void lis_sort_id(LIS_INT is, LIS_INT ie, LIS_INT *i1, LIS_SCALAR *d1)
{
  LIS_INT i,j;
  LIS_INT p,t1;
  LIS_INT v;
  LIS_SCALAR s1;

  if( ie <= is ) return;

  p = (is+ie)/2;
  v = i1[p];
  lis_swap(i1[p],i1[ie],t1);
  lis_swap(d1[p],d1[ie],s1);

  i = is; j = ie;
  while(i<=j)
  {
    while(i1[i] < v) { i++; }
    while(i1[j] > v) { j--; }
    if( i<=j )
    {
      lis_swap(i1[i],i1[j],t1);
      lis_swap(d1[i],d1[j],s1);
      i++; j--;
    }
  }
  lis_sort_id(is,j ,i1,d1);
  lis_sort_id(i ,ie,i1,d1);
}
Esempio n. 2
0
LIS_INT lis_matrix_sort_csr(LIS_MATRIX A)
{
	LIS_INT i,n;

	LIS_DEBUG_FUNC_IN;

	if( !A->is_sorted )
	{
		n = A->n;
		if( A->is_splited )
		{
			#ifdef _OPENMP
			#pragma omp parallel for private(i)
			#endif
			for(i=0;i<n;i++)
			{
				lis_sort_id(A->L->ptr[i],A->L->ptr[i+1]-1,A->L->index,A->L->value);
				lis_sort_id(A->U->ptr[i],A->U->ptr[i+1]-1,A->U->index,A->U->value);
			}
		}
		else
		{
			#ifdef _OPENMP
			#pragma omp parallel for private(i)
			#endif
			for(i=0;i<n;i++)
			{
				lis_sort_id(A->ptr[i],A->ptr[i+1]-1,A->index,A->value);
			}
		}
		A->is_sorted = LIS_TRUE;
	}

	LIS_DEBUG_FUNC_OUT;
	return LIS_SUCCESS;
}
Esempio n. 3
0
LIS_INT main(LIS_INT argc, char* argv[])
{
  LIS_MATRIX A,A0;
  LIS_VECTOR b,x;
  LIS_SCALAR *value;
  LIS_INT nprocs,my_rank;
  int int_nprocs,int_my_rank;
  LIS_INT nthreads,maxthreads;
  LIS_INT gn,nnz,np;
  LIS_INT i,j,k,si,sj,sk,ii,jj,ctr;
  LIS_INT l,m,n,nn;
  LIS_INT is,ie;
  LIS_INT err,iter,matrix_type,storage,ss,se;
  LIS_INT *ptr,*index;
  double time,time2,nnzs,nnzap,nnzt;
  LIS_SCALAR val;
  double commtime,comptime,flops;

  LIS_DEBUG_FUNC_IN;
    
  lis_initialize(&argc, &argv);

#ifdef USE_MPI
  MPI_Comm_size(MPI_COMM_WORLD,&int_nprocs);
  MPI_Comm_rank(MPI_COMM_WORLD,&int_my_rank);
  nprocs = int_nprocs;
  my_rank = int_my_rank;
#else
  nprocs  = 1;
  my_rank = 0;
#endif

  if( argc < 5 )
    {
      if( my_rank==0 ) 
	{
	  printf("Usage: %s l m n iter [matrix_type]\n", argv[0]);
	}
      CHKERR(1);
    }

  l  = atoi(argv[1]);
  m  = atoi(argv[2]);
  n  = atoi(argv[3]);
  iter = atoi(argv[4]);
  if (argv[5] == NULL) {
    storage = 0;
  }
  else {
    storage = atoi(argv[5]);
  }

  if( iter<=0 )
    {
#ifdef _LONG__LONG
      if( my_rank==0 ) printf("iter=%lld <= 0\n",iter);
#else
      if( my_rank==0 ) printf("iter=%d <= 0\n",iter);
#endif
      CHKERR(1);
    }
  if( l<=0 || m<=0 || n<=0 )
    {
#ifdef _LONG__LONG
      if( my_rank==0 ) printf("l=%lld <=0, m=%lld <=0 or n=%lld <=0\n",l,m,n);
#else
      if( my_rank==0 ) printf("l=%d <=0, m=%d <=0 or n=%d <=0\n",l,m,n);
#endif
      CHKERR(1);
    }
  if( storage<0 || storage>11 )
    {
#ifdef _LONG__LONG
      if( my_rank==0 ) printf("matrix_type=%lld < 0 or matrix_type=%lld > 11\n",storage,storage);
#else
      if( my_rank==0 ) printf("matrix_type=%d < 0 or matrix_type=%d > 11\n",storage,storage);
#endif
      CHKERR(1);
    }

  if( my_rank==0 )
    {
      printf("\n");
#ifdef _LONG__LONG
      printf("number of processes = %lld\n",nprocs);
#else
      printf("number of processes = %d\n",nprocs);
#endif
    }

#ifdef _OPENMP
  nthreads = omp_get_num_procs();
  maxthreads = omp_get_max_threads();
  if( my_rank==0 )
    {
#ifdef _LONG__LONG
      printf("max number of threads = %lld\n", nthreads);
      printf("number of threads = %lld\n", maxthreads);
#else
      printf("max number of threads = %d\n", nthreads);
      printf("number of threads = %d\n", maxthreads);
#endif
    }
#else
  nthreads = 1;
  maxthreads = 1;
#endif

  /* create matrix and vectors */
  nn = l*m*n;
  err = lis_matrix_create(LIS_COMM_WORLD,&A0);
  err = lis_matrix_set_size(A0,0,nn);
  CHKERR(err);

  ptr   = (LIS_INT *)malloc((A0->n+1)*sizeof(LIS_INT));
  if( ptr==NULL ) CHKERR(1);
  index = (LIS_INT *)malloc(27*A0->n*sizeof(LIS_INT));
  if( index==NULL ) CHKERR(1);
  value = (LIS_SCALAR *)malloc(27*A0->n*sizeof(LIS_SCALAR));
  if( value==NULL ) CHKERR(1);

  lis_matrix_get_range(A0,&is,&ie);
  ctr = 0;
  for(ii=is;ii<ie;ii++)
    {
      i = ii/(m*n);
      j = (ii - i*m*n)/n;
      k = ii - i*m*n - j*n;
      for(si=-1;si<=1;si++) {
	if( i+si>-1 && i+si<l ) {
	  for(sj=-1;sj<=1;sj++) {
	    if( j+sj>-1 && j+sj<m ) {
	      for(sk=-1;sk<=1;sk++) {
		if( k+sk>-1 && k+sk<n ) {
		  jj = ii + si*m*n + sj*n + sk; 
		  index[ctr] = jj; 
		  if( jj==ii ) { value[ctr++] = 26.0;}
		  else { value[ctr++] = -1.0;}
		}
	      }
	    }
	  }
	}
      }
      ptr[ii-is+1] = ctr;
    }
  ptr[0] = 0;
  err = lis_matrix_set_csr(ptr[ie-is],ptr,index,value,A0);
  CHKERR(err);
  err = lis_matrix_assemble(A0);
  CHKERR(err);

  n   = A0->n;
  gn  = A0->gn;
  nnz = A0->nnz;
  np  = A0->np-n;

#ifdef USE_MPI
  MPI_Allreduce(&nnz,&i,1,LIS_MPI_INT,MPI_SUM,A0->comm);
  nnzap = (double)i / (double)nprocs;
  nnzt  = ((double)nnz -nnzap)*((double)nnz -nnzap);
  nnz   = i;
  MPI_Allreduce(&nnzt,&nnzs,1,MPI_DOUBLE,MPI_SUM,A0->comm);
  nnzs  = (nnzs / (double)nprocs)/nnzap;
  MPI_Allreduce(&np,&i,1,LIS_MPI_INT,MPI_SUM,A0->comm);
  np = i;
#endif

  if( my_rank==0 ) 
    {
#ifdef _LONG__LONG
      printf("matrix size = %lld x %lld (%lld nonzero entries)\n",gn,gn,nnz);
      printf("number of iterations = %lld\n\n",iter);
#else
      printf("matrix size = %d x %d (%d nonzero entries)\n",gn,gn,nnz);
      printf("number of iterations = %d\n\n",iter);
#endif
    }

  err = lis_vector_duplicate(A0,&x);
  if( err ) CHKERR(err);
  err = lis_vector_duplicate(A0,&b);
  if( err ) CHKERR(err);

  lis_matrix_get_range(A0,&is,&ie);
  for(i=0;i<n;i++)
    {
      err = lis_vector_set_value(LIS_INS_VALUE,i+is,1.0,x);
    }
  for(i=0;i<n;i++)
    {
      lis_sort_id(A0->ptr[i],A0->ptr[i+1]-1,A0->index,A0->value);
    }
		
  /* 
     MPI version of VBR is not implemented.
     DNS is also excluded to reduce memory usage.
  */

  if (storage==0) 
    {
      ss = 1;
      se = 11;
    }
  else
    {
      ss = storage;
      se = storage+1;
    }
	
  for (matrix_type=ss;matrix_type<se;matrix_type++)
    {
      if ( nprocs>1 && matrix_type==9 ) continue;
      lis_matrix_duplicate(A0,&A);
      lis_matrix_set_type(A,matrix_type);
      err = lis_matrix_convert(A0,A);
      if( err ) CHKERR(err);
		    
      comptime = 0.0;
      commtime = 0.0;

      for(i=0;i<iter;i++)
	{
#ifdef USE_MPI
	  MPI_Barrier(A->comm);
	  time = lis_wtime();
	  lis_send_recv(A->commtable,x->value);
	  commtime += lis_wtime() - time;
#endif
	  time2 = lis_wtime();
	  lis_matvec(A,x,b);
	  comptime += lis_wtime() - time2;
	}
      lis_vector_nrm2(b,&val);

      if( my_rank==0 )
	{
	  flops = 2.0*nnz*iter*1.0e-6 / comptime;
#ifdef USE_MPI
#ifdef _LONG__DOUBLE
#ifdef _LONG__LONG
	  printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#else
	  printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#endif
#else
#ifdef _LONG__LONG
	  printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#else
	  printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#endif
#endif
#else
#ifdef _LONG__DOUBLE
#ifdef _LONG__LONG
	  printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#else
	  printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#endif
#else
#ifdef _LONG__LONG
	  printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#else
	  printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#endif
#endif
#endif
	}
      lis_matrix_destroy(A);
    }

  lis_matrix_destroy(A0);
  lis_vector_destroy(b);
  lis_vector_destroy(x);

  lis_finalize();

  LIS_DEBUG_FUNC_OUT;

  return 0;
}