Esempi in C++ (Cpp) per get_meta_info

Esempio n. 1

File: vdb_info.c Progetto: ncbi/sra-tools

static rc_t vdb_info_db( vdb_info_data * data, VSchema * schema, const VDBManager *mgr )
{
    const VDatabase * db;
    rc_t rc = VDBManagerOpenDBRead( mgr, &db, schema, "%s", data->acc );
    if ( rc == 0 )
    {
        const VTable * tab;
        const KMetadata * meta = NULL;

        rc_t rc1 = VDatabaseOpenTableRead( db, &tab, "SEQUENCE" );
        if ( rc1 == 0 )
        {
            data->s_platform = get_platform( tab );
            data->seq_rows = get_rowcount( tab );
            VTableRelease( tab );
        }

        data->ref_rows          = get_tab_row_count( db, "REFERENCE" );
        data->prim_rows         = get_tab_row_count( db, "PRIMARY_ALIGNMENT" );
        data->sec_rows          = get_tab_row_count( db, "SECONDARY_ALIGNMENT" );
        data->ev_rows           = get_tab_row_count( db, "EVIDENCE_ALIGNMENT" );
        data->ev_int_rows       = get_tab_row_count( db, "EVIDENCE_INTERVAL" );
        data->consensus_rows    = get_tab_row_count( db, "CONSENSUS" );
        data->passes_rows       = get_tab_row_count( db, "PASSES" );
        data->metrics_rows      = get_tab_row_count( db, "ZMW_METRICS" );

        if ( data->ref_rows > 0 )
            get_species( data->species, sizeof data->species, db, mgr );
        
        rc = VDatabaseOpenMetadataRead ( db, &meta );
        if ( rc == 0 )
        {
            get_meta_info( data, meta );
            KMetadataRelease ( meta );
        }

        VDatabaseRelease( db );
    }
    return rc;

}

Esempio n. 2

File: vdb_info.c Progetto: genome-vendor/sra-sdk

static rc_t vdb_info_tab( vdb_info_data * data, VSchema * schema, const VDBManager *mgr )
{
    const VTable * tab;
    rc_t rc = VDBManagerOpenTableRead( mgr, &tab, schema, "%s", data->acc );
    if ( rc == 0 )
    {
        const KMetadata * meta = NULL;

        data->s_platform = get_platform( tab );
        data->seq_rows = get_rowcount( tab );

        rc = VTableOpenMetadataRead ( tab, &meta );
        if ( rc == 0 )
        {
            get_meta_info( data, meta );
            KMetadataRelease ( meta );
        }

        VTableRelease( tab );
    }
    return rc;
}