static int djoy_open(FAR struct file *filep)
{
FAR struct inode *inode;
FAR struct djoy_upperhalf_s *priv;
FAR const struct djoy_lowerhalf_s *lower;
FAR struct djoy_open_s *opriv;
#ifndef CONFIG_DISABLE_POLL
djoy_buttonset_t supported;
#endif
int ret;
DEBUGASSERT(filep && filep->f_inode);
inode = filep->f_inode;
DEBUGASSERT(inode->i_private);
priv = (FAR struct djoy_upperhalf_s *)inode->i_private;
/* Get exclusive access to the driver structure */
ret = djoy_takesem(&priv->du_exclsem);
if (ret < 0)
{
ierr("ERROR: djoy_takesem failed: %d\n", ret);
return ret;
}
/* Allocate a new open structure */
opriv = (FAR struct djoy_open_s *)kmm_zalloc(sizeof(struct djoy_open_s));
if (!opriv)
{
ierr("ERROR: Failled to allocate open structure\n");
ret = -ENOMEM;
goto errout_with_sem;
}
/* Initialize the open structure */
#ifndef CONFIG_DISABLE_POLL
lower = priv->du_lower;
DEBUGASSERT(lower && lower->dl_supported);
supported = lower->dl_supported(lower);
opriv->do_pollevents.dp_press = supported;
opriv->do_pollevents.dp_release = supported;
#endif
/* Attach the open structure to the device */
opriv->do_flink = priv->du_open;
priv->du_open = opriv;
/* Attach the open structure to the file structure */
filep->f_priv = (FAR void *)opriv;
ret = OK;
errout_with_sem:
djoy_givesem(&priv->du_exclsem);
return ret;
}
int sam_ajoy_initialization(void)
{
int ret;
int fd;
int i;
/* NOTE: The ADC driver was initialized earlier in the bring-up sequence. */
/* Open the ADC driver for reading. */
fd = open("/dev/adc0", O_RDONLY);
if (fd < 0)
{
int errcode = get_errno();
ierr("ERROR: Failed to open /dev/adc0: %d\n", errcode);
return -errcode;
}
/* Detach the file structure from the file descriptor so that it can be
* used on any thread.
*/
ret = file_detach(fd, &g_adcfile);
if (ret < 0)
{
ierr("ERROR: Failed to detach from file descriptor: %d\n", ret);
(void)close(fd);
return ret;
}
/* Configure the GPIO pins as interrupting inputs. */
for (i = 0; i < AJOY_NGPIOS; i++)
{
/* Configure the PIO as an input */
sam_configpio(g_joypio[i]);
/* Configure PIO interrupts, attach the interrupt handler, but leave
* the interrupt disabled.
*/
sam_pioirq(g_joypio[i]);
(void)irq_attach(g_joyirq[i], ajoy_interrupt);
sam_pioirqdisable(g_joyirq[i]);
}
/* Register the joystick device as /dev/ajoy0 */
ret = ajoy_register("/dev/ajoy0", &g_ajoylower);
if (ret < 0)
{
ierr("ERROR: ajoy_register failed: %d\n", ret);
file_close_detached(&g_adcfile);
}
return ret;
}
int btn_register(FAR const char *devname,
FAR const struct btn_lowerhalf_s *lower)
{
FAR struct btn_upperhalf_s *priv;
int ret;
DEBUGASSERT(devname && lower);
/* Allocate a new button driver instance */
priv = (FAR struct btn_upperhalf_s *)
kmm_zalloc(sizeof(struct btn_upperhalf_s));
if (!priv)
{
ierr("ERROR: Failed to allocate device structure\n");
return -ENOMEM;
}
/* Make sure that all button interrupts are disabled */
DEBUGASSERT(lower->bl_enable);
lower->bl_enable(lower, 0, 0, NULL, NULL);
/* Initialize the new button driver instance */
priv->bu_lower = lower;
nxsem_init(&priv->bu_exclsem, 0, 1);
DEBUGASSERT(lower->bl_buttons);
priv->bu_sample = lower->bl_buttons(lower);
/* And register the button driver */
ret = register_driver(devname, &btn_fops, 0666, priv);
if (ret < 0)
{
ierr("ERROR: register_driver failed: %d\n", ret);
goto errout_with_priv;
}
return OK;
errout_with_priv:
nxsem_destroy(&priv->bu_exclsem);
kmm_free(priv);
return ret;
}
// -------------------------------------------------------------
// PETScConfigurable::p_unprocessOptions
// -------------------------------------------------------------
void
PETScConfigurable::p_unprocessOptions(void)
{
boost::char_separator<char> sep(" \t\f\n\r\v", "");
boost::tokenizer<boost::char_separator<char> >
opttok(p_loadedOptions, sep);
boost::tokenizer<boost::char_separator<char> >::iterator o;
for (o = opttok.begin(); o != opttok.end(); ++o) {
if ((*o)[0] == '-' && islower((*o)[1])) {
PetscErrorCode ierr(0);
try {
if (verbose) {
std::cout << "p_unprocessOptions: removing \""
<< *o << "\"" << std::endl;
}
ierr = PetscOptionsClearValue(
#if PETSC_VERSION_GE(3,7,0)
NULL,
#endif
o->c_str());
} catch (const PETSC_EXCEPTION_TYPE& e) {
throw PETScException(ierr, e);
}
}
}
p_loadedOptions.clear();
}
static void stmpe811_timeout(int argc, uint32_t arg1, ...)
{
FAR struct stmpe811_dev_s *priv = (FAR struct stmpe811_dev_s *)((uintptr_t)arg1);
int ret;
/* Are we still stuck in the pen down state? */
if (priv->sample.contact == CONTACT_DOWN ||
priv->sample.contact == CONTACT_MOVE)
{
/* Yes... is the worker thread available? If not, then apparently
* we have work already pending?
*/
if (work_available(&priv->timeout))
{
/* Yes.. Transfer processing to the worker thread. Since STMPE811
* interrupts are disabled while the work is pending, no special
* action should be required to protect the work queue.
*/
ret = work_queue(HPWORK, &priv->timeout, stmpe811_timeoutworker, priv, 0);
if (ret != 0)
{
ierr("ERROR: Failed to queue work: %d\n", ret);
}
}
}
}
PetscErrorCode
PetscNonlinearSolverImplementation::FormJacobian(SNES snes, Vec x,
Mat jac, Mat B,
void *dummy)
{
PetscErrorCode ierr(0);
// Necessary C cast
PetscNonlinearSolverImplementation *solver =
(PetscNonlinearSolverImplementation *)dummy;
// Copy PETSc's current estimate into
// Should be the case, but just make sure
BOOST_ASSERT(jac == *(solver->p_petsc_J));
BOOST_ASSERT(B == *(solver->p_petsc_J));
// Not sure about this
BOOST_ASSERT(x == *(solver->p_petsc_X));
// May need to do this, which seems slow.
// ierr = VecCopy(x, *(solver->p_petsc_X)); CHKERRQ(ierr);
// Call the user-specified function (object) to form the Jacobian
(solver->p_jacobian)(*(solver->p_X), *(solver->p_J));
return ierr;
}
// -------------------------------------------------------------
// PetscNonlinearSolverImplementation::FormFunction
// -------------------------------------------------------------
PetscErrorCode
PetscNonlinearSolverImplementation::FormFunction(SNES snes, Vec x, Vec f, void *dummy)
{
PetscErrorCode ierr(0);
// Necessary C cast
PetscNonlinearSolverImplementation *solver =
(PetscNonlinearSolverImplementation *)dummy;
// Apparently, you cannot count on x and f (like in FormJacobian())
// being the same as those used to set up SNES, so the PETSc
// solution and function vectors are wrapped temporarily for the
// user function
boost::scoped_ptr<Vector>
xtmp(new Vector(new PETScVectorImplementation(x, false)));
boost::scoped_ptr<Vector>
ftmp(new Vector(new PETScVectorImplementation(f, false)));
// Call the user-specified function (object) to form the RHS
(solver->p_function)(*xtmp, *ftmp);
xtmp.reset();
ftmp.reset();
return ierr;
}
int main(int argc, char* argv[])
{
// Instantiating a boost::mpi::environment here calls MPI_Init() so
// PETSc won't
mpi::environment env(argc, argv);
mpi::communicator world;
int nproc = world.size();
int me = world.rank();
PetscErrorCode ierr(0);
ierr = PetscInitialize(&argc, &argv, PETSC_NULL, PETSC_NULL);
CHKERRQ(ierr);
std::cout << "I am process " << me << " of " << nproc << "." << std::endl;
world.barrier();
VWrap *v(new VWrap(world));
v->view();
PetscBool ok;
delete v;
ierr = PetscFinalize();
CHKERRQ(ierr);
world.barrier();
return 0;
}
// -------------------------------------------------------------
// PetscNonlinearSolverImplementation::p_solve
// -------------------------------------------------------------
void
PetscNonlinearSolverImplementation::p_solve(void)
{
PetscErrorCode ierr(0);
p_petsc_X = PETScVector(*p_X);
int me(this->processor_rank());
try {
ierr = SNESSolve(p_snes, NULL, *p_petsc_X); CHKERRXX(ierr);
SNESConvergedReason reason;
PetscInt iter;
ierr = SNESGetConvergedReason(p_snes, &reason); CHKERRXX(ierr);
ierr = SNESGetIterationNumber(p_snes, &iter); CHKERRXX(ierr);
std::string msg;
if (reason < 0) {
msg =
boost::str(boost::format("%d: PETSc SNES diverged after %d iterations, reason: %d") %
me % iter % reason);
throw Exception(msg);
} else if (me == 0) {
msg =
boost::str(boost::format("%d: PETSc SNES converged after %d iterations, reason: %d") %
me % iter % reason);
std::cerr << msg << std::endl;
}
} catch (const PETSC_EXCEPTION_TYPE& e) {
throw PETScException(ierr, e);
} catch (const Exception& e) {
throw e;
}
}
/// Solve again w/ the specified RHS, put result in specified vector (specialized)
void p_resolveImpl(const VectorType& b, VectorType& x) const
{
PetscErrorCode ierr(0);
int me(this->processor_rank());
try {
const Vec *bvec(PETScVector(b));
Vec *xvec(PETScVector(x));
ierr = KSPSolve(p_KSP, *bvec, *xvec); CHKERRXX(ierr);
int its;
KSPConvergedReason reason;
PetscReal rnorm;
ierr = KSPGetIterationNumber(p_KSP, &its); CHKERRXX(ierr);
ierr = KSPGetConvergedReason(p_KSP, &reason); CHKERRXX(ierr);
ierr = KSPGetResidualNorm(p_KSP, &rnorm); CHKERRXX(ierr);
std::string msg;
if (reason < 0) {
msg =
boost::str(boost::format("%d: PETSc KSP diverged after %d iterations, reason: %d") %
me % its % reason);
throw Exception(msg);
} else if (me == 0) {
msg =
boost::str(boost::format("%d: PETSc KSP converged after %d iterations, reason: %d") %
me % its % reason);
std::cerr << msg << std::endl;
}
} catch (const PETSC_EXCEPTION_TYPE& e) {
throw PETScException(ierr, e);
} catch (const Exception& e) {
throw e;
}
}
/// Solve w/ the specified RHS and estimate (result in x)
void p_solveImpl(MatrixType& A, const VectorType& b, VectorType& x) const
{
PetscErrorCode ierr(0);
try {
Mat *Amat(PETScMatrix(A));
if (p_matrixSet && this->p_constSerialMatrix) {
// KSPSetOperators can be skipped
} else {
#if PETSC_VERSION_LT(3,5,0)
ierr = KSPSetOperators(p_KSP, *Amat, *Amat, SAME_NONZERO_PATTERN); CHKERRXX(ierr);
#else
ierr = KSPSetOperators(p_KSP, *Amat, *Amat); CHKERRXX(ierr);
#endif
p_matrixSet = true;
}
this->p_resolveImpl(b, x);
} catch (const PETSC_EXCEPTION_TYPE& e) {
throw PETScException(ierr, e);
} catch (const Exception& e) {
throw e;
}
}
/*
* rlines -- display the last offset lines of the file.
*/
static void
rlines(FILE *fp, const char *fn, off_t off, struct stat *sbp)
{
struct mapinfo map;
off_t curoff, size;
int i;
if (!(size = sbp->st_size))
return;
map.start = NULL;
map.fd = fileno(fp);
map.mapoff = map.maxoff = size;
/*
* Last char is special, ignore whether newline or not. Note that
* size == 0 is dealt with above, and size == 1 sets curoff to -1.
*/
curoff = size - 2;
while (curoff >= 0) {
if (curoff < map.mapoff && maparound(&map, curoff) != 0) {
ierr(fn);
return;
}
for (i = curoff - map.mapoff; i >= 0; i--)
if (map.start[i] == '\n' && --off == 0)
break;
/* `i' is either the map offset of a '\n', or -1. */
curoff = map.mapoff + i;
if (i >= 0)
break;
}
curoff++;
if (mapprint(&map, curoff, size - curoff) != 0) {
ierr(fn);
exit(1);
}
/* Set the file pointer to reflect the length displayed. */
if (fseeko(fp, sbp->st_size, SEEK_SET) == -1) {
ierr(fn);
return;
}
if (map.start != NULL && munmap(map.start, map.maplen)) {
ierr(fn);
return;
}
}
/*
* bytes -- read bytes to an offset from the end and display.
*
* This is the function that reads to a byte offset from the end of the input,
* storing the data in a wrap-around buffer which is then displayed. If the
* rflag is set, the data is displayed in lines in reverse order, and this
* routine has the usual nastiness of trying to find the newlines. Otherwise,
* it is displayed from the character closest to the beginning of the input to
* the end.
*/
int
bytes(FILE *fp, const char *fn, off_t off)
{
int ch, len, tlen;
char *ep, *p, *t;
int wrap;
char *sp;
if ((sp = p = malloc(off)) == NULL)
err(1, "malloc");
for (wrap = 0, ep = p + off; (ch = getc(fp)) != EOF;) {
*p = ch;
if (++p == ep) {
wrap = 1;
p = sp;
}
}
if (ferror(fp)) {
ierr(fn);
free(sp);
return 1;
}
if (rflag) {
for (t = p - 1, len = 0; t >= sp; --t, ++len)
if (*t == '\n' && len) {
WR(t + 1, len);
len = 0;
}
if (wrap) {
tlen = len;
for (t = ep - 1, len = 0; t >= p; --t, ++len)
if (*t == '\n') {
if (len) {
WR(t + 1, len);
len = 0;
}
if (tlen) {
WR(sp, tlen);
tlen = 0;
}
}
if (len)
WR(t + 1, len);
if (tlen)
WR(sp, tlen);
}
} else {
if (wrap && (len = ep - p))
WR(p, len);
len = p - sp;
if (len)
WR(sp, len);
}
free(sp);
return 0;
}
int
idxrewrite (unit *ftnunit)
{
s_idxwrite (ftnunit);
if (isrewcurr (ftnunit->isfd, ftnunit->f77fio_buf) < SUCCESS)
ierr (ftnunit->f77errlist.cierr, iserrno, "indexed rewrite");
return 0;
}
/*
* r_reg -- display a regular file in reverse order by line.
*/
static int
r_reg(FILE *fp, enum STYLE style, off_t off, struct stat *sbp)
{
off_t start, pos, end;
int ch;
end = sbp->st_size;
if (end == 0)
return (0);
/* Position before char, ignore last char whether newline or not */
pos = end-2;
ch = EOF;
start = 0;
if (style == RBYTES && off < end)
start = end - off;
for (; pos >= start; pos--) {
/* A seek per char isn't a problem with a smart stdio */
if (fseeko(fp, pos, SEEK_SET) != 0) {
ierr();
return (0);
}
if ((ch = getc(fp)) == '\n') {
while (--end > pos)
COPYCHAR(fp, ch);
end++;
if (style == RLINES && --off == 0)
break;
}
else if (ch == EOF) {
ierr();
return (0);
}
}
if (pos < start) {
if (ch != EOF && ungetc(ch, fp) == EOF) {
ierr();
return (0);
}
while (--end >= start)
COPYCHAR(fp, ch);
}
return (0);
}
int djoy_register(FAR const char *devname,
FAR const struct djoy_lowerhalf_s *lower)
{
FAR struct djoy_upperhalf_s *priv;
int ret;
DEBUGASSERT(devname && lower);
/* Allocate a new djoystick driver instance */
priv = (FAR struct djoy_upperhalf_s *)
kmm_zalloc(sizeof(struct djoy_upperhalf_s));
if (!priv)
{
ierr("ERROR: Failed to allocate device structure\n");
return -ENOMEM;
}
/* Make sure that all djoystick interrupts are disabled */
DEBUGASSERT(lower->dl_enable);
lower->dl_enable(lower, 0, 0, NULL, NULL);
/* Initialize the new djoystick driver instance */
priv->du_lower = lower;
sem_init(&priv->du_exclsem, 0, 1);
DEBUGASSERT(lower->dl_sample);
priv->du_sample = lower->dl_sample(lower);
/* And register the djoystick driver */
ret = register_driver(devname, &djoy_fops, 0666, priv);
if (ret < 0)
{
ierr("ERROR: register_driver failed: %d\n", ret);
sem_destroy(&priv->du_exclsem);
kmm_free(priv);
}
return ret;
}
static ssize_t btn_read(FAR struct file *filep, FAR char *buffer,
size_t len)
{
FAR struct inode *inode;
FAR struct btn_upperhalf_s *priv;
FAR const struct btn_lowerhalf_s *lower;
int ret;
DEBUGASSERT(filep && filep->f_inode);
inode = filep->f_inode;
DEBUGASSERT(inode->i_private);
priv = (FAR struct btn_upperhalf_s *)inode->i_private;
/* Make sure that the buffer is sufficiently large to hold at least one
* complete sample.
*
* REVISIT: Should also check buffer alignment.
*/
if (len < sizeof(btn_buttonset_t))
{
ierr("ERROR: buffer too small: %lu\n", (unsigned long)len);
return -EINVAL;
}
/* Get exclusive access to the driver structure */
ret = btn_takesem(&priv->bu_exclsem);
if (ret < 0)
{
ierr("ERROR: btn_takesem failed: %d\n", ret);
return ret;
}
/* Read and return the current state of the buttons */
lower = priv->bu_lower;
DEBUGASSERT(lower && lower->bl_buttons);
*(FAR btn_buttonset_t *)buffer = lower->bl_buttons(lower);
btn_givesem(&priv->bu_exclsem);
return (ssize_t)sizeof(btn_buttonset_t);
}
static ssize_t djoy_read(FAR struct file *filep, FAR char *buffer,
size_t len)
{
FAR struct inode *inode;
FAR struct djoy_upperhalf_s *priv;
FAR const struct djoy_lowerhalf_s *lower;
int ret;
DEBUGASSERT(filep && filep->f_inode);
inode = filep->f_inode;
DEBUGASSERT(inode->i_private);
priv = (FAR struct djoy_upperhalf_s *)inode->i_private;
/* Make sure that the buffer is sufficiently large to hold at least one
* complete sample.
*/
if (len < sizeof(djoy_buttonset_t))
{
ierr("ERROR: buffer too small: %lu\n", (unsigned long)len);
return -EINVAL;
}
/* Get exclusive access to the driver structure */
ret = djoy_takesem(&priv->du_exclsem);
if (ret < 0)
{
ierr("ERROR: djoy_takesem failed: %d\n", ret);
return ret;
}
/* Read and return the current state of the joystick buttons */
lower = priv->du_lower;
DEBUGASSERT(lower && lower->dl_sample);
priv->du_sample = lower->dl_sample(lower);
*(FAR djoy_buttonset_t *)buffer = priv->du_sample;
ret = sizeof(djoy_buttonset_t);
djoy_givesem(&priv->du_exclsem);
return (ssize_t)ret;
}
// -------------------------------------------------------------
// Finalize
// -------------------------------------------------------------
/// Does whatever is necessary to shut down the PETSc library
void
Finalize(void)
{
if (!Initialized()) return;
PetscErrorCode ierr(0);
try {
ierr = PetscFinalize(); CHKERRXX(ierr);
} catch (const PETSC_EXCEPTION_TYPE& e) {
throw PETScException(ierr, e);
}
}
// -------------------------------------------------------------
// Initialize
// -------------------------------------------------------------
/// Does whatever is necessary to start up the PETSc library
void
Initialize(void)
{
if (Initialized()) return;
PetscErrorCode ierr(0);
PetscBool flg;
#if USE_PROGRESS_RANKS
gridpack::parallel::Communicator comm;
MPI_Comm world = GA_MPI_Comm();
PETSC_COMM_WORLD = world;
#endif
try {
// Turn this on to enable PETSc logging.
#if 0
int argc = 2;
char **args;
args = new char*[2];
args[0] = new char[32];
args[1] = new char[32];
sprintf(args[0],"powerflow.x");
sprintf(args[1],"-log_summary");
ierr = PetscInitialize(&argc,&args,NULL,NULL); CHKERRXX(ierr);
delete [] args[1];
delete [] args[0];
delete [] args;
#else
ierr = PetscInitializeNoArguments(); CHKERRXX(ierr);
#endif
PetscOptionsHasName(
#if PETSC_VERSION_GE(3,7,0)
NULL,
#endif
NULL, "-log_summary", &flg);
ierr = PetscOptionsInsertFile(PETSC_COMM_WORLD,
#if PETSC_VERSION_GE(3,7,0)
NULL,
#endif
"gridpack.petscrc",
PETSC_FALSE); CHKERRXX(ierr);
} catch (const PETSC_EXCEPTION_TYPE& e) {
throw PETScException(ierr, e);
}
// Print out some information on processor configuration
int mpi_err, me, nproc;
mpi_err = MPI_Comm_rank(PETSC_COMM_WORLD, &me);
mpi_err = MPI_Comm_size(PETSC_COMM_WORLD, &nproc);
if (mpi_err > 0) {
throw gridpack::Exception("MPI initialization failed");
}
if (me == 0) {
printf("\nGridPACK math module configured on %d processors\n",nproc);
}
}
// -------------------------------------------------------------
// Initialized
// -------------------------------------------------------------
bool
Initialized(void)
{
PetscErrorCode ierr(0);
PetscBool result;
try {
ierr = PetscInitialized(&result); CHKERRXX(ierr);
} catch (const PETSC_EXCEPTION_TYPE& e) {
throw PETScException(ierr, e);
}
return result;
}
PetscNonlinearSolverImplementation::~PetscNonlinearSolverImplementation(void)
{
PetscErrorCode ierr(0);
try {
PetscBool ok;
ierr = PetscInitialized(&ok); CHKERRXX(ierr);
if (ok) {
ierr = SNESDestroy(&p_snes); CHKERRXX(ierr);
}
} catch (...) {
// just eat it
}
}
/// Destructor
~PETScLinearSolverImplementation(void)
{
PetscErrorCode ierr(0);
try {
PetscBool ok;
ierr = PetscInitialized(&ok);
if (ok) {
ierr = KSPDestroy(&p_KSP); CHKERRXX(ierr);
}
} catch (...) {
// just eat it
}
}
int sam_tsc_setup(int minor)
{
FAR struct spi_dev_s *dev;
int ret;
iinfo("minor %d\n", minor);
DEBUGASSERT(minor == 0);
/* Configure and enable the ADS7843E interrupt pin as an input */
(void)sam_configgpio(GPIO_TCS_BUSY);
(void)sam_configgpio(GPIO_TCS_IRQ);
/* Configure the PIO interrupt */
sam_gpioirq(GPIO_TCS_IRQ);
/* Get an instance of the SPI interface for the touchscreen chip select */
dev = sam_spibus_initialize(TSC_CSNUM);
if (!dev)
{
ierr("ERROR: Failed to initialize SPI chip select %d\n", TSC_CSNUM);
return -ENODEV;
}
/* Initialize and register the SPI touschscreen device */
ret = ads7843e_register(dev, &g_tscinfo, CONFIG_ADS7843E_DEVMINOR);
if (ret < 0)
{
ierr("ERROR: Failed to initialize SPI chip select %d\n", TSC_CSNUM);
/* sam_spibus_uninitialize(dev); */
return -ENODEV;
}
return OK;
}
int
idxclose (unit *ftnunit, flag idxerr)
{
if (isclose (ftnunit->isfd) < SUCCESS)
ierr (idxerr, iserrno, "indexed close");
if (ftnunit->ufnm) {
if (ftnunit->udisp & DELETE)
if (iserase (ftnunit->ufnm) < SUCCESS)
ierr (idxerr, iserrno, "indexed close");
free (ftnunit->ufnm);
ftnunit->ufnm = NULL;
}
/*
The following fixes bug #231656. The pointers involved are initialized
to zero (both when originally allocated in f_init() and when reallocated
in map_luno()). So, if non-zero, the buffers must have been allocated,
and we should free them.
*/
if (ftnunit->f77syl) {
free(ftnunit->f77syl);
ftnunit->f77syl = NULL;
}
if (ftnunit->f77fio_buf) {
free(ftnunit->f77fio_buf);
ftnunit->f77fio_buf = NULL;
ftnunit->f77fio_size = 0;
}
if (ftnunit->ukeys) {
free(ftnunit->ukeys);
ftnunit->ukeys = NULL;
}
ftnunit->ufd = NULL;
ftnunit->uconn = 0;
ftnunit->luno = 0;
ftnunit->ukeyid = -1;
return SUCCESS;
}
// -------------------------------------------------------------
// PetscNonlinearSolverImplementation::p_build
// -------------------------------------------------------------
void
PetscNonlinearSolverImplementation::p_build(const std::string& option_prefix)
{
PetscErrorCode ierr(0);
try {
ierr = SNESCreate(this->communicator(), &p_snes); CHKERRXX(ierr);
p_petsc_F = PETScVector(*p_F);
if (!p_function.empty()) {
ierr = SNESSetFunction(p_snes, *p_petsc_F, FormFunction,
static_cast<void *>(this)); CHKERRXX(ierr);
}
p_petsc_J = PETScMatrix(*p_J);
if (!p_jacobian.empty()) {
ierr = SNESSetJacobian(p_snes, *p_petsc_J, *p_petsc_J, FormJacobian,
static_cast<void *>(this)); CHKERRXX(ierr);
}
// set the
ierr = SNESSetOptionsPrefix(p_snes, option_prefix.c_str()); CHKERRXX(ierr);
KSP ksp;
ierr = SNESGetKSP(p_snes, &ksp); CHKERRXX(ierr);
ierr = KSPSetOptionsPrefix(ksp, option_prefix.c_str()); CHKERRXX(ierr);
PC pc;
ierr = KSPGetPC(ksp, &pc); CHKERRXX(ierr);
ierr = PCSetOptionsPrefix(pc, option_prefix.c_str()); CHKERRXX(ierr);
ierr = SNESMonitorSet(p_snes, MonitorNorms, PETSC_NULL, PETSC_NULL); CHKERRXX(ierr);
ierr = SNESSetTolerances(p_snes,
p_functionTolerance,
PETSC_DEFAULT,
p_solutionTolerance,
p_maxIterations,
PETSC_DEFAULT);
ierr = SNESSetFromOptions(p_snes); CHKERRXX(ierr);
} catch (const PETSC_EXCEPTION_TYPE& e) {
throw PETScException(ierr, e);
}
}
void SerializedOutputConsole::process(const char *line)
{
_ss_out.str("");
_ss_err.str("");
StreamInterceptor iout(&stdout, _tmp_out);
StreamInterceptor ierr(&stderr, _tmp_err);
_console->process(line);
iout.getInterceptedOutput(_ss_out);
ierr.getInterceptedOutput(_ss_err);
string str;
SerializedConsoleOutput sco(_ss_out.str(),
_ss_err.str(),
_console->prompt(),
_console->input());
sco.writeToString(&str);
std::cout << str;
std::cout.flush();
}
/**
*
*
* @param comm
* @param props
*
* @return PETSc options prefix to use
*/
void
PETScConfigurable::p_processOptions(utility::Configuration::CursorPtr props)
{
if (!props) return;
p_prefix = props->get(p_prefixKey, p_generatePrefix(p_comm));
if (*p_prefix.rbegin() != '_') {
p_prefix.append("_");
}
std::string optsorig, optsmod, optsfmt;
optsorig = props->get(p_optionsKey, "");
boost::char_separator<char> sep(" \t\f\n\r\v", "");
boost::tokenizer<boost::char_separator<char> >
opttok(optsorig, sep);
boost::tokenizer<boost::char_separator<char> >::iterator o;
for (o = opttok.begin(); o != opttok.end(); ++o) {
optsfmt.append(*o);
optsfmt.append(" ");
optsmod.append(prefixOptionMaybe(p_prefix, *o));
optsmod.append(" ");
}
if (verbose) {
std::cout << "p_processOptions: in: " << optsorig << std::endl;
std::cout << "p_processOptions: fmt: " << optsfmt << std::endl;
std::cout << "p_processOptions: out: " << optsmod << std::endl;
}
p_loadedOptions = optsmod;
PetscErrorCode ierr(0);
try {
ierr = PetscOptionsInsertString(
#if PETSC_VERSION_GE(3,7,0)
NULL,
#endif
p_loadedOptions.c_str()); CHKERRXX(ierr);
} catch (const PETSC_EXCEPTION_TYPE& e) {
throw PETScException(ierr, e);
}
return;
}
static
PetscErrorCode
fill_pattern(Mat A, InsertMode addv)
{
PetscErrorCode ierr(0);
PetscScalar x(0.0);
PetscInt lo, hi;
ierr = MatGetOwnershipRange(A, &lo, &hi); CHKERRXX(ierr);
for (int i = lo; i < hi; ++i) {
for (int j = lo; j < hi; ++j) {
ierr = MatSetValues(A, 1, &i, 1, &j, &x, addv); CHKERRXX(ierr);
x += 1.0;
}
}
ierr = MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY); CHKERRXX(ierr);
ierr = MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY); CHKERRXX(ierr);
return ierr;
}
static
void
convert_and_check(Mat A)
{
PetscErrorCode ierr(0);
PetscInt lo, hi;
Mat B;
ierr = MatConvertToDenseGA(A, &B); CHKERRXX(ierr);
ierr = MatGetOwnershipRange(B, &lo, &hi); CHKERRXX(ierr);
for (int i = lo; i < hi; ++i) {
for (int j = lo; j < hi; ++j) {
PetscScalar x;
PetscScalar y;
ierr = MatGetValues(A, 1, &i, 1, &j, &x); CHKERRXX(ierr);
ierr = MatGetValues(B, 1, &i, 1, &j, &y); CHKERRXX(ierr);
BOOST_CHECK_EQUAL(x, y);
}
}
ierr = MatDestroy(&B); CHKERRXX(ierr);
}