int lineToExp(char *line, char *fileName)
/* Convert line to an expression record file.
* Return number of expression records. */
{
FILE *f = mustOpen(fileName, "w");
struct hash *hash = newHash(10); /* Integer valued hash */
char *word;
int wordCount = 0;
struct expCounter *ec;
char *spaced;
char name[128];
while ((word = nextTabWord(&line)) != NULL)
{
if ((ec = hashFindVal(hash, word)) == NULL)
{
AllocVar(ec);
hashAddSaveName(hash, word, ec, &ec->name);
}
spaced = cloneString(word);
subChar(spaced, '_', ' ');
ec->count += 1;
if (ec->count > 1)
safef(name, sizeof(name), "%s %d", spaced, ec->count);
else
safef(name, sizeof(name), "%s", spaced);
fprintf(f, "%d\t", wordCount);
fprintf(f, "%s\t", name);
fprintf(f, "%s\t", name);
fprintf(f, "%s\t", "http://www.affymetrix.com/analysis/index.affx");
fprintf(f, "%s\t", "http://expression.gnf.org");
fprintf(f, "%s\t", "http://www.gnf.org");
fprintf(f, "3\t");
fprintf(f, "%s,%s,%s,\n", chip, "n/a", spaced);
++wordCount;
}
carefulClose(&f);
return wordCount;
}
int lineToExp(char *line, FILE *f)
/* Convert line to an expression record file.
* Return number of expression records. */
{
struct hash *hash = newHash(10); /* Integer valued hash */
char *word;
int wordCount = 0;
struct expCounter *ec;
char *spaced;
char name[128];
while ((word = nextTabWord(&line)) != NULL)
{
if ((ec = hashFindVal(hash, word)) == NULL)
{
AllocVar(ec);
hashAddSaveName(hash, word, ec, &ec->name);
}
spaced = cloneString(word);
subChar(spaced, '_', ' ');
ec->count += 1;
if (ec->count > 1)
safef(name, sizeof(name), "%s %d", spaced, ec->count);
else
safef(name, sizeof(name), "%s", spaced);
fprintf(f, "%d\t", wordCount);
fprintf(f, "%s\t", name);
fprintf(f, "%s\t", name);
fprintf(f, "%s\t", expUrl);
fprintf(f, "%s\t", expRef);
fprintf(f, "%s\t", expCredit);
fprintf(f, "3\t");
fprintf(f, "%s,%s,%s,\n", chip, "n/a", spaced);
++wordCount;
}
return wordCount;
}
