Esempi in C++ (Cpp) per mm_idx_cal_max_occ

Esempio n. 1

File: options.c Progetto: Piezoid/minimap2

void mm_mapopt_update(mm_mapopt_t *opt, const mm_idx_t *mi)
{
	if ((opt->flag & MM_F_SPLICE_FOR) || (opt->flag & MM_F_SPLICE_REV) || (mi->splices != 0))
		opt->flag |= MM_F_SPLICE;
	if (opt->specified_intron_score < 0)
		opt->specified_intron_score = opt->noncan / 2;
	if (opt->mid_occ <= 0)
		opt->mid_occ = mm_idx_cal_max_occ(mi, opt->mid_occ_frac);
	if (opt->mid_occ < opt->min_mid_occ)
		opt->mid_occ = opt->min_mid_occ;
	if (mm_verbose >= 3)
		fprintf(stderr, "[M::%s::%.3f*%.2f] mid_occ = %d\n", __func__, realtime() - mm_realtime0, cputime() / (realtime() - mm_realtime0), opt->mid_occ);
}

Esempio n. 2

File: index.c Progetto: cityCoder/minimap

void mm_idx_set_max_occ(mm_idx_t *mi, float f)
{
	mi->freq_thres = f;
	mi->max_occ = mm_idx_cal_max_occ(mi, f);
}