int appendListToRange(const std::string& FLAG_setList,
OrderedMap<std::string, RangeList>* geneRange) {
std::vector<std::string> fd;
int ret = stringNaturalTokenize(FLAG_setList, ',', &fd);
std::string chr;
unsigned int beg, end;
for (size_t i = 0; i < fd.size(); ++i) {
if (!parseRangeFormat(fd[i], &chr, &beg, &end)) {
logger->error("Cannot parse range: %s", fd[i].c_str());
continue;
}
(*geneRange)[fd[i]].addRange(chr.c_str(), beg, end);
}
return ret;
}
/**
* input range such as:
* 1:100-200,3:200-300
* X:150
* MT
*/
void RangeList::addRangeList(const char* argRangeList) {
if (!strlen(argRangeList)) return;
std::string rangeList = argRangeList;
std::vector<std::string> col;
//col.AddTokens(arg, ',');
stringTokenize(rangeList, ',', &col);
for (size_t i = 0; i < col.size(); i++){
std::string c;
unsigned int b,e;
if (!parseRangeFormat(col[i], &c, &b, &e)) {
this->rangeCollection.addRange(c, b, e);
} else {
Rprintf("This range does not conform 1:100-200 format -- skip %s\n", col[i].c_str());
}
}
}
