bool GeneticEventManager::decode_allele( ge_id_t eID, pos_t & pos, allele_t & all ) {
bool bFound = false;
int len = 0;
switch( getFormat( eID ) ) {
case efSUBSTITUTION4:
++len;
case efSUBSTITUTION3:
++len;
case efSUBSTITUTION2:
++len;
case efSUBSTITUTION1:
bFound = handleShortSubstitution( eID, ++len, pos, all );
break;
case efINSERT4:
++len;
case efINSERT3:
++len;
case efINSERT2:
++len;
case efINSERT1:
bFound = handleShortInsert( eID, ++len, pos, all );
break;
case efDELETION:
bFound = handleDeletion( eID, pos, all );
break;
case efINDEX:
bFound = handleIndex( eID, pos, all );
break;
default:
assert(false);
break;
}
return bFound;
}
int main(int argc, char *argv[])
{
printf("====================== mSquared File Transfer Program ======================\n\n");
printf("Developed by: Mrinal Dhar 201325118 | Mounika Somisetty 201330076\n");
printf("Enter 'help' to get help about commands and other cool stuff this program can do.\n\n");
printf("============================================================================\n\n");
int serv_pid = 0;
int udpServ_pid = 0;
int i;
char cmd[1024];
char *vals[49];
WEB_PORT = strdup("8000");
if(argc == 2)
{
bzero(IP,sizeof(IP));
strcpy(IP,argv[1]);
}
else {
strcpy(IP, "127.0.0.1");
}
serv_pid = fork();
if (serv_pid == 0) {
listenSocket = socket(AF_INET,SOCK_STREAM,0);
if(listenSocket<0)
{
// printf("ERROR WHILE CREATING A SOCKET\n");
}
else {}
// printf("[SERVER] SOCKET ESTABLISHED SUCCESSFULLY\n\n");
initServer();
close(listenSocket);
}
serv_pid = fork();
if (serv_pid == 0) {
struct mg_server *server;
// Create and configure the server
server = mg_create_server(NULL, ev_handler);
mg_set_option(server, "listening_port", WEB_PORT);
// Serve request.
// printf("Web Server Starting on port %s\n", mg_get_option(server, "listening_port"));
for (;;) {
mg_poll_server(server, 1000);
}
// Cleanup, and free server instance
mg_destroy_server(&server);
}
periodicCheck();
char filename[50];
char chat_msg[50];
char * returncode;
while (1) {
printf("$> ");
scanf("%[^\n]s", cmd);
// printf("THIS: %s\n", cmd);
getchar();
if (cmd[0]=='-') {
bzero(chat_msg, 50);
cpy(filename+1, cmd+1);
filename[0] = 'c';
// printf("THIS=%s", filename);
sendMsg(filename, 0);
}
else {
parse(cmd, vals);
if(!strcmp(vals[0], "FileDownload")) {
if (!strcmp(vals[1], "TCP")) {
bzero(filename, 50);
cpy(filename+2, vals[2]);
filename[0] = 'd';
filename[1] = 't';
if(!initCDTCP(filename))
break;
}
else if (!strcmp(vals[1], "UDP")) {
bzero(filename, 50);
cpy(filename+2, vals[2]);
filename[0] = 'd';
filename[1] = 'u';
// sleep(5);
if (!initUDPClient(filename+2, IP))
break;
sendMsg(filename, 0);
bzero(filename, 50);
}
}
else if (!strcmp(vals[0], "FileUpload")) {
if (!strcmp(vals[1], "TCP")) {
// printf("DOING!!\n\n");
bzero(filename, 50);
cpy(filename+2, vals[2]);
filename[0] = 'u';
filename[1] = 't';
sendMsg(filename, 0);
bzero(filename, 50);
}
else if (!strcmp(vals[1], "UDP")) {
bzero(filename, 50);
cpy(filename+2, vals[2]);
filename[0] = 'u';
filename[1] = 'u';
returncode = sendMsg(filename, 1);
// printf("GOT RCODE %s\n\n", returncode);
if (returncode[0]=='y')
{
printf("Permission granted!\n");
sleep(2);
initUDPServer(filename+2, IP);
}
bzero(filename, 50);
}
}
else if(!strcmp(vals[0], "exit")) {
close(listenSocket);
system("killall -s 9 server");
exit(0);
}
else if(!strcmp(vals[0], "FileHash")) {
if (!strcmp(vals[1], "--verify")) {
strcpy(filename, "hv");
strcat(filename, vals[2]);
sendMsg(filename, 0);
}
else if (!strcmp(vals[1], "--checkall")) {
strcpy(filename, "hc");
sendMsg(filename, 0);
}
bzero(filename, 50);
filename[0] = 'd';
filename[1] = 't';
strcpy(filename+2, "fileHashOutput.txt");
initCDTCP(filename);
}
else if(!strcmp(vals[0], "gui")) {
// THE FOLLOWING CODE TRIES TO AUTOMATICALLY OPEN FIREFOX WHEN GUI IS ACTIVATED. This has some bugs.
// char * ffox[1];
// ffox[0] = strdup("firefox ");
// strcat(ffox[0], IP);
// strcat(ffox[0], ":");
// strcat(ffox[0], WEB_PORT);
// serv_pid = fork();
// if (serv_pid==0) {
// if (execvp(ffox[0], ffox) < 0) {
// printf("*** ERROR: exec failed\n");
// exit(1);
// }
// }
}
else if (!strcmp(vals[0], "help")) {
FILE *fp = fopen("readme.txt", "rb");
while (fread(buffer, sizeof(char), 1024, fp))
{
printf("%s", buffer);
bzero(buffer,1024);
}
}
else if(!strcmp(vals[0], "IndexGet")) { /* I need indexget to work on both the remote machine and the local machine
and give output in four files: index-they.txt index-me.txt index-they-gui.txt index-me-gui.txt */
// handleIndex(1,0);
if (!strcmp(vals[1], "--shortlist")) {
strcpy(filename, "is");
sendMsg(filename, 0);
handleIndex(0,0,"\0", 0, 0);
}
else if (!strcmp(vals[1], "--longlist")) {
strcpy(filename, "il");
sendMsg(filename, 0);
handleIndex(1,0,"\0", 0, 0);
}
else if (!strcmp(vals[1], "--regex")) {
strcpy(filename, "ir");
strcat(filename, vals[2]);
sendMsg(filename, 0);
// handleIndex(1,1,vals[2], 0, 0);
}
bzero(filename, 50);
filename[0] = 'd';
filename[1] = 't';
strcpy(filename+2, "index.txt");
initCDTCP(filename);
}
continue;
}
}
printf("\nClosing connection2\n");
return 0;
}
int main(int argc, char *argv[])
{
int serv_pid = 0;
int udpServ_pid = 0;
int i;
char cmd[1024];
char *vals[49];
serv_pid = fork();
if (serv_pid == 0) {
listenSocket = socket(AF_INET,SOCK_STREAM,0);
if(listenSocket<0)
{
printf("ERROR WHILE CREATING A SOCKET\n");
}
else
printf("[SERVER] SOCKET ESTABLISHED SUCCESSFULLY\n\n");
initServer();
close(listenSocket);
}
char filename[50];
char * returncode;
while (1) {
printf("$> ");
scanf("%[^\n]s", cmd);
getchar();
parse(cmd, vals);
if(!strcmp(vals[0], "FileDownload")) {
if (!strcmp(vals[1], "TCP")) {
bzero(filename, 50);
cpy(filename+2, vals[2]);
filename[0] = 'd';
filename[1] = 't';
if(!initCDTCP(filename))
break;
}
else if (!strcmp(vals[1], "UDP")) {
bzero(filename, 50);
cpy(filename+2, vals[2]);
filename[0] = 'd';
filename[1] = 'u';
sendMsg(filename);
if (!initUDPClient(filename+2))
break;
bzero(filename, 50);
}
}
else if (!strcmp(vals[0], "FileUpload")) {
if (!strcmp(vals[1], "TCP")) {
printf("DOING!!\n\n");
bzero(filename, 50);
cpy(filename+2, vals[2]);
filename[0] = 'u';
filename[1] = 't';
sendMsg(filename);
bzero(filename, 50);
}
else if (!strcmp(vals[1], "UDP")) {
bzero(filename, 50);
cpy(filename+2, vals[2]);
filename[0] = 'u';
filename[1] = 'u';
sendMsg(filename);
initUDPServer(filename+2);
bzero(filename, 50);
}
}
else if(!strcmp(vals[0], "exit")) {
close(listenSocket);
exit(0);
}
else if(!strcmp(vals[0], "IndexGet")) {
// handleIndex(1,0);
if (!strcmp(vals[1], "--shortlist")) {
handleIndex(0,0,"\0");
}
else if (!strcmp(vals[1], "--longlist")) {
handleIndex(1,0,"\0");
}
else if (!strcmp(vals[1], "--regex")) {
handleIndex(1,1,vals[2]);
}
}
continue;
}
printf("\nClosing connection2\n");
return 0;
}
