/*
* Class: hdf_hdf5lib_H5
* Method: H5Ovisit
* Signature: (JIILjava/lang/Object;Ljava/lang/Object;)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Ovisit
(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order,
jobject callback_op, jobject op_data)
{
herr_t status = -1;
ENVPTR->GetJavaVM(ENVPAR &jvm);
visit_callback = callback_op;
if (op_data == NULL) {
h5nullArgument(env, "H5Ovisit: op_data is NULL");
} /* end if */
else if (callback_op == NULL) {
h5nullArgument(env, "H5Ovisit: callback_op is NULL");
} /* end if */
else {
status = H5Ovisit((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)op_data);
if (status < 0)
h5libraryError(env);
}
return status;
} /* end Java_hdf_hdf5lib_H5_H5Ovisit */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Ovisit_by_name
* Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name
(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order,
jobject callback_op, jobject op_data, jlong access_id)
{
herr_t status = -1;
const char *lName;
ENVPTR->GetJavaVM(ENVPAR &jvm);
visit_callback = callback_op;
if (op_data == NULL) {
h5nullArgument(env, "H5Ovisit_by_name: op_data is NULL");
return -1;
} /* end if */
else if (callback_op == NULL) {
h5nullArgument(env, "H5Ovisit_by_name: callback_op is NULL");
return -1;
} /* end if */
else {
PIN_JAVA_STRING(name, lName);
if (lName != NULL) {
status = H5Ovisit_by_name((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)op_data, (hid_t)access_id);
UNPIN_JAVA_STRING(name, lName);
if (status < 0)
h5libraryError(env);
}
}
return status;
} /* end Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name */
/*
* Class: hdf_hdf5lib_H5
* Method: H5get_libversion
* Signature: ([I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5get_1libversion
(JNIEnv *env, jclass clss, jintArray libversion)
{
unsigned *theArray = NULL;
herr_t status = -1;
jboolean isCopy;
if (libversion == NULL) {
h5nullArgument(env, "H5get_version: libversion is NULL");
} /* end if */
else {
theArray = (unsigned*)ENVPTR->GetIntArrayElements(ENVPAR libversion, &isCopy);
if (theArray == NULL) {
h5JNIFatalError( env, "H5get_libversion: input not pinned");
} /* end if */
else {
status = H5get_libversion(&(theArray[0]), &(theArray[1]), &(theArray[2]));
if (status < 0) {
ENVPTR->ReleaseIntArrayElements(ENVPAR libversion, (jint*)theArray, JNI_ABORT);
h5libraryError(env);
} /* end if */
ENVPTR->ReleaseIntArrayElements(ENVPAR libversion, (jint*)theArray,0);
} /* end else */
} /* end else */
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5get_1libversion */
/*
* Class: hdf_hdf5lib_H5
* Method: _H5Rdereference
* Signature: (JJI[B)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Rdereference(JNIEnv *env, jclass clss, jlong dataset, jlong access_list, jint ref_type, jbyteArray ref)
{
jboolean isCopy;
jbyte *refP;
hid_t retVal = -1;
if (ref == NULL) {
h5nullArgument( env, "H5Rdereference: ref is NULL");
} /* end if */
else if ((ref_type == H5R_OBJECT) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_OBJ_REF_BUF_SIZE) {
h5badArgument( env, "H5Rdereference: obj ref input array != H5R_OBJ_REF_BUF_SIZE");
} /* end else if */
else if ((ref_type == H5R_DATASET_REGION) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
h5badArgument( env, "H5Rdereference: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
} /* end else if */
else {
refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
if (refP == NULL) {
h5JNIFatalError(env, "H5Rderefernce: ref not pinned");
} /* end if */
else {
retVal = H5Rdereference2((hid_t)dataset, (hid_t)access_list, (H5R_type_t)ref_type, refP);
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
if (retVal < 0)
h5libraryError(env);
} /* end else */
} /* end else */
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Rdereference */
/*
* Class: hdf_hdf5lib_H5
* Method: H5G_obj_t H5Rget_obj_type
* Signature: (JI[B)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1obj_1type(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref)
{
int retVal =-1;
jboolean isCopy;
jbyte *refP;
H5O_type_t object_info;
if (ref == NULL) {
h5nullArgument( env, "H5Rget_object_type: ref is NULL");
} /* end if */
else {
refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
if (refP == NULL) {
h5JNIFatalError(env, "H5Rget_object_type: ref not pinned");
} /* end if */
else {
retVal = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refP, &object_info);
if(retVal >= 0)
retVal = object_info;
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
if (retVal < 0)
h5libraryError(env);
} /* end else */
} /* end else */
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1type */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Literate_by_name
* Signature: (JLjava/lang/String;IIJLjava/lang/Object;Ljava/lang/Object;J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Literate_1by_1name
(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order,
jlong idx, jobject callback_op, jobject op_data, jlong access_id)
{
hsize_t start_idx = (hsize_t)idx;
herr_t status = -1;
const char *lName;
ENVPTR->GetJavaVM(ENVPAR &jvm);
cb_wrapper wrapper = {callback_op, op_data};
if ((op_data == NULL) || (callback_op == NULL)) {
h5nullArgument(env, "H5Literate_by_name: op_data or callback_op is NULL");
} /* end if */
else {
PIN_JAVA_STRING(name, lName);
if (lName != NULL) {
status = H5Literate_by_name((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper, (hid_t)access_id);
UNPIN_JAVA_STRING(name, lName);
if (status < 0)
h5libraryError(env);
}
} /* end else */
return status;
} /* end Java_hdf_hdf5lib_H5_H5Literate_1by_1name */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Aread
* Signature: (JJ[B)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jbyteArray buf)
{
herr_t status = -1;
jbyte *byteP;
jboolean isCopy;
if (buf == NULL) {
h5nullArgument( env,"H5Aread: buf is NULL");
} /* end if */
else {
byteP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy);
if (byteP == NULL) {
h5JNIFatalError( env,"H5Aread: buf is not pinned");
} /* end if */
else {
status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, byteP);
if (status < 0) {
ENVPTR->ReleaseByteArrayElements(ENVPAR buf, byteP, JNI_ABORT);
h5libraryError(env);
} /* end if */
else {
ENVPTR->ReleaseByteArrayElements(ENVPAR buf, byteP, 0);
} /* end else */
} /* end else */
} /* end else */
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread */
/*
* Class: hdf_hdf5lib_H5
* Method: int H5Rget_obj_type2
* Signature: (JI[B[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref, jintArray ref_obj)
{
jint status;
jboolean isCopy;
jbyte *refP;
jint *ref_objP;
int retVal = -1;
if (ref == NULL) {
h5nullArgument( env, "H5Rget_object_type: ref is NULL");
} /* end if */
else if (ref_obj == NULL) {
h5nullArgument( env, "H5Rget_object_type: ref_obj is NULL");
} /* end else if */
else {
refP = (jbyte *)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
if (refP == NULL) {
h5JNIFatalError(env, "H5Rget_object_type: ref not pinned");
} /* end if */
else {
ref_objP = (jint *)ENVPTR->GetIntArrayElements(ENVPAR ref_obj, &isCopy);
if (ref_objP == NULL) {
ENVPTR->ReleaseByteArrayElements(ENVPAR ref,refP,0);
h5JNIFatalError(env, "H5Rget_object_type: ref_obj not pinned");
} /* end if */
else {
status = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refP, (H5O_type_t*)ref_objP);
retVal = ref_objP[0];
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
if (status < 0) {
ENVPTR->ReleaseIntArrayElements(ENVPAR ref_obj,ref_objP, JNI_ABORT);
h5libraryError(env);
} /* end if */
else {
ENVPTR->ReleaseIntArrayElements(ENVPAR ref_obj, ref_objP, 0);
} /* end else */
} /* end else */
} /* end else */
} /* end else */
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2 */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Eget_msg
* Signature: (J[I)Ljava/lang/String;
*/
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Eget_1msg
(JNIEnv *env, jclass cls, jlong msg_id, jintArray error_msg_type_list)
{
char *namePtr;
jstring str = NULL;
jboolean isCopy;
ssize_t buf_size;
jint *theArray;
H5E_type_t error_msg_type;
if (msg_id < 0) {
h5badArgument(env, "H5Eget_msg: invalid argument");
} /* end if */
else if (error_msg_type_list == NULL) {
h5nullArgument(env, "H5Eget_msg: error_msg_type_list is NULL");
} /* end if */
else {
/* get the length of the name */
buf_size = H5Eget_msg((hid_t)msg_id, NULL, NULL, 0);
if ((buf_size < 0) || (buf_size == 0)) {
h5JNIFatalError(env, "H5Eget_msg: Invalid message");
} /* end if */
else {
buf_size++; /* add extra space for the null terminator */
namePtr = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
if (namePtr == NULL) {
h5outOfMemory(env, "H5Eget_msg: malloc failed");
} /* end if */
else {
theArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR error_msg_type_list, &isCopy);
if (theArray == NULL) {
HDfree(namePtr);
h5JNIFatalError(env, "H5Eget_msg: error_msg_type_list not pinned");
} /* end if */
else {
buf_size = H5Eget_msg((hid_t)msg_id, &error_msg_type, (char *)namePtr, (size_t)buf_size);
if (buf_size < 0) {
HDfree(namePtr);
ENVPTR->ReleaseIntArrayElements(ENVPAR error_msg_type_list, theArray, JNI_ABORT);
h5libraryError(env);
} /* end if */
else {
theArray[0] = error_msg_type;
ENVPTR->ReleaseIntArrayElements(ENVPAR error_msg_type_list, theArray, 0);
str = ENVPTR->NewStringUTF(ENVPAR namePtr);
HDfree(namePtr);
} /* end else */
} /* end else */
} /* end else */
} /* end else */
} /* end else */
return str;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1msg */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Rget_name
* Signature: (JI[B[Ljava/lang/String;J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1name(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref, jobjectArray name, jlong size)
{
jlong ret_val = -1;
jbyte *refP;
jboolean isCopy;
char *aName = NULL;
jstring str;
size_t bs;
bs = (size_t)size;
if (bs <= 0) {
h5badArgument(env, "H5Rget_name: size <= 0");
} /* end if */
else if (ref == NULL) {
h5nullArgument(env, "H5Rget_name: ref is NULL");
} /* end else if */
else {
if ((ref_type == H5R_OBJECT) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_OBJ_REF_BUF_SIZE) {
h5badArgument(env, "H5Rget_name: obj ref input array != H5R_OBJ_REF_BUF_SIZE");
} /* end if */
else if ((ref_type == H5R_DATASET_REGION)
&& ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
h5badArgument(env, "H5Rget_name: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
} /* end else if */
else {
refP = (jbyte *)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
if (refP == NULL) {
h5JNIFatalError(env, "H5Rget_name: ref not pinned");
} /* end if */
else {
aName = (char*)HDmalloc(sizeof(char)*bs);
if (aName == NULL) {
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
h5outOfMemory(env, "H5Rget_name: malloc failed");
} /* end if */
else {
ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refP, aName, bs) ;
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
if (ret_val < 0) {
HDfree(aName);
h5libraryError(env);
} /* end if */
else {
str = ENVPTR->NewStringUTF(ENVPAR aName);
ENVPTR->SetObjectArrayElement(ENVPAR name, 0, str);
HDfree(aName);
} /* end else */
} /* end else */
} /* end else */
} /* end else */
} /* end else */
return ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1name */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Ewalk2
* Signature: (JJLjava/lang/Object;Ljava/lang/Object;)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Ewalk2
(JNIEnv *env, jclass cls, jlong stk_id, jlong direction, jobject callback_op, jobject op_data)
{
ENVPTR->GetJavaVM(ENVPAR &jvm);
visit_callback = callback_op;
if ((op_data == NULL) || (callback_op == NULL)) {
h5nullArgument(env, "H5Ewalk2: op_data or callback_op is NULL");
} /* end if */
else if (H5Ewalk2(stk_id, (H5E_direction_t)direction, (H5E_walk2_t)H5E_walk_cb, (void*)op_data) < 0)
h5libraryError(env);
} /* end iJava_hdf_hdf5lib_H5_H5Ewalk2f */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Rcreate
* Signature: ([BJLjava/lang/String;IJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rcreate(JNIEnv *env, jclass clss, jbyteArray ref, jlong loc_id, jstring name, jint ref_type, jlong space_id)
{
const char *rName;
herr_t status = -1;
jbyte *refP;
jboolean isCopy2;
PIN_JAVA_STRING(name, rName, -1);
if (ref == NULL) {
UNPIN_JAVA_STRING(name, rName);
h5nullArgument( env, "H5Rcreate: ref is NULL");
} /* end if */
else {
if ((ref_type == H5R_OBJECT) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_OBJ_REF_BUF_SIZE) {
UNPIN_JAVA_STRING(name, rName);
h5badArgument( env, "H5Rcreate: ref input array != H5R_OBJ_REF_BUF_SIZE");
} /* end if */
else if ((ref_type == H5R_DATASET_REGION) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
UNPIN_JAVA_STRING(name, rName);
h5badArgument( env, "H5Rcreate: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
} /* end else if */
else if ((ref_type != H5R_OBJECT) && (ref_type != H5R_DATASET_REGION)) {
UNPIN_JAVA_STRING(name, rName);
h5badArgument( env, "H5Rcreate: ref_type unknown type ");
} /* end else if */
else {
refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy2);
if (refP == NULL) {
UNPIN_JAVA_STRING(name, rName);
h5JNIFatalError(env, "H5Rcreate: ref not pinned");
} /* end if */
else {
status = H5Rcreate(refP, (hid_t)loc_id, rName, (H5R_type_t)ref_type, (hid_t)space_id);
UNPIN_JAVA_STRING(name, rName);
if (status < 0) {
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
h5libraryError(env);
} /* end if */
else {
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, 0);
} /* end else */
} /* end else */
} /* end else */
} /* end else */
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Rcreate */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Lvisit
* Signature: (JIILjava/lang/Object;Ljava/lang/Object;)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Lvisit
(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order,
jobject callback_op, jobject op_data)
{
herr_t status = -1;
cb_wrapper wrapper = {callback_op, op_data};
ENVPTR->GetJavaVM(ENVPAR &jvm);
if ((op_data == NULL) || (callback_op == NULL)) {
h5nullArgument(env, "H5Lvisit: op_data or callback_op is NULL");
} /* end if */
else {
status = H5Lvisit((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper);
if (status < 0)
h5libraryError(env);
} /* end else */
return status;
} /* end Java_hdf_hdf5lib_H5_H5Lvisit */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Aiterate
* Signature: (JIIJLjava/lang/Object;Ljava/lang/Object;)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aiterate
(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order,
jlong idx, jobject callback_op, jobject op_data)
{
hsize_t start_idx = (hsize_t)idx;
herr_t status = -1;
ENVPTR->GetJavaVM(ENVPAR &jvm);
visit_callback = callback_op;
if ((op_data == NULL) || (callback_op == NULL)) {
h5nullArgument(env, "H5Literate_by_name: op_data or callback_op is NULL");
} /* end if */
else {
status = H5Aiterate2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void*)op_data);
if (status < 0)
h5libraryError(env);
} /* end else */
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aiterate */
/*
* Class: hdf_hdf5lib_H5
* Method: H5AreadVL
* Signature: (JJJJJ[Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5AreadVL
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf)
{
herr_t status = -1;
htri_t isStr = 0;
htri_t isVlenStr = 0;
htri_t isComplex = 0;
if (buf == NULL) {
h5nullArgument(env, "H5AreadVL: buf is NULL");
} /* end if */
else {
isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING);
if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) {
unsigned i;
int nm = H5Tget_nmembers(mem_type_id);
for(i = 0; i <nm; i++) {
hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i);
isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) ||
H5Tdetect_class((hid_t)nested_tid, H5T_VLEN);
H5Tclose(nested_tid);
}
}
else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) {
isVlenStr = 1; /* strings created by H5Tvlen_create(H5T_C_S1) */
}
if (isStr == 0 || isComplex>0 || isVlenStr) {
status = H5AreadVL_asstr(env, (hid_t)attr_id, (hid_t)mem_type_id, buf);
}
else if (isStr > 0) {
status = H5AreadVL_str(env, (hid_t)attr_id, (hid_t)mem_type_id, buf);
}
} /* end else */
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1VL */