void Gsolve::reinit( const Eref& e, ProcPtr p )
{
if ( !stoichPtr_ )
return;
if ( !sys_.isReady )
rebuildGssaSystem();
for ( vector< GssaVoxelPools >::iterator
i = pools_.begin(); i != pools_.end(); ++i ) {
i->reinit( &sys_ );
}
}
void Gsolve::reinit( const Eref& e, ProcPtr p )
{
if ( !stoichPtr_ )
return;
if ( !sys_.isReady )
rebuildGssaSystem();
// First reinit concs.
for ( vector< GssaVoxelPools >::iterator
i = pools_.begin(); i != pools_.end(); ++i ) {
i->reinit( &sys_ );
}
// Second, take the arrived xCompt reac values and update S with them.
// Here the roundoff issues are handled by the GssaVoxelPools functions
for ( unsigned int i = 0; i < xfer_.size(); ++i ) {
const XferInfo& xf = xfer_[i];
for ( unsigned int j = 0; j < xf.xferVoxel.size(); ++j ) {
pools_[xf.xferVoxel[j]].xferInOnlyProxies(
xf.xferPoolIdx, xf.values,
stoichPtr_->getNumProxyPools(), j );
}
}
// Third, record the current value of pools as the reference for the
// next cycle.
for ( unsigned int i = 0; i < xfer_.size(); ++i ) {
XferInfo& xf = xfer_[i];
for ( unsigned int j = 0; j < xf.xferVoxel.size(); ++j ) {
pools_[xf.xferVoxel[j]].xferOut( j, xf.lastValues, xf.xferPoolIdx );
}
}
// Fourth, update the atots.
for ( vector< GssaVoxelPools >::iterator
i = pools_.begin(); i != pools_.end(); ++i ) {
i->refreshAtot( &sys_ );
}
}