Esempio n. 1
0
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void INLWriter::dataCheck()
{
  setErrorCondition(0);

  getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getFeatureIdsArrayPath().getDataContainerName());

  if (getOutputFile().isEmpty() == true)
  {
    QString ss = QObject::tr("The output file must be set");
    setErrorCondition(-1);
    notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
  }

  QFileInfo fi(getOutputFile());
  QDir parentPath = fi.path();
  if (parentPath.exists() == false)
  {
    QString ss = QObject::tr("The directory path for the output file does not exist. DREAM.3D will attempt to create this path during execution of the filter");
    notifyWarningMessage(getHumanLabel(), ss, -1);
  }

  QVector<DataArrayPath> cellDataArrayPaths;
  QVector<DataArrayPath> ensembleDataArrayPaths;

  QVector<size_t> cDims(1, 1);
  m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { cellDataArrayPaths.push_back(getFeatureIdsArrayPath()); }

  m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { cellDataArrayPaths.push_back(getCellPhasesArrayPath()); }

  m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this,  getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { ensembleDataArrayPaths.push_back(getCrystalStructuresArrayPath()); }

  m_NumFeaturesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this,  getNumFeaturesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_NumFeaturesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_NumFeatures = m_NumFeaturesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { ensembleDataArrayPaths.push_back(getNumFeaturesArrayPath()); }

  m_MaterialNamePtr = getDataContainerArray()->getPrereqArrayFromPath<StringDataArray, AbstractFilter>(this,  getMaterialNameArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if(getErrorCondition() >= 0) { ensembleDataArrayPaths.push_back(getMaterialNameArrayPath()); }

  cDims[0] = 3;
  m_CellEulerAnglesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getCellEulerAnglesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CellEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CellEulerAngles = m_CellEulerAnglesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { cellDataArrayPaths.push_back(getCellEulerAnglesArrayPath()); }

  getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, cellDataArrayPaths);
  getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, ensembleDataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateFaceSchuhMisorientationColoring::setupFilterParameters()
{
  FilterParameterVector parameters;

  {
    DataArraySelectionFilterParameter::RequirementType req;
    parameters.push_back(DataArraySelectionFilterParameter::New("SurfaceMeshFaceLabels", "SurfaceMeshFaceLabelsArrayPath", getSurfaceMeshFaceLabelsArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req;
    parameters.push_back(DataArraySelectionFilterParameter::New("AvgQuats", "AvgQuatsArrayPath", getAvgQuatsArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req;
    parameters.push_back(DataArraySelectionFilterParameter::New("FeaturePhases", "FeaturePhasesArrayPath", getFeaturePhasesArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req;
    parameters.push_back(DataArraySelectionFilterParameter::New("CrystalStructures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray, req));
  }

  parameters.push_back(StringFilterParameter::New("SurfaceMeshFaceSchuhMisorientationColors", "SurfaceMeshFaceSchuhMisorientationColorsArrayName", getSurfaceMeshFaceSchuhMisorientationColorsArrayName(), FilterParameter::CreatedArray));

  setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateMisorientationColors::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
  reader->openFilterGroup(this, index);
  setUseGoodVoxels(reader->readValue("UseGoodVoxels", getUseGoodVoxels() ) );
  setMisorientationColorArrayName(reader->readString("MisorientationColorArrayName", getMisorientationColorArrayName() ) );
  setGoodVoxelsArrayPath(reader->readDataArrayPath("GoodVoxelsArrayPath", getGoodVoxelsArrayPath() ) );
  setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
  setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
  setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
  setReferenceAxis( reader->readFloatVec3("ReferenceAxis", getReferenceAxis() ) );
  setReferenceAngle( reader->readValue("ReferenceAngle", getReferenceAngle() ) );
  reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void AlignSectionsMutualInformation::setupFilterParameters()
{
  // getting the current parameters that were set by the parent and adding to it before resetting it
  FilterParameterVector parameters = getFilterParameters();
  parameters.push_front(DoubleFilterParameter::New("Misorientation Tolerance", "MisorientationTolerance", getMisorientationTolerance(), FilterParameter::Parameter));
  QStringList linkedProps("GoodVoxelsArrayPath");
  parameters.push_back(LinkedBooleanFilterParameter::New("Use Mask Array", "UseGoodVoxels", getUseGoodVoxels(), linkedProps, FilterParameter::Parameter));
  parameters.push_back(SeparatorFilterParameter::New("Cell Data", FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Quaternions", "QuatsArrayPath", getQuatsArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Mask", "GoodVoxelsArrayPath", getGoodVoxelsArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(SeparatorFilterParameter::New("Cell Ensemble Data", FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray));
  setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void AlignSectionsMutualInformation::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
  AlignSections::readFilterParameters(reader, index);
  reader->openFilterGroup(this, index);
  setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
  setUseGoodVoxels(reader->readValue("UseGoodVoxels", getUseGoodVoxels() ) );
  setGoodVoxelsArrayPath(reader->readDataArrayPath("GoodVoxelsArrayPath", getGoodVoxelsArrayPath() ) );
  setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
  setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
  setMisorientationTolerance( reader->readValue("MisorientationTolerance", getMisorientationTolerance()) );
  reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void EBSDSegmentFeatures::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
  reader->openFilterGroup(this, index);
  setActiveArrayName(reader->readString("ActiveArrayName", getActiveArrayName() ) );
  setCellFeatureAttributeMatrixName(reader->readString("CellFeatureAttributeMatrixName", getCellFeatureAttributeMatrixName() ) );
  setFeatureIdsArrayName(reader->readString("FeatureIdsArrayName", getFeatureIdsArrayName() ) );
  setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
  setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
  setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
  setGoodVoxelsArrayPath(reader->readDataArrayPath("GoodVoxelsArrayPath", getGoodVoxelsArrayPath() ) );
  setUseGoodVoxels(reader->readValue("UseGoodVoxels", getUseGoodVoxels() ) );
  setMisorientationTolerance( reader->readValue("MisorientationTolerance", getMisorientationTolerance()) );
  reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void EBSDSegmentFeatures::setupFilterParameters()
{
  FilterParameterVector parameters;
  parameters.push_back(DoubleFilterParameter::New("Misorientation Tolerance (Degrees)", "MisorientationTolerance", getMisorientationTolerance(), FilterParameter::Parameter));
  QStringList linkedProps("GoodVoxelsArrayPath");
  parameters.push_back(LinkedBooleanFilterParameter::New("Use Mask Array", "UseGoodVoxels", getUseGoodVoxels(), linkedProps, FilterParameter::Parameter));
  parameters.push_back(SeparatorFilterParameter::New("Cell Data", FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Quaternions", "QuatsArrayPath", getQuatsArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Mask", "GoodVoxelsArrayPath", getGoodVoxelsArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(SeparatorFilterParameter::New("Cell Ensemble Data", FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(SeparatorFilterParameter::New("Cell Data", FilterParameter::CreatedArray));
  parameters.push_back(StringFilterParameter::New("Cell Feature Ids", "FeatureIdsArrayName", getFeatureIdsArrayName(), FilterParameter::CreatedArray));
  parameters.push_back(SeparatorFilterParameter::New("Cell Feature Data", FilterParameter::CreatedArray));
  parameters.push_back(StringFilterParameter::New("Cell Feature Attribute Matrix", "CellFeatureAttributeMatrixName", getCellFeatureAttributeMatrixName(), FilterParameter::CreatedArray));
  parameters.push_back(StringFilterParameter::New("Active", "ActiveArrayName", getActiveArrayName(), FilterParameter::CreatedArray));
  setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GroupMicroTextureRegions::dataCheck()
{
  setErrorCondition(0);
  DataArrayPath tempPath;

  GroupFeatures::dataCheck();
  if(getErrorCondition() < 0) { return; }

  DataContainer::Pointer m = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, m_FeatureIdsArrayPath.getDataContainerName(), false);
  if(getErrorCondition() < 0 || NULL == m) { return; }

  QVector<size_t> tDims(1, 0);
  m->createNonPrereqAttributeMatrix<AbstractFilter>(this, getNewCellFeatureAttributeMatrixName(), tDims, DREAM3D::AttributeMatrixType::CellFeature);

  QVector<DataArrayPath> dataArrayPaths;

  QVector<size_t> cDims(1, 1);
  // Cell Data
  m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  tempPath.update(m_FeatureIdsArrayPath.getDataContainerName(), m_FeatureIdsArrayPath.getAttributeMatrixName(), getCellParentIdsArrayName() );
  m_CellParentIdsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this, tempPath, -1, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CellParentIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CellParentIds = m_CellParentIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  // Feature Data
  m_FeaturePhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeaturePhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_FeaturePhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_FeaturePhases = m_FeaturePhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getFeaturePhasesArrayPath()); }

  tempPath.update(m_FeaturePhasesArrayPath.getDataContainerName(), m_FeaturePhasesArrayPath.getAttributeMatrixName(), getFeatureParentIdsArrayName() );
  m_FeatureParentIdsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this, tempPath, -1, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_FeatureParentIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_FeatureParentIds = m_FeatureParentIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  m_VolumesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getVolumesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_VolumesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_Volumes = m_VolumesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getVolumesArrayPath()); }

  cDims[0] = 4;
  m_AvgQuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getAvgQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_AvgQuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_AvgQuats = m_AvgQuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getVolumesArrayPath()); }

  // New Feature Data
  cDims[0] = 1;
  tempPath.update(m_FeatureIdsArrayPath.getDataContainerName(), getNewCellFeatureAttributeMatrixName(), getActiveArrayName() );
  m_ActivePtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<bool>, AbstractFilter, bool>(this, tempPath, true, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_ActivePtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_Active = m_ActivePtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  // Ensemble Data
  m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void BadDataNeighborOrientationCheck::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
  reader->openFilterGroup(this, index);
  setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
  setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
  setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
  setGoodVoxelsArrayPath(reader->readDataArrayPath("GoodVoxelsArrayPath", getGoodVoxelsArrayPath() ) );
  setMisorientationTolerance( reader->readValue("MisorientationTolerance", getMisorientationTolerance()) );
  setNumberOfNeighbors( reader->readValue("NumberOfNeighbors", getNumberOfNeighbors()) );
  reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GroupMicroTextureRegions::setupFilterParameters()
{
  FilterParameterVector parameters = getFilterParameters();

  parameters.push_front(BooleanFilterParameter::New("Group C-Axes With Running Average", "UseRunningAverage", getUseRunningAverage(), FilterParameter::Parameter));
  parameters.push_front(DoubleFilterParameter::New("C-Axis Alignment Tolerance (Degrees)", "CAxisTolerance", getCAxisTolerance(), FilterParameter::Parameter));

  {
    DataArraySelectionFilterParameter::RequirementType req;
    parameters.push_back(DataArraySelectionFilterParameter::New("Feature Ids", "FeatureIdsArrayPath", getFeatureIdsArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req;
    parameters.push_back(DataArraySelectionFilterParameter::New("Feature Phases", "FeaturePhasesArrayPath", getFeaturePhasesArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req;
    parameters.push_back(DataArraySelectionFilterParameter::New("Volumes", "VolumesArrayPath", getVolumesArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req;
    parameters.push_back(DataArraySelectionFilterParameter::New("Average Quaternions", "AvgQuatsArrayPath", getAvgQuatsArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req;
    parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray, req));
  }

  parameters.push_back(StringFilterParameter::New("New Cell Feature Attribute Matrix Name", "NewCellFeatureAttributeMatrixName", getNewCellFeatureAttributeMatrixName(), FilterParameter::CreatedArray));
  parameters.push_back(StringFilterParameter::New("Parent Ids", "CellParentIdsArrayName", getCellParentIdsArrayName(), FilterParameter::CreatedArray));
  parameters.push_back(StringFilterParameter::New("Feature Parent Ids", "FeatureParentIdsArrayName", getFeatureParentIdsArrayName(), FilterParameter::CreatedArray));
  parameters.push_back(StringFilterParameter::New("Active", "ActiveArrayName", getActiveArrayName(), FilterParameter::CreatedArray));

  setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GroupMicroTextureRegions::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
  GroupFeatures::readFilterParameters(reader, index);
  reader->openFilterGroup(this, index);
  setNewCellFeatureAttributeMatrixName(reader->readString("NewCellFeatureAttributeMatrixName", getNewCellFeatureAttributeMatrixName() ) );
  setActiveArrayName(reader->readString("ActiveArrayName", getActiveArrayName() ) );
  setFeatureParentIdsArrayName(reader->readString("FeatureParentIdsArrayName", getFeatureParentIdsArrayName() ) );
  setCellParentIdsArrayName(reader->readString("CellParentIdsArrayName", getCellParentIdsArrayName() ) );
  setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
  setAvgQuatsArrayPath(reader->readDataArrayPath("AvgQuatsArrayPath", getAvgQuatsArrayPath() ) );
  setVolumesArrayPath(reader->readDataArrayPath("VolumesArrayPath", getVolumesArrayPath() ) );
  setFeaturePhasesArrayPath(reader->readDataArrayPath("FeaturePhasesArrayPath", getFeaturePhasesArrayPath() ) );
  setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
  setCAxisTolerance( reader->readValue("CAxisTolerance", getCAxisTolerance()) );
  setUseRunningAverage( reader->readValue("UseRunningAverage", getUseRunningAverage()) );
  reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindAvgOrientations::setupFilterParameters()
{
    FilterParameterVector parameters;
    parameters.push_back(SeparatorFilterParameter::New("Element Data", FilterParameter::RequiredArray));
    parameters.push_back(DataArraySelectionFilterParameter::New("Feature Ids", "FeatureIdsArrayPath", getFeatureIdsArrayPath(), FilterParameter::RequiredArray));
    parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray));
    parameters.push_back(DataArraySelectionFilterParameter::New("Quaternions", "QuatsArrayPath", getQuatsArrayPath(), FilterParameter::RequiredArray));
    parameters.push_back(SeparatorFilterParameter::New("Ensemble Data", FilterParameter::RequiredArray));
    parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray));
    parameters.push_back(SeparatorFilterParameter::New("Feature Data", FilterParameter::CreatedArray));
    parameters.push_back(DataArrayCreationFilterParameter::New("Average Quaternions", "AvgQuatsArrayPath", getAvgQuatsArrayPath(), FilterParameter::CreatedArray));
    parameters.push_back(DataArrayCreationFilterParameter::New("Average Euler Angles", "AvgEulerAnglesArrayPath", getAvgEulerAnglesArrayPath(), FilterParameter::CreatedArray));
    setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateFaceSchuhMisorientationColoring::dataCheckVoxel()
{
  DataArrayPath tempPath;
  setErrorCondition(0);

  QVector<size_t> dims(1, 4);
  m_AvgQuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getAvgQuatsArrayPath(), dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_AvgQuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_AvgQuats = m_AvgQuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  dims[0] = 1;
  m_FeaturePhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeaturePhasesArrayPath(), dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_FeaturePhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_FeaturePhases = m_FeaturePhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
//typedef DataArray<unsigned int> XTalStructArrayType;
  m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<unsigned int>, AbstractFilter>(this, getCrystalStructuresArrayPath(), dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateFaceSchuhMisorientationColoring::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
  reader->openFilterGroup(this, index);
  setSurfaceMeshFaceSchuhMisorientationColorsArrayName(reader->readString("SurfaceMeshFaceSchuhMisorientationColorsArrayName", getSurfaceMeshFaceSchuhMisorientationColorsArrayName() ) );
  setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
  setFeaturePhasesArrayPath(reader->readDataArrayPath("FeaturePhasesArrayPath", getFeaturePhasesArrayPath() ) );
  setAvgQuatsArrayPath(reader->readDataArrayPath("AvgQuatsArrayPath", getAvgQuatsArrayPath() ) );
  setSurfaceMeshFaceLabelsArrayPath(reader->readDataArrayPath("SurfaceMeshFaceLabelsArrayPath", getSurfaceMeshFaceLabelsArrayPath() ) );
  reader->closeFilterGroup();
}
Esempio n. 15
0
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void VisualizeGBCDGMT::setupFilterParameters()
{
  FilterParameterVector parameters;
  parameters.push_back(IntFilterParameter::New("Phase of Interest", "PhaseOfInterest", getPhaseOfInterest(), FilterParameter::Parameter));
  parameters.push_back(AxisAngleFilterParameter::New("Misorientation Axis-Angle", "MisorientationRotation", getMisorientationRotation(), FilterParameter::Parameter));
  parameters.push_back(OutputFileFilterParameter::New("Output GMT File", "OutputFile", getOutputFile(), FilterParameter::Parameter, "*.dat", "DAT File"));
  parameters.push_back(SeparatorFilterParameter::New("Face Ensemble Data", FilterParameter::RequiredArray));
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::Double, DREAM3D::Defaults::AnyComponentSize, DREAM3D::AttributeMatrixType::FaceEnsemble, DREAM3D::GeometryType::TriangleGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("GBCD", "GBCDArrayPath", getGBCDArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req;
    parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray, req));
  }
  setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void BadDataNeighborOrientationCheck::dataCheck()
{
  setErrorCondition(0);

  QVector<DataArrayPath> dataArrayPaths;

  getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getGoodVoxelsArrayPath().getDataContainerName());

  QVector<size_t> cDims(1, 1);
  m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_GoodVoxelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getGoodVoxelsArrayPath()); }

  m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }

  m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<unsigned int>, AbstractFilter>(this,  getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  cDims[0] = 4;
  m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }

  getDataContainerArray()->validateNumberOfTuples(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void AdaptiveAlignmentMutualInformation::setupFilterParameters()
{
	// getting the current parameters that were set by the parent and adding to it before resetting it
	FilterParameterVector parameters = getFilterParameters();
	parameters.push_front(DoubleFilterParameter::New("Misorientation Tolerance", "MisorientationTolerance", getMisorientationTolerance(), FilterParameter::Parameter));
	QStringList linkedProps("GoodVoxelsArrayPath");
	parameters.push_back(LinkedBooleanFilterParameter::New("Use Mask Array", "UseGoodVoxels", getUseGoodVoxels(), linkedProps, FilterParameter::Parameter));
	parameters.push_back(SeparatorFilterParameter::New("Cell Data", FilterParameter::RequiredArray));
	{
		DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::Float, 4, DREAM3D::AttributeMatrixType::Cell, DREAM3D::GeometryType::ImageGeometry);
		parameters.push_back(DataArraySelectionFilterParameter::New("Quaternions", "QuatsArrayPath", getQuatsArrayPath(), FilterParameter::RequiredArray, req));
	}
  {
	  DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::Int32, 1, DREAM3D::AttributeMatrixType::Cell, DREAM3D::GeometryType::ImageGeometry);
	  parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
	  DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::Bool, 1, DREAM3D::AttributeMatrixType::Cell, DREAM3D::GeometryType::ImageGeometry);
	  parameters.push_back(DataArraySelectionFilterParameter::New("Mask", "GoodVoxelsArrayPath", getGoodVoxelsArrayPath(), FilterParameter::RequiredArray, req));
  }
  parameters.push_back(SeparatorFilterParameter::New("Cell Ensemble Data", FilterParameter::RequiredArray));
  {
	  DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::UInt32, 1, DREAM3D::AttributeMatrixType::CellEnsemble, DREAM3D::GeometryType::ImageGeometry);

	  parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray, req));
  }
  setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void BadDataNeighborOrientationCheck::setupFilterParameters()
{
  FilterParameterVector parameters;
  parameters.push_back(DoubleFilterParameter::New("Misorientation Tolerance (Degrees)", "MisorientationTolerance", getMisorientationTolerance(), FilterParameter::Parameter));
  parameters.push_back(IntFilterParameter::New("Required Number of Neighbors", "NumberOfNeighbors", getNumberOfNeighbors(), FilterParameter::Parameter));
  parameters.push_back(SeparatorFilterParameter::New("Cell Data", FilterParameter::RequiredArray));
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::Float, 4, DREAM3D::AttributeMatrixType::Cell, DREAM3D::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Quaternions", "QuatsArrayPath", getQuatsArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::Bool, 1, DREAM3D::AttributeMatrixType::Cell, DREAM3D::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Mask", "GoodVoxelsArrayPath", getGoodVoxelsArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::Int32, 1, DREAM3D::AttributeMatrixType::Cell, DREAM3D::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray, req));
  }
  parameters.push_back(SeparatorFilterParameter::New("Cell Ensemble Data", FilterParameter::RequiredArray));
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::UInt32, 1, DREAM3D::AttributeMatrixType::CellEnsemble, DREAM3D::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray, req));
  }
  setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void EBSDSegmentFeatures::dataCheck()
{
  setErrorCondition(0);
  DataArrayPath tempPath;

  SegmentFeatures::dataCheck();
  if(getErrorCondition() < 0) { return; }

  // Set the DataContainerName for the Parent Class (SegmentFeatures) to Use
  setDataContainerName(m_QuatsArrayPath.getDataContainerName());

  DataContainer::Pointer m = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, getDataContainerName(), false);
  if(getErrorCondition() < 0 || NULL == m.get()) { return; }

  QVector<size_t> tDims(1, 0);
  m->createNonPrereqAttributeMatrix<AbstractFilter>(this, getCellFeatureAttributeMatrixName(), tDims, DREAM3D::AttributeMatrixType::CellFeature);

  QVector<DataArrayPath> dataArrayPaths;

  QVector<size_t> cDims(1, 1);
  if(m_UseGoodVoxels == true)
  {
    m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
    if( NULL != m_GoodVoxelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
    { m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
    if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getGoodVoxelsArrayPath()); }
  }

  m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }

  tempPath.update(getDataContainerName(), m_QuatsArrayPath.getAttributeMatrixName(), getFeatureIdsArrayName() );
  m_FeatureIdsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this,  tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  tempPath.update(getDataContainerName(), getCellFeatureAttributeMatrixName(), getActiveArrayName() );
  m_ActivePtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<bool>, AbstractFilter, bool>(this,  tempPath, true, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_ActivePtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_Active = m_ActivePtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this,  getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  cDims[0] = 4;
  m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }

  getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindAvgOrientations::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
  reader->openFilterGroup(this, index);
  setAvgEulerAnglesArrayPath(reader->readDataArrayPath("AvgEulerAnglesArrayPath", getAvgEulerAnglesArrayPath() ) );
  setAvgQuatsArrayPath(reader->readDataArrayPath("AvgQuatsArrayPath", getAvgQuatsArrayPath() ) );
  setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
  setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
  setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
  setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
  reader->closeFilterGroup();
}
Esempio n. 21
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// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void INLWriter::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
  reader->openFilterGroup(this, index);
  setCellEulerAnglesArrayPath(reader->readDataArrayPath("CellEulerAnglesArrayPath", getCellEulerAnglesArrayPath() ) );
  setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
  setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
  setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
  setNumFeaturesArrayPath(reader->readDataArrayPath("NumFeaturesArrayPath", getNumFeaturesArrayPath() ) );
  setMaterialNameArrayPath(reader->readDataArrayPath("MaterialNameArrayPath", getMaterialNameArrayPath()));
  setOutputFile( reader->readString( "OutputFile", getOutputFile() ) );
  reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindAvgOrientations::dataCheck()
{
  setErrorCondition(0);

  QVector<DataArrayPath> dataArrayPaths;

  QVector<size_t> cDims(1, 1);
  m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getFeatureIdsArrayPath()); }

  m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }

  cDims[0] = 4;
  m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }

  m_AvgQuatsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, getAvgQuatsArrayPath(), 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_AvgQuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_AvgQuats = m_AvgQuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  cDims[0] = 3;
  m_FeatureEulerAnglesPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, getAvgEulerAnglesArrayPath(), 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_FeatureEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_FeatureEulerAngles = m_FeatureEulerAnglesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  cDims[0] = 1;
  m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
Esempio n. 23
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// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void INLWriter::setupFilterParameters()
{
  FilterParameterVector parameters;
  parameters.push_back(OutputFileFilterParameter::New("Output File", "OutputFile", getOutputFile(), FilterParameter::Parameter, "*.txt", "INL Format"));
  parameters.push_back(SeparatorFilterParameter::New("Cell Data", FilterParameter::RequiredArray));
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixType::Cell, SIMPL::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Feature Ids", "FeatureIdsArrayPath", getFeatureIdsArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixType::Cell, SIMPL::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Float, 3, SIMPL::AttributeMatrixType::Cell, SIMPL::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Euler Angles", "CellEulerAnglesArrayPath", getCellEulerAnglesArrayPath(), FilterParameter::RequiredArray, req));
  }
  parameters.push_back(SeparatorFilterParameter::New("Cell Ensemble Data", FilterParameter::RequiredArray));
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::UInt32, 1, SIMPL::AttributeMatrixType::CellEnsemble, SIMPL::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::Defaults::AnyPrimitive, 1, SIMPL::AttributeMatrixType::CellEnsemble, SIMPL::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Material Names", "MaterialNameArrayPath", getMaterialNameArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixType::CellEnsemble, SIMPL::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Number of Features", "NumFeaturesArrayPath", getNumFeaturesArrayPath(), FilterParameter::RequiredArray, req));
  }
  setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindAvgOrientations::setupFilterParameters()
{
  FilterParameterVector parameters;
  parameters.push_back(SeparatorFilterParameter::New("Element Data", FilterParameter::RequiredArray));
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateCategoryRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixObjectType::Element);
    parameters.push_back(DataArraySelectionFilterParameter::New("Feature Ids", "FeatureIdsArrayPath", getFeatureIdsArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateCategoryRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixObjectType::Element);
    parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateCategoryRequirement(SIMPL::TypeNames::Float, 4, SIMPL::AttributeMatrixObjectType::Element);
    parameters.push_back(DataArraySelectionFilterParameter::New("Quaternions", "QuatsArrayPath", getQuatsArrayPath(), FilterParameter::RequiredArray, req));
  }
  parameters.push_back(SeparatorFilterParameter::New("Ensemble Data", FilterParameter::RequiredArray));
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateCategoryRequirement(SIMPL::TypeNames::UInt32, 1, SIMPL::AttributeMatrixObjectType::Ensemble);
    parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray, req));
  }
  parameters.push_back(SeparatorFilterParameter::New("Feature Data", FilterParameter::CreatedArray));

  {
    DataArrayCreationFilterParameter::RequirementType req = DataArrayCreationFilterParameter::CreateRequirement(SIMPL::AttributeMatrixObjectType::Feature);
    parameters.push_back(DataArrayCreationFilterParameter::New("Average Quaternions", "AvgQuatsArrayPath", getAvgQuatsArrayPath(), FilterParameter::CreatedArray, req));
  }
  {
    DataArrayCreationFilterParameter::RequirementType req = DataArrayCreationFilterParameter::CreateRequirement(SIMPL::AttributeMatrixObjectType::Feature);
    parameters.push_back(DataArrayCreationFilterParameter::New("Average Euler Angles", "AvgEulerAnglesArrayPath", getAvgEulerAnglesArrayPath(), FilterParameter::CreatedArray, req));
  }
  setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void AlignSectionsMutualInformation::dataCheck()
{
  setErrorCondition(0);

  AlignSections::dataCheck();
  if(getErrorCondition() < 0) { return; }

  INIT_DataArray(m_FeatureCounts, int32_t);

  // Set the DataContainerName and AttributematrixName for the Parent Class (AlignSections) to Use.
  setDataContainerName(m_QuatsArrayPath.getDataContainerName());
  setCellAttributeMatrixName(m_QuatsArrayPath.getAttributeMatrixName());

  QVector<DataArrayPath> dataArrayPaths;

  QVector<size_t> cDims(1, 4);
  m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }

  cDims[0] = 1;
  m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray< int32_t>, AbstractFilter>(this,  getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
  if(m_UseGoodVoxels == true)
  {
    m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
    if( NULL != m_GoodVoxelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
    { m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
    if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getGoodVoxelsArrayPath()); }
  }

  m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<unsigned int>, AbstractFilter>(this,  getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
Esempio n. 26
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// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void VisualizeGBCDGMT::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
  reader->openFilterGroup(this, index);
  setGBCDArrayPath(reader->readDataArrayPath("GBCDArrayPath", getGBCDArrayPath()));
  setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath()));
  setOutputFile(reader->readString("OutputFile", getOutputFile()));
  setMisorientationRotation(reader->readAxisAngle("MisorientationRotation", getMisorientationRotation(), -1) );
  setPhaseOfInterest(reader->readValue("PhaseOfInterest", getPhaseOfInterest()));
  reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateMisorientationColors::setupFilterParameters()
{
  FilterParameterVector parameters;
  parameters.push_back(FloatVec3FilterParameter::New("Reference Orientation Axis", "ReferenceAxis", getReferenceAxis(), FilterParameter::Parameter));
  parameters.push_back(DoubleFilterParameter::New("Reference Orientation Angle (Degrees)", "ReferenceAngle", getReferenceAngle(), FilterParameter::Parameter));
  QStringList linkedProps("GoodVoxelsArrayPath");
  parameters.push_back(LinkedBooleanFilterParameter::New("Apply to Good Elements Only (Bad Elements Will Be Black)", "UseGoodVoxels", getUseGoodVoxels(), linkedProps, FilterParameter::Parameter));
  parameters.push_back(SeparatorFilterParameter::New("Element Data", FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Quaternions", "QuatsArrayPath", getQuatsArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "CellPhasesArrayPath", getCellPhasesArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Mask", "GoodVoxelsArrayPath", getGoodVoxelsArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(SeparatorFilterParameter::New("Ensemble Data", FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Crystal Structures", "CrystalStructuresArrayPath", getCrystalStructuresArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(SeparatorFilterParameter::New("Element Data", FilterParameter::CreatedArray));
  parameters.push_back(StringFilterParameter::New("Misorientation Colors", "MisorientationColorArrayName", getMisorientationColorArrayName(), FilterParameter::CreatedArray));
  setFilterParameters(parameters);
}
Esempio n. 28
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// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void VisualizeGBCDGMT::dataCheck()
{
  setErrorCondition(0);

  getDataContainerArray()->getPrereqGeometryFromDataContainer<TriangleGeom, AbstractFilter>(this, getGBCDArrayPath().getDataContainerName());

  if (getOutputFile().isEmpty() == true)
  {
    QString ss = QObject::tr( "The output file must be set");
    setErrorCondition(-1000);
    notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
  }

  QFileInfo fi(getOutputFile());
  QDir parentPath = fi.path();
  if (parentPath.exists() == false && getInPreflight())
  {
    QString ss = QObject::tr( "The directory path for the output file does not exist. DREAM.3D will attempt to create this path during execution of the filter");
    notifyWarningMessage(getHumanLabel(), ss, -1);
  }

  if (fi.suffix().compare("") == 0)
  {
    setOutputFile(getOutputFile().append(".dat"));
  }

  // Make sure the file name ends with _1 so the GMT scripts work correctly
  QString fName = fi.baseName();
  if (fName.endsWith("_1") == false)
  {
    fName = fName + "_1";
    QString absPath = fi.absolutePath() + "/" + fName + ".dat";
    setOutputFile(absPath);
  }

  QVector<size_t> cDims(1, 1);
  m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<unsigned int>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if (NULL != m_CrystalStructuresPtr.lock().get()) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  {
    m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0);
  } /* Now assign the raw pointer to data from the DataArray<T> object */

  IDataArray::Pointer tmpGBCDPtr = getDataContainerArray()->getPrereqIDataArrayFromPath<IDataArray, AbstractFilter>(this, getGBCDArrayPath());
  if(getErrorCondition() < 0) { return; }

  if (NULL != tmpGBCDPtr.get())
  {
    QVector<size_t> cDims = tmpGBCDPtr->getComponentDimensions();
    m_GBCDPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<double>, AbstractFilter>(this, getGBCDArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
    if( NULL != m_GBCDPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
    { m_GBCD = m_GBCDPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  }

  if (NULL != m_GBCDPtr.lock().get() && getPhaseOfInterest() >= m_GBCDPtr.lock()->getNumberOfTuples())
  {
    QString ss = QObject::tr("The phase index is larger than the number of Ensembles").arg(ClassName());
    setErrorCondition(-1);
    notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
  }

}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateMisorientationColors::dataCheck()
{
  setErrorCondition(0);
  DataArrayPath tempPath;

  QVector<DataArrayPath> dataArrayPaths;

  QVector<size_t> cDims(1, 1);
  m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }

  cDims[0] = 4;
  m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }

  cDims[0] = 1;
  m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  cDims[0] = 3;
  tempPath.update(getCellPhasesArrayPath().getDataContainerName(), getCellPhasesArrayPath().getAttributeMatrixName(), getMisorientationColorArrayName() );
  m_MisorientationColorPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<uint8_t>, AbstractFilter, uint8_t>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_MisorientationColorPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_MisorientationColor = m_MisorientationColorPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  // The good voxels array is optional, If it is available we are going to use it, otherwise we are going to create it
  cDims[0] = 1;
  if (getUseGoodVoxels() == true)
  {
    // The good voxels array is optional, If it is available we are going to use it, otherwise we are going to create it
    cDims[0] = 1;
    m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
    if( NULL != m_GoodVoxelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
    { m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
    if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getGoodVoxelsArrayPath()); }
  }
  else
  {
    m_GoodVoxels = NULL;
  }

  getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateFaceMisorientationColoring::dataCheckVoxel()
{
  setErrorCondition(0);

  QVector<DataArrayPath> dataArrayPaths;

  getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getAvgQuatsArrayPath().getDataContainerName());

  QVector<size_t> cDims(1, 4);
  m_AvgQuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getAvgQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_AvgQuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_AvgQuats = m_AvgQuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getAvgQuatsArrayPath()); }

  cDims[0] = 1;
  m_FeaturePhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeaturePhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_FeaturePhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_FeaturePhases = m_FeaturePhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
  if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getFeaturePhasesArrayPath()); }

  m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<unsigned int>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
  if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
  { m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */

  getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}