("Feature Ids", "FeatureIdsArrayPath", getFeatureIdsArrayPath(), FilterParameter::RequiredArray, req));
}
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateCategoryRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixObjectType::Element);
parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray, req));
}
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateCategoryRequirement(SIMPL::TypeNames::Float, 4, SIMPL::AttributeMatrixObjectType::Element);
parameters.push_back(DataArraySelectionFilterParameter::New("Quaternions", "QuatsArrayPath", getQuatsArrayPath(), FilterParameter::RequiredArray, req));
}
parameters.push_back(SeparatorFilterParameter::New("Ensemble Data", FilterParameter::RequiredArray));
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateCategoryRequirement(SIMPL::TypeNames::UInt32, 1, SIMPL::AttributeMatrixObjectType::Ensemble);
parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray, req));
}
parameters.push_back(SeparatorFilterParameter::New("Feature Data", FilterParameter::CreatedArray));
{
DataArrayCreationFilterParameter::RequirementType req = DataArrayCreationFilterParameter::CreateRequirement(SIMPL::AttributeMatrixObjectType::Feature);
parameters.push_back(DataArrayCreationFilterParameter::New("Average Quaternions", "AvgQuatsArrayPath", getAvgQuatsArrayPath(), FilterParameter::CreatedArray, req));
}
{
DataArrayCreationFilterParameter::RequirementType req = DataArrayCreationFilterParameter::CreateRequirement(SIMPL::AttributeMatrixObjectType::Feature);
parameters.push_back(DataArrayCreationFilterParameter::New("Average Euler Angles", "AvgEulerAnglesArrayPath", getAvgEulerAnglesArrayPath(), FilterParameter::CreatedArray, req));
}
setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateMisorientationColors::setupFilterParameters()
{
FilterParameterVector parameters;
parameters.push_back(FloatVec3FilterParameter::New("Reference Orientation Axis", "ReferenceAxis", getReferenceAxis(), FilterParameter::Parameter));
parameters.push_back(DoubleFilterParameter::New("Reference Orientation Angle (Degrees)", "ReferenceAngle", getReferenceAngle(), FilterParameter::Parameter));
QStringList linkedProps("GoodVoxelsArrayPath");
parameters.push_back(LinkedBooleanFilterParameter::New("Apply to Good Elements Only (Bad Elements Will Be Black)", "UseGoodVoxels", getUseGoodVoxels(), linkedProps, FilterParameter::Parameter));
parameters.push_back(SeparatorFilterParameter::New("Element Data", FilterParameter::RequiredArray));
parameters.push_back(DataArraySelectionFilterParameter::New("Quaternions", "QuatsArrayPath", getQuatsArrayPath(), FilterParameter::RequiredArray));
parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray));
parameters.push_back(DataArraySelectionFilterParameter::New("Mask", "GoodVoxelsArrayPath", getGoodVoxelsArrayPath(), FilterParameter::RequiredArray));
parameters.push_back(SeparatorFilterParameter::New("Ensemble Data", FilterParameter::RequiredArray));
parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray));
parameters.push_back(SeparatorFilterParameter::New("Element Data", FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("Misorientation Colors", "MisorientationColorArrayName", getMisorientationColorArrayName(), FilterParameter::CreatedArray));
setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void AlignSectionsMutualInformation::setupFilterParameters()
{
// getting the current parameters that were set by the parent and adding to it before resetting it
FilterParameterVector parameters = getFilterParameters();
parameters.push_front(DoubleFilterParameter::New("Misorientation Tolerance", "MisorientationTolerance", getMisorientationTolerance(), FilterParameter::Parameter));
QStringList linkedProps("GoodVoxelsArrayPath");
parameters.push_back(LinkedBooleanFilterParameter::New("Use Mask Array", "UseGoodVoxels", getUseGoodVoxels(), linkedProps, FilterParameter::Parameter));
parameters.push_back(SeparatorFilterParameter::New("Cell Data", FilterParameter::RequiredArray));
parameters.push_back(DataArraySelectionFilterParameter::New("Quaternions", "QuatsArrayPath", getQuatsArrayPath(), FilterParameter::RequiredArray));
parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray));
parameters.push_back(DataArraySelectionFilterParameter::New("Mask", "GoodVoxelsArrayPath", getGoodVoxelsArrayPath(), FilterParameter::RequiredArray));
parameters.push_back(SeparatorFilterParameter::New("Cell Ensemble Data", FilterParameter::RequiredArray));
parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray));
setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void AdaptiveAlignmentMutualInformation::setupFilterParameters()
{
// getting the current parameters that were set by the parent and adding to it before resetting it
FilterParameterVector parameters = getFilterParameters();
parameters.push_front(DoubleFilterParameter::New("Misorientation Tolerance", "MisorientationTolerance", getMisorientationTolerance(), FilterParameter::Parameter));
QStringList linkedProps("GoodVoxelsArrayPath");
parameters.push_back(LinkedBooleanFilterParameter::New("Use Mask Array", "UseGoodVoxels", getUseGoodVoxels(), linkedProps, FilterParameter::Parameter));
parameters.push_back(SeparatorFilterParameter::New("Cell Data", FilterParameter::RequiredArray));
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::Float, 4, DREAM3D::AttributeMatrixType::Cell, DREAM3D::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Quaternions", "QuatsArrayPath", getQuatsArrayPath(), FilterParameter::RequiredArray, req));
}
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::Int32, 1, DREAM3D::AttributeMatrixType::Cell, DREAM3D::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray, req));
}
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::Bool, 1, DREAM3D::AttributeMatrixType::Cell, DREAM3D::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Mask", "GoodVoxelsArrayPath", getGoodVoxelsArrayPath(), FilterParameter::RequiredArray, req));
}
parameters.push_back(SeparatorFilterParameter::New("Cell Ensemble Data", FilterParameter::RequiredArray));
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::UInt32, 1, DREAM3D::AttributeMatrixType::CellEnsemble, DREAM3D::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray, req));
}
setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void INLWriter::setupFilterParameters()
{
FilterParameterVector parameters;
parameters.push_back(OutputFileFilterParameter::New("Output File", "OutputFile", getOutputFile(), FilterParameter::Parameter, "*.txt", "INL Format"));
parameters.push_back(SeparatorFilterParameter::New("Cell Data", FilterParameter::RequiredArray));
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixType::Cell, SIMPL::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Feature Ids", "FeatureIdsArrayPath", getFeatureIdsArrayPath(), FilterParameter::RequiredArray, req));
}
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixType::Cell, SIMPL::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray, req));
}
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Float, 3, SIMPL::AttributeMatrixType::Cell, SIMPL::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Euler Angles", "CellEulerAnglesArrayPath", getCellEulerAnglesArrayPath(), FilterParameter::RequiredArray, req));
}
parameters.push_back(SeparatorFilterParameter::New("Cell Ensemble Data", FilterParameter::RequiredArray));
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::UInt32, 1, SIMPL::AttributeMatrixType::CellEnsemble, SIMPL::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray, req));
}
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::Defaults::AnyPrimitive, 1, SIMPL::AttributeMatrixType::CellEnsemble, SIMPL::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Material Names", "MaterialNameArrayPath", getMaterialNameArrayPath(), FilterParameter::RequiredArray, req));
}
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixType::CellEnsemble, SIMPL::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Number of Features", "NumFeaturesArrayPath", getNumFeaturesArrayPath(), FilterParameter::RequiredArray, req));
}
setFilterParameters(parameters);
}