void parseSeqs(string filename, SeqSet &data) {
ifstream input;
SeqStream input_stream(openSeqFile(filename, input));
if(!input_stream.good()) {
throw("File stream is in a bad state");
}
string format = guessFormat(input_stream);
if(format == "fasta") {
try {
parseFasta(input_stream, filename, data);
} catch(...) {
input.close();
throw;
}
} else if(format == "fastq") {
try {
parseFastq(input_stream, filename, data);
} catch(...) {
input.close();
throw;
}
} else {
input.close();
throw("Unrecognized format");
}
input.close();
}
void CEPasteDialog::refresh()
{
switch (guessFormat(m_text)) {
case InvalidFormat:
default:
refreshInvalidFormat();
break;
case VaspFormat:
refreshVaspFormat();
break;
}
}
void CEPasteDialog::accept()
{
switch (guessFormat(m_text)) {
case InvalidFormat:
default:
break;
case VaspFormat:
if (!acceptVaspFormat()) {
return;
}
break;
}
QDialog::accept();
}
string guessFormat(SeqStream s) {
string format = "";
return guessFormat(s, format);
}