void printLinkPair(PM_link_pair* LP, char ** bamNames, char ** contigNames)
{
printf("===\n(%s, %s, %d links)\n", contigNames[LP->cid_1], contigNames[LP->cid_2], LP->numLinks);
PM_link_info* LI = LP->LI;
do {
printf("\t");
printLinkInfo(LI, bamNames);
printf("\n");
} while(getNextLinkInfo(&LI));
}
void printLinks(cfuhash_table_t * linkHash,
char ** bamNames,
char ** contigNames) {
BM_LinkWalker walker;
int ret_val = initLinkWalker(&walker, linkHash);
if(ret_val)
printf("#cid_1\tcid_2\tpos_1\trev_1\tpos_2\trev_2\tfile\n");
while(ret_val != 0) {
printf("%s\t%s\t",
contigNames[walker.pair->cid1],
contigNames[walker.pair->cid2]);
printLinkInfo(walker.LI, bamNames);
ret_val = stepLinkWalker(&walker);
}
destroyLinkWalker(&walker);
}
