Esempi in C++ (Cpp) per gt_outputtranslationandorf

Esempio n. 1

File: txt_pgl_visitor.c Progetto: AlexWoroschilow/uni_hamburg

static void show_ags(const GthAGS *ags, GtUword pglnum,
                     GtUword agsnum, GtUword translationtable,
                     GthInput *input, unsigned int indentlevel, GthOutput *out)
{
  GtFile *outfp = out->outfp;

  /* output AGS line */
  outputAGSline(ags, agsnum, out->outfp);

  /* output SCR line */
  outputSCRline(ags, out->outfp);

  /* output exon/intron lines */
  output_exon_intron_lines(ags, out->widthforgenpos, out->outfp);

  /* output PGS lines */
  outputPGSlines(ags->alignments, out->outfp);

  /* output 3-phase translation */
  gt_outputtranslationandorf(pglnum, ags, agsnum, translationtable, input,
                             indentlevel, out);

  /* output three final newlines */
  gt_file_xprintf(outfp, "\n\n\n");
}

Esempio n. 2

File: xml_pgl_visitor.c Progetto: 9beckert/TIR

static void xml_show_ags(const GthAGS *ags, unsigned long pglnum,
                         unsigned long agsnum, unsigned long translationtable,
                         GthInput *input, unsigned int indentlevel,
                         GthOutput *out)
{
  gth_indent(out->outfp, indentlevel);
  gt_file_xprintf(out->outfp, "<AGS_information>\n");
  indentlevel++;

  /* output AGS line */
  xml_outputAGSline(ags, agsnum, indentlevel, out->outfp);

  /* output SCR line */
  xml_outputSCRline(ags, indentlevel, out->outfp);

  /* output exon/intron lines */
  xml_output_exon_intron_lines(ags, indentlevel, out->outfp);

  /* output PGS lines */
  xml_outputPGSlines(ags->alignments, indentlevel, out->outfp);

  /* output 3-phase translation */
  gt_outputtranslationandorf(pglnum, ags, agsnum, translationtable, input,
                          indentlevel, out);

  indentlevel--;
  gth_indent(out->outfp, indentlevel);
  gt_file_xprintf(out->outfp, "</AGS_information>\n");
}