static rc_t write_to_sorter( struct sorter * sorter, int64_t seq_spot_id, uint32_t seq_read_id,
const String * unpacked_bases )
{
/* we write it to the store...*/
rc_t rc;
const String * to_store;
pack_4na( unpacked_bases, &sorter->buf );
rc = StringCopy( &to_store, &sorter->buf.S );
if ( rc != 0 )
ErrMsg( "StringCopy() -> %R", rc );
else
{
uint64_t key = make_key( seq_spot_id, seq_read_id );
rc = KVectorSetPtr( sorter->store, key, (const void *)to_store );
if ( rc != 0 )
ErrMsg( "KVectorSetPtr() -> %R", rc );
else
{
size_t item_size = ( sizeof key ) + ( sizeof *to_store ) + to_store->size;
sorter->bytes_in_store += item_size;
}
}
if ( rc == 0 &&
sorter->params.mem_limit > 0 &&
sorter->bytes_in_store >= sorter->params.mem_limit )
rc = save_store( sorter );
return rc;
}
rc_t write_unpacked_to_lookup_writer( struct lookup_writer * writer,
int64_t seq_spot_id,
uint32_t seq_read_id,
const String * bases_as_unpacked_4na )
{
uint64_t key = make_key( seq_spot_id, seq_read_id ); /* helper.c */
rc_t rc = pack_4na( bases_as_unpacked_4na, &writer -> buf ); /* helper.c */
if ( rc != 0 )
ErrMsg( "write_unpacked_to_lookup_writer() -> %R", rc );
else
rc = write_packed_to_lookup_writer( writer, key, &writer -> buf . S );
return rc;
}